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Anopheles gambiae
cluster # 3967 cluster # 3967       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3967#0 length = 667 sequences # 1  
consensus_3967#1 length = 625 sequences # 1  
consensus_3967#2 length = 526 sequences # 1  

consensusID : consensus_3967#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence
                              [GCAAGAATTGNCCGAGGNTTAATCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAAGCAGAGACTCCTGCTCGACGGTAACGAGGGTGGCAAGGAATCATCGGCCAACAAGTCCACCGTCAAGTCACCGGTGCCCGTCGACCCGAAATGGGAAAAGTTTGCGTGTGGCAATGACGCGCGATCATATGATCGTTTCGCAGCAAGCACACGAGCTGCCTGAATAAAGACATCGCTCCAGCCACGATCGTTGAATTTCTACAAGTAGAAGACGATTGACACACACGCACACCCGTGCGTGGTGGTTGCTGATGTCCCACTTTATTGTGCAAAATGCAATCGATTTGAAATGGGTAGAATCGTTGCTCTTTAAACCTTAAGTTAAGTGTTAGGACAGCGGTACAGCAGCGTGTGCACCGTGCGCGTGGTTAATGTTAAGCAAACGATTCTTCCCCCCGTCAGAAGTCGTATTCTTCTGGTGGTTAGTTTAGACGGNGGGAATTGGGGAAAACGGGGTACGCGTTGCTCTCTTACCTAAAGTCCGCAAGAGGACGAGTTTATGGTAGAGGGCATCTAAAGTAGGAAGTAAGCGTCTTGAAACTAACCAA]

[+] EMBL AL696930             [GCAAGAATTGNCCGAGGNTTAATCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAAGCAGAGACTCCTGCTCGACGGTAACGAGGGTGGCAAGGAATCATCGGCCAACAAGTCCACCGTCAAGTCACCGGTGCCCGTCGACCCGAAATGGGAAAAGTTTGCGTGTGGCAATGACGCGCGATCATATGATCGTTTCGCAGCAAGCACACGAGCTGCCTGAATAAAGACATCGCTCCAGCCACGATCGTTGAATTTCTACAAGTAGAAGACGATTGACACACACGCACACCCGTGCGTGGTGGTTGCTGATGTCCCACTTTATTGTGCAAAATGCAATCGATTTGAAATGGGTAGAATCGTTGCTCTTTAAACCTTAAGTTAAGTGTTAGGACAGCGGTACAGCAGCGTGTGCACCGTGCGCGTGGTTAATGTTAAGCAAACGATTCTTCCCCCCGTCAGAAGTCGTATTCTTCTGGTGGTTAGTTTAGACGGNGGGAATTGGGGAAAACGGGGTACGCGTTGCTCTCTTACCTAAAGTCCGCAAGAGGACGAGTTTATGGTAGAGGGCATCTAAAGTAGGAAGTAAGCGTCTTGAAACTAACCAA]


>consensus_3967#0 GCAAGAATTGNCCGAGGNTTAATCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTC GCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAAG CAGAGACTCCTGCTCGACGGTAACGAGGGTGGCAAGGAATCATCGGCCAACAAGTCCACC GTCAAGTCACCGGTGCCCGTCGACCCGAAATGGGAAAAGTTTGCGTGTGGCAATGACGCG CGATCATATGATCGTTTCGCAGCAAGCACACGAGCTGCCTGAATAAAGACATCGCTCCAG CCACGATCGTTGAATTTCTACAAGTAGAAGACGATTGACACACACGCACACCCGTGCGTG GTGGTTGCTGATGTCCCACTTTATTGTGCAAAATGCAATCGATTTGAAATGGGTAGAATC GTTGCTCTTTAAACCTTAAGTTAAGTGTTAGGACAGCGGTACAGCAGCGTGTGCACCGTG CGCGTGGTTAATGTTAAGCAAACGATTCTTCCCCCCGTCAGAAGTCGTATTCTTCTGGTG GTTAGTTTAGACGGNGGGAATTGGGGAAAACGGGGTACGCGTTGCTCTCTTACCTAAAGT CCGCAAGAGGACGAGTTTATGGTAGAGGGCATCTAAAGTAGGAAGTAAGCGTCTTGAAAC TAACCAA



consensusID : consensus_3967#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence
                              [CGTCAAACGAGCGGCAGTTAAAACGACACTAGTCTATTAAGCACGCCAGTTCCAGCGAAGGATGTGTCGATCAAGATGGAAGCGAAGAAGGATCANCGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCNGAGATCATGAACCAAGAGCAGGCAAGCGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAGCAGAGCTCCTGCTCGACGGTAACGAAGGT]

[+] EMBL BX627337             [CGTCAAACGAGCGGCAGTTAAAACGACACTAGTCTATTAAGCACGCCAGTTCCAGCGAAGGATGTGTCGATCAAGATGGAAGCGAAGAAGGATCANCGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCNGAGATCATGAACCAAGAGCAGGCAAGCGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAGCAGAGCTCCTGCTCGACGGTAACGAAGGT]


>consensus_3967#1 CGTCAAACGAGCGGCAGTTAAAACGACACTAGTCTATTAAGCACGCCAGTTCCAGCGAAG GATGTGTCGATCAAGATGGAAGCGAAGAAGGATCANCGAGAAGGCAGCTGAAAATGAAGA GGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCG CACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTA CATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCNGAGATCATGAACCAAGAGCA GGCAAGCGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAAC GGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCC CTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTT TTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCT TATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAGCAGA GCTCCTGCTCGACGGTAACGAAGGT



consensusID : consensus_3967#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence
                              [TCGCCCCGAGGCGATCAGATGGAAGCGAAGAAGGATCAGGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCGGAGATCATGAACCAAGAGCAGGCAAGCTGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGAT]

[+] EMBL AL931324             [TCGCCCCGAGGCGATCAGATGGAAGCGAAGAAGGATCAGGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCGGAGATCATGAACCAAGAGCAGGCAAGCTGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGAT]


>consensus_3967#2 TCGCCCCGAGGCGATCAGATGGAAGCGAAGAAGGATCAGGAGAAGGCAGCTGAAAATGAA GAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCG CGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATC TACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCGGAGATCATGAACCAAGAG CAGGCAAGCTGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAA AACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACT TCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGT CTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTC GCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3967#1      ----------------------CGTCAAACGAGCGGCAGTTAAAACGACACTAGTCTATT 38
consensus_3967#2      ------------------------------------------------------------
consensus_3967#0      GCAAGAATTGNCCGAGGNTTAATCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTC 60
                                                                                  

consensus_3967#1      AAGCACGCCAGTTCCAGCGAAGGATGTGTCGATCAAGATG---GAAGCGAAGAAGGATCA 95
consensus_3967#2      ------------------TCGCCCCGAGGCGATCA-GATG---GAAGCGAAGAAGGATCA 38
consensus_3967#0      GCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAAG 120
                                                 * **  *  * **   **  **  *   **   

consensus_3967#1      NCGAGAAGGCAGCT-GAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGC 154
consensus_3967#2      G-GAGAAGGCAGCT-GAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGC 96
consensus_3967#0      CAGAGACTCCTGCTCGACGGTAACGAGGGTGGCAAGGAATCATCGGCCAACAAGTCCACC 180
                        ****   * *** **   * * **** ******      * *  *    ***   * *

consensus_3967#1      GGCAA---ACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCC 211
consensus_3967#2      GGCAA---ACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCC 153
consensus_3967#0      GTCAAGTCACCGGTGCCCGTCGACCCG---AAATGGGAAAAGTTTGCGTGTGGCAATGAC 237
                      * ***   *** *****  **** ***   *    *  *  ***   *   *  *  * *

consensus_3967#1      GAGCTGGGAAAGAGACGTTCCG----AGATCTACATCCCACCGAGTCCGGCACGTATCGG 267
consensus_3967#2      GAGCTGGGAAAGAGACGTTCCG----AGATCTACATCCCACCGAGTCCGGCACGTATCGG 209
consensus_3967#0      GCGCGATCATATGATCGTTTCGCAGCAAGCACACGAGCTGCCTGAATAAAGACATCGCTC 297
                      * **    * *    **** **    *     **   *  **         ** *  *  

consensus_3967#1      CGAGGAC-ATTGCNGAGATCATG-AACCAAGAGCAGGCAAGC-GAAACTTCC-TCCACGC 323
consensus_3967#2      CGAGGAC-ATTGCGGAGATCATG-AACCAAGAGCAGGCAAGCTGAAACTTCC-TCCACGC 266
consensus_3967#0      CAGCCACGATCGTTGAATTTCTACAAGTAGAAGACGATTGACACACACGCACACCCGTGC 357
                      *    ** ** *  **  *  *  **  *  **  *     *  * **   *  **  **

consensus_3967#1      -TGGCAAGTGGCAGCGACACA-TCGGCCGGCAACAAAACGGTC-ATCAGCAACAA-TGGC 379
consensus_3967#2      -TGGCAAGTGGCAGCGACACA-TCGGCCGGCAACAAAACGGTC-ATCAGCAACAA-TGGC 322
consensus_3967#0      GTGGTGGTTGCTGATGTCCCACTTTATTGTGCAAAATGCAATCGATTTGAAATGGGTAGA 417
                       ***    **     * * ** *     *   * **  *  ** **  * **    * * 

consensus_3967#1      AGTGGCACGC---AAACGACAGATTCGAAGG-AAAACACACTTCCCTCACGAAGCGGACA 435
consensus_3967#2      AGTGGCACGC---AAACGACAGATTCGAAGG-AAAACACACTTCCCTCACGAAGCGGACA 378
consensus_3967#0      ATCGTTGCTCTTTAAACCTTAAGTTAAGTGTTAGGACAGCGGTACAGCAGCGTGTGCACC 477
                      *  *   * *   ****   *  **    *  *  ***    * *  **    * * ** 

consensus_3967#1      GGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTC------TTTTCGCAGCA 489
consensus_3967#2      GGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTC------TTTTCGCAGCA 432
consensus_3967#0      GTGCGCGTGGTTAATGT-TAAGCAAACGATTCTTCCCCCCGTCAGAAGTCGTATTCTTCT 536
                      *    **  *   ***   *** *  **     * ** *****        *   *  * 

consensus_3967#1      GTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGA 549
consensus_3967#2      GTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGA 492
consensus_3967#0      GGTGGTTAGTTTAGACG-GNGGGAATTGGGGAAAACGGGGTACGCGTTGCTCTCTT--AC 593
                      *  **  * **  ***  * *    ** * * *****  *  *  ** ***    *    

consensus_3967#1      CTCGGGTGTG-ACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAGCAGAGCTCCTGC 608
consensus_3967#2      CTCGGGTGTG-ACGCTGTCGCCCTCGTTGCGCGAT------------------------- 526
consensus_3967#0      CTAAAGTCCGCAAGAGGACGAGTTTATGGTAGAGGGCATCTAAAGTAGGAAGTAAGCGTC 653
                      **   **  * * *  * **   *  * *                               

consensus_3967#1      TCGACGGTAACGAAGGT 625
consensus_3967#2      -----------------
consensus_3967#0      TTGAAACTAACCAA--- 667
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)