These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 951 fasta sequence [CCGGTGTTGAACCGAATGTCGCGTCAAAACGTGGCAAGGGCGCGAGTGCAAAACCTGTCACGATGTGTCGATGCGAATGTGGTACGGGTTAGTTTGTGTTTTTTCTCTTTTGTTTTCATCTTTGAGAGTTTTCCAACAGTGGCACACCCGCGACGCAGAAGACATTCACACCGCCGGGGGGTGTCACTCTGTTTAGTGATAGTAGTTTATAGTTGAAATAAGTATGCGATTGTGTAAAATGAAGAATATTGAATTGAAATTACTTAAACAACACAATTAAGCGGAGGGGCTGGGCGCGATGTGATGAACACAGAGAGACAGAACACAGGTAAAAAGGGTGCCAAACAGAGGAAAATATTAACATGGAAGTGCATAGGGAGAATGAAGCACGGGAAATCAATAACAGGAAGCAAATCATCAATGAACGAACAACAAAACAGTAGCCAAGCCTAATCCCGATTAAGTAAAGCAGCATCTTTAGCGAAGTCGTTGCCTACAATTTATTTTGTTGGCCAAGTTCTTGGGATATGAGTACGACAGTACTCTGCTATTAGGCTTTACGTTGAGACACAGTTTGTTGCATTTTCTCTCACTACTACTGCGGCCTGGGGAAAGGGAAGTAAAGCCGG-CCCATTACGCCCCCCCCAAACCACGGGAAGAAAACTAACACATTCGACTTTCTGCGATATTTAATAATTAGCTCCCCCTAACCTAAGCATAACGAAATAATAATGCATTAGCAAACAAACAAACAAACAAAAAGGTATCTTATCTCACAGAGTAGTGTTTGTGGCCCTTTACTTGTCGCTCATACTCTTCTCTCTTGCATTGATATTCCAACGTTCTTCTAGCGCTCCGTAATCTATGTTGTGAGAGACAAAACAAAAAAACGAACGCAAAAACACAGGTTTAGCAGTAGATGTGTACTTAAAAGGTTTAACTAAATTTCGT] [+] EMBL BM632813 [CCGGTGTTGAACCGAATGTCGCGTCAAAACGTGGCAAGGGCGCGAGTGCAAAACCTGTCACGATGTGTCGATGCGAATGTGGTACGGGTTAGTTTGTGTTTTTTCTCTTTTGTTTTCATCTTTGAGAGTTTTCCAACAGTGGCACACCCGCGACGCAGAAGACATTCACACCGCCGGGGGGTGTCACTCTGTTTAGTGATAGTAGTTTATAGTTGAAATAAGTATGCGATTGTGTAAAATGAAGAATATTGAATTGAAATTACTTAAACAACACAATTAAGCGGAGGGGCTGGGCGCGATGTGATGAACACAGAGAGACAGAACACAGGTAAAAAGGGTGCCAAACAGAGGAAAATATTAACATGGAAGTGCATAGGGAGAATGAAGCACGGGAAATCAATAACAGGAAGCAAATCATCAATGAACGAACAACAAAACAGTAGCCAAGCCTAATCCCGATTAAGTAAAGCAGCATCTTTAGCGAAGTCGTTGCCTACAATTTATTTTGTTGGCCAAGTTCTTGGGATATGAGTACGACAGTACTCTGCTATTAGGCTTTACGTTGAGACACAGTTTGTTGCATTTTCTCTCACTACTACTGCGGCCTGGGGAAAGGGAAGTAAAGCCGG CCCATTACGCCCCCC ] [+] EMBL BM599243 [ ccgGCCAAACAGAGGAAAATATTAACATGGAAGTGCATAGGGAGAATGAAGCACGGGAAATCAATAACAGGAAGCAAATCATCAATGAACGAACAACAAAACAGTAGCCAAGCTTAAGCCCGGTTAAGTAAAGCAGCATCTTCAGCGAGGTCGTTGCCTACAATTCATTTTGTTGGCCTAGTTCTTGCGATATGCG AC ACAGTACTCTGCTATCAGGCTTTACGTTGAGACACAGTTTGTTGCATTTTCTCTCACTACTACTGCGGCCTGGGGAAAGTGAAGTATAGTCGGACCCATTACGCCCCCCCCAAACCACGGGAAGAAAACTAACACATTCGACTTTCTGCGATATTTAATAATTAGCTCCCCCTAACCTAAGCATAACGAAATAATAATGCATTAGCAAACAAACAAACAAACAAAAAGGTATCTTATCTCACAGAGTAGTGTTTGTGGCCCTTTACTTGTCGCTCATACTCTTCTCTCTTGCATTGATATTCCAACGTTCTTCTAGCGCTCCGTAATCTATGTTGTGAGAGACAAAACAAAAAAACGAACGCAAAAACACAGGTTTAGCAGTAGATGTGTACTTAAAAGGTTTAACTAAATTTCGT] consensusID : consensus_3960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [ATTACGCCCCCCCCCCCCCCAAACCACGGGAAGAAAACTAACACATTCGACTTTCTGCGATATTTAATAATTAGCTCCCCCTAACCTAAGCATAACGAAATAATACTGCATTAGCAAACAACACAGGTTTAGCAGTAGATGTGTACTTAAACGGTTTAACTAAATTTCGTGGCATAAAATAAGCCTCACATACTAACGTTGTAGAATTCAATCGAAATTTGATCGTTTCTGTTTGTTCGTGAACGTTTTGGCACTTCCGGTAAGCGGATTTTCGGGATCGGATCTTTGGAGCAAGCAAACCCAGAAAGCGAAAGAGTCAGATGAATTTTACGAAAACACGAACACAAATGCGCACACCCTGCAAGCGTGAAAGAGGAAGGAAGACGGTGATTTGCGCAACAGCAGCAAGCACACAGAGGGACACAATTTGTGGAATATCATTTTTATACAACTTGAAAACCAACCCTGCACACACATACACCACTTTTACACACATCCCCTCATCTCATACATGCATCATATGTAGTCAGTGTGCGATAGGGAAGGATAATAGCACAAAAGCGAAGCGGGA] [+] EMBL BX612741 [ATTACGCCCCCCCCCCCCCCAAACCACGGGAAGAAAACTAACACATTCGACTTTCTGCGATATTTAATAATTAGCTCCCCCTAACCTAAGCATAACGAAATAATACTGCATTAGCAAACAACACAGGTTTAGCAGTAGATGTGTACTTAAACGGTTTAACTAAATTTCGTGGCATAAAATAAGCCTCACATACTAACGTTGTAGAATTCAATCGAAATTTGATCGTTTCTGTTTGTTCGTGAACGTTTTGGCACTTCCGGTAAGCGGATTTTCGGGATCGGATCTTTGGAGCAAGCAAACCCAGAAAGCGAAAGAGTCAGATGAATTTTACGAAAACACGAACACAAATGCGCACACCCTGCAAGCGTGAAAGAGGAAGGAAGACGGTGATTTGCGCAACAGCAGCAAGCACACAGAGGGACACAATTTGTGGAATATCATTTTTATACAACTTGAAAACCAACCCTGCACACACATACACCACTTTTACACACATCCCCTCATCTCATACATGCATCATATGTAGTCAGTGTGCGATAGGGAAGGATAATAGCACAAAAGCGAAGCGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3960#0 CCGGTGTTGAACCGAATGTCGCGTCAAAACGTGGCAAGGGCGCGAGTGCAA--AACCTGT 58 consensus_3960#1 -----ATTACGCCCCCCCCCCCCCCAAACCACGGGAAGAAAACTAACACATTCGACTTTC 55 ** ** * * **** * ** *** * * ** ** * consensus_3960#0 CACGATGTGTCGATGCGAATGTGGTACGGGTTAGT--TTGTGTTTTTTCTCTTTTGTTTT 116 consensus_3960#1 TGCGATATTTAATAATTAGCTCCCCCTAACCTAAGCATAACGAAATAATACTGCATTAGC 115 **** * * * ** * * * ** * consensus_3960#0 CATCTTTGAGAGTTTTCCAACAGTGGCACACCCGCGACGCAGAAGACATTCACACCGCCG 176 consensus_3960#1 AAACAACACAGGTTTAGCAGTAGATGTGTACTT---AAACGGTTTAACTAAATTTCGTGG 172 * * **** ** ** * ** * * * * * * ** * consensus_3960#0 GGGGGTGTCACTCTGTTTAGTGATAGTAGTTTATAGTTGAAATAAGTATGCGATTGTGTA 236 consensus_3960#1 CATAAAATAAGCC--TCACATACTAACGTTGTAGAATTCAATCGAA-ATTTGATCGTTTC 229 * * * * * ** * ** * ** ** * ** *** ** * consensus_3960#0 AAATGAAGAATATTGAATTGAAATTACTTAAACAACACAATTAAGCGGAGGGGCTGGGCG 296 consensus_3960#1 ----------TGTTTGTTCGTGAACGTTTTGGCACTTCCGGTAAGCGGATTTTCGGGATC 279 * ** * * * ** ** * ******** * ** consensus_3960#0 CGATGTGATGAACACAGAGAGACAGAACACAGGTAAAAAGGGTGCCAAACAGAGGAAAAT 356 consensus_3960#1 GGATCTTTGGAGCAAGCAAACCCAGAAAGCGAAAGAGTCAGATG--AATTTTACGAAAAC 337 *** * ** ** * * ***** * * * ** ** * ***** consensus_3960#0 ATTAACATGGAAGTGCATAGGGAGAATGAAGCACGGGAAATCAATAACAGGAAGCAAATC 416 consensus_3960#1 ACGAACACAAATGCGCACACCCTGCA---AGCGTGAAAGAGGAA-----GGAAGACGGTG 389 * **** * * *** * * * *** * * * ** ***** * consensus_3960#0 ATCAATGAACGAACAACAAAACAGTAGCCAAGCCTAATCCCGATTAAGTAAAGCAGCATC 476 consensus_3960#1 ATTTGCGCAACAGCAGCAAGCACACAGAGGGACACAATTT-------GTGGAATATCATT 442 ** * * * ** *** ** * *** ** * * *** consensus_3960#0 TTTAGCGAAGTCGTTGCCTACAATTTATTTTGTTGGCCAAGTTCTTGGGATATGAGTACG 536 consensus_3960#1 TTTA--------------TACAA-----CTTGAAAACCAA---CCCTGCACACACATACA 480 **** ***** *** **** * * * * *** consensus_3960#0 ACAGTACTCTGCTATTAGGCTTTACGTTGAGACACAGTTTGTTGCATTTTCTCTCACTAC 596 consensus_3960#1 CCACT--TTTACACACATCCCCTCATCTCATACAT-GCATCATATGTAGTCAGTGTGCGA 537 ** * * * * * * * * * *** * * * * ** * consensus_3960#0 TACTGCGGCCTGGGGAAAGGGAAGTAAAGCCGGCCCATTACGCCCCCCCCAAACCACGGG 656 consensus_3960#1 TAGGGAAGGATAATAGCACAAAAGCGAAGCGGGA-------------------------- 571 ** * * * * *** **** ** consensus_3960#0 AAGAAAACTAACACATTCGACTTTCTGCGATATTTAATAATTAGCTCCCCCTAACCTAAG 716 consensus_3960#1 ------------------------------------------------------------ consensus_3960#0 CATAACGAAATAATAATGCATTAGCAAACAAACAAACAAACAAAAAGGTATCTTATCTCA 776 consensus_3960#1 ------------------------------------------------------------ consensus_3960#0 CAGAGTAGTGTTTGTGGCCCTTTACTTGTCGCTCATACTCTTCTCTCTTGCATTGATATT 836 consensus_3960#1 ------------------------------------------------------------ consensus_3960#0 CCAACGTTCTTCTAGCGCTCCGTAATCTATGTTGTGAGAGACAAAACAAAAAAACGAACG 896 consensus_3960#1 ------------------------------------------------------------ consensus_3960#0 CAAAAACACAGGTTTAGCAGTAGATGTGTACTTAAAAGGTTTAACTAAATTTCGT 951 consensus_3960#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||