These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3967#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [GCAAGAATTGNCCGAGGNTTAATCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAAGCAGAGACTCCTGCTCGACGGTAACGAGGGTGGCAAGGAATCATCGGCCAACAAGTCCACCGTCAAGTCACCGGTGCCCGTCGACCCGAAATGGGAAAAGTTTGCGTGTGGCAATGACGCGCGATCATATGATCGTTTCGCAGCAAGCACACGAGCTGCCTGAATAAAGACATCGCTCCAGCCACGATCGTTGAATTTCTACAAGTAGAAGACGATTGACACACACGCACACCCGTGCGTGGTGGTTGCTGATGTCCCACTTTATTGTGCAAAATGCAATCGATTTGAAATGGGTAGAATCGTTGCTCTTTAAACCTTAAGTTAAGTGTTAGGACAGCGGTACAGCAGCGTGTGCACCGTGCGCGTGGTTAATGTTAAGCAAACGATTCTTCCCCCCGTCAGAAGTCGTATTCTTCTGGTGGTTAGTTTAGACGGNGGGAATTGGGGAAAACGGGGTACGCGTTGCTCTCTTACCTAAAGTCCGCAAGAGGACGAGTTTATGGTAGAGGGCATCTAAAGTAGGAAGTAAGCGTCTTGAAACTAACCAA] [+] EMBL AL696930 [GCAAGAATTGNCCGAGGNTTAATCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAAGCAGAGACTCCTGCTCGACGGTAACGAGGGTGGCAAGGAATCATCGGCCAACAAGTCCACCGTCAAGTCACCGGTGCCCGTCGACCCGAAATGGGAAAAGTTTGCGTGTGGCAATGACGCGCGATCATATGATCGTTTCGCAGCAAGCACACGAGCTGCCTGAATAAAGACATCGCTCCAGCCACGATCGTTGAATTTCTACAAGTAGAAGACGATTGACACACACGCACACCCGTGCGTGGTGGTTGCTGATGTCCCACTTTATTGTGCAAAATGCAATCGATTTGAAATGGGTAGAATCGTTGCTCTTTAAACCTTAAGTTAAGTGTTAGGACAGCGGTACAGCAGCGTGTGCACCGTGCGCGTGGTTAATGTTAAGCAAACGATTCTTCCCCCCGTCAGAAGTCGTATTCTTCTGGTGGTTAGTTTAGACGGNGGGAATTGGGGAAAACGGGGTACGCGTTGCTCTCTTACCTAAAGTCCGCAAGAGGACGAGTTTATGGTAGAGGGCATCTAAAGTAGGAAGTAAGCGTCTTGAAACTAACCAA] consensusID : consensus_3967#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CGTCAAACGAGCGGCAGTTAAAACGACACTAGTCTATTAAGCACGCCAGTTCCAGCGAAGGATGTGTCGATCAAGATGGAAGCGAAGAAGGATCANCGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCNGAGATCATGAACCAAGAGCAGGCAAGCGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAGCAGAGCTCCTGCTCGACGGTAACGAAGGT] [+] EMBL BX627337 [CGTCAAACGAGCGGCAGTTAAAACGACACTAGTCTATTAAGCACGCCAGTTCCAGCGAAGGATGTGTCGATCAAGATGGAAGCGAAGAAGGATCANCGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCNGAGATCATGAACCAAGAGCAGGCAAGCGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAGCAGAGCTCCTGCTCGACGGTAACGAAGGT] consensusID : consensus_3967#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [TCGCCCCGAGGCGATCAGATGGAAGCGAAGAAGGATCAGGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCGGAGATCATGAACCAAGAGCAGGCAAGCTGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGAT] [+] EMBL AL931324 [TCGCCCCGAGGCGATCAGATGGAAGCGAAGAAGGATCAGGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCGGAGATCATGAACCAAGAGCAGGCAAGCTGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3967#1 ----------------------CGTCAAACGAGCGGCAGTTAAAACGACACTAGTCTATT 38 consensus_3967#2 ------------------------------------------------------------ consensus_3967#0 GCAAGAATTGNCCGAGGNTTAATCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTC 60 consensus_3967#1 AAGCACGCCAGTTCCAGCGAAGGATGTGTCGATCAAGATG---GAAGCGAAGAAGGATCA 95 consensus_3967#2 ------------------TCGCCCCGAGGCGATCA-GATG---GAAGCGAAGAAGGATCA 38 consensus_3967#0 GCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAAG 120 * ** * * ** ** ** * ** consensus_3967#1 NCGAGAAGGCAGCT-GAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGC 154 consensus_3967#2 G-GAGAAGGCAGCT-GAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGC 96 consensus_3967#0 CAGAGACTCCTGCTCGACGGTAACGAGGGTGGCAAGGAATCATCGGCCAACAAGTCCACC 180 **** * *** ** * * **** ****** * * * *** * * consensus_3967#1 GGCAA---ACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCC 211 consensus_3967#2 GGCAA---ACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCC 153 consensus_3967#0 GTCAAGTCACCGGTGCCCGTCGACCCG---AAATGGGAAAAGTTTGCGTGTGGCAATGAC 237 * *** *** ***** **** *** * * * *** * * * * * consensus_3967#1 GAGCTGGGAAAGAGACGTTCCG----AGATCTACATCCCACCGAGTCCGGCACGTATCGG 267 consensus_3967#2 GAGCTGGGAAAGAGACGTTCCG----AGATCTACATCCCACCGAGTCCGGCACGTATCGG 209 consensus_3967#0 GCGCGATCATATGATCGTTTCGCAGCAAGCACACGAGCTGCCTGAATAAAGACATCGCTC 297 * ** * * **** ** * ** * ** ** * * consensus_3967#1 CGAGGAC-ATTGCNGAGATCATG-AACCAAGAGCAGGCAAGC-GAAACTTCC-TCCACGC 323 consensus_3967#2 CGAGGAC-ATTGCGGAGATCATG-AACCAAGAGCAGGCAAGCTGAAACTTCC-TCCACGC 266 consensus_3967#0 CAGCCACGATCGTTGAATTTCTACAAGTAGAAGACGATTGACACACACGCACACCCGTGC 357 * ** ** * ** * * ** * ** * * * ** * ** ** consensus_3967#1 -TGGCAAGTGGCAGCGACACA-TCGGCCGGCAACAAAACGGTC-ATCAGCAACAA-TGGC 379 consensus_3967#2 -TGGCAAGTGGCAGCGACACA-TCGGCCGGCAACAAAACGGTC-ATCAGCAACAA-TGGC 322 consensus_3967#0 GTGGTGGTTGCTGATGTCCCACTTTATTGTGCAAAATGCAATCGATTTGAAATGGGTAGA 417 *** ** * * ** * * * ** * ** ** * ** * * consensus_3967#1 AGTGGCACGC---AAACGACAGATTCGAAGG-AAAACACACTTCCCTCACGAAGCGGACA 435 consensus_3967#2 AGTGGCACGC---AAACGACAGATTCGAAGG-AAAACACACTTCCCTCACGAAGCGGACA 378 consensus_3967#0 ATCGTTGCTCTTTAAACCTTAAGTTAAGTGTTAGGACAGCGGTACAGCAGCGTGTGCACC 477 * * * * **** * ** * * *** * * ** * * ** consensus_3967#1 GGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTC------TTTTCGCAGCA 489 consensus_3967#2 GGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTC------TTTTCGCAGCA 432 consensus_3967#0 GTGCGCGTGGTTAATGT-TAAGCAAACGATTCTTCCCCCCGTCAGAAGTCGTATTCTTCT 536 * ** * *** *** * ** * ** ***** * * * consensus_3967#1 GTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGA 549 consensus_3967#2 GTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGA 492 consensus_3967#0 GGTGGTTAGTTTAGACG-GNGGGAATTGGGGAAAACGGGGTACGCGTTGCTCTCTT--AC 593 * ** * ** *** * * ** * * ***** * * ** *** * consensus_3967#1 CTCGGGTGTG-ACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAGCAGAGCTCCTGC 608 consensus_3967#2 CTCGGGTGTG-ACGCTGTCGCCCTCGTTGCGCGAT------------------------- 526 consensus_3967#0 CTAAAGTCCGCAAGAGGACGAGTTTATGGTAGAGGGCATCTAAAGTAGGAAGTAAGCGTC 653 ** ** * * * * ** * * * consensus_3967#1 TCGACGGTAACGAAGGT 625 consensus_3967#2 ----------------- consensus_3967#0 TTGAAACTAACCAA--- 667 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||