cluster # 3968

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Anopheles gambiae
cluster # 3968 cluster # 3968 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3968#0 length = 783 sequences # 1

consensus_3968#1 length = 389 sequences # 1
consensus_3968#2 length = 341 sequences # 1

consensusID : consensus_3968#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 783
fasta sequence

                              [AGCAGTTTAATAAAAAAAAAAAATCCGTGCAGCAAAATGCCCGCTGGTGGAGCTGGCCAAGAAGCTGACCGGCCGGAGCGAGTACACGATGGCGTCGATCTACTCGCTCATGGATACGCTGTTGCCGCAGGAAAAGGAGGATGTGATCAAGGAGCTGACGCGTCGCTGCGATCAGGAGCTAACGGAGCTGCTCGGTGACAATGGGGTACTGTTCTACCACAGCACTACGCATGCGGCACCGTACCATTACGGGGCGTTCGTGAACGTGTACAACTTTAGCTACTGGTGTCTGTTTAACGTGCTGCACGTACCGGCCACCCAGGTGCCGCTCGGGCTGGATGGGGATGGGCTACCGCTCGGCATACAGGTCGTGGCCAGTCGTAACCGGGACCGGCACTGCTTGGCGGTGGCGGAAGAGATCGAGCGCGTGTTTAACGGGCGCATTCCACCGTTCATTGTGGATTAGTTGGGGTGTTTCTCAGTTTCTTTTCGCCCTAAGGACAGTCGCACTACGATGTCCAATATTGATCGGTCATGGAGGCAGAGTGAAGTGTAGGTCAGTTGGGTTATATTATTTATTCGTTAGCTTATGCAATGGTCGTGTTTGTTTGTTCTTCTTTAAATTCTTGGTCGTTAAATTAAACTCGTAACAAATAATACACCTCTTCTTCCAATGCGGTCAATTATCGTTGTACATGGCTAGTAAGAGTAGTAAGTCGAGGGAACTTTTTGGGTCATTTTGGGGGTAAAAAAGCACTAAACAAAAGCCTCTCTAAACTGAAC]

[+] EMBL BX613505             [AGCAGTTTAATAAAAAAAAAAAATCCGTGCAGCAAAATGCCCGCTGGTGGAGCTGGCCAAGAAGCTGACCGGCCGGAGCGAGTACACGATGGCGTCGATCTACTCGCTCATGGATACGCTGTTGCCGCAGGAAAAGGAGGATGTGATCAAGGAGCTGACGCGTCGCTGCGATCAGGAGCTAACGGAGCTGCTCGGTGACAATGGGGTACTGTTCTACCACAGCACTACGCATGCGGCACCGTACCATTACGGGGCGTTCGTGAACGTGTACAACTTTAGCTACTGGTGTCTGTTTAACGTGCTGCACGTACCGGCCACCCAGGTGCCGCTCGGGCTGGATGGGGATGGGCTACCGCTCGGCATACAGGTCGTGGCCAGTCGTAACCGGGACCGGCACTGCTTGGCGGTGGCGGAAGAGATCGAGCGCGTGTTTAACGGGCGCATTCCACCGTTCATTGTGGATTAGTTGGGGTGTTTCTCAGTTTCTTTTCGCCCTAAGGACAGTCGCACTACGATGTCCAATATTGATCGGTCATGGAGGCAGAGTGAAGTGTAGGTCAGTTGGGTTATATTATTTATTCGTTAGCTTATGCAATGGTCGTGTTTGTTTGTTCTTCTTTAAATTCTTGGTCGTTAAATTAAACTCGTAACAAATAATACACCTCTTCTTCCAATGCGGTCAATTATCGTTGTACATGGCTAGTAAGAGTAGTAAGTCGAGGGAACTTTTTGGGTCATTTTGGGGGTAAAAAAGCACTAAACAAAAGCCTCTCTAAACTGAAC]




>consensus_3968#0
AGCAGTTTAATAAAAAAAAAAAATCCGTGCAGCAAAATGCCCGCTGGTGGAGCTGGCCAA
GAAGCTGACCGGCCGGAGCGAGTACACGATGGCGTCGATCTACTCGCTCATGGATACGCT
GTTGCCGCAGGAAAAGGAGGATGTGATCAAGGAGCTGACGCGTCGCTGCGATCAGGAGCT
AACGGAGCTGCTCGGTGACAATGGGGTACTGTTCTACCACAGCACTACGCATGCGGCACC
GTACCATTACGGGGCGTTCGTGAACGTGTACAACTTTAGCTACTGGTGTCTGTTTAACGT
GCTGCACGTACCGGCCACCCAGGTGCCGCTCGGGCTGGATGGGGATGGGCTACCGCTCGG
CATACAGGTCGTGGCCAGTCGTAACCGGGACCGGCACTGCTTGGCGGTGGCGGAAGAGAT
CGAGCGCGTGTTTAACGGGCGCATTCCACCGTTCATTGTGGATTAGTTGGGGTGTTTCTC
AGTTTCTTTTCGCCCTAAGGACAGTCGCACTACGATGTCCAATATTGATCGGTCATGGAG
GCAGAGTGAAGTGTAGGTCAGTTGGGTTATATTATTTATTCGTTAGCTTATGCAATGGTC
GTGTTTGTTTGTTCTTCTTTAAATTCTTGGTCGTTAAATTAAACTCGTAACAAATAATAC
ACCTCTTCTTCCAATGCGGTCAATTATCGTTGTACATGGCTAGTAAGAGTAGTAAGTCGA
GGGAACTTTTTGGGTCATTTTGGGGGTAAAAAAGCACTAAACAAAAGCCTCTCTAAACTG
AAC

consensusID : consensus_3968#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [ATCTGCTCCCCCTCATGCAGGTACTGGTGGGTCCGGAAAAGTGCACCAGCCTGCGCTTCGACGAACCGGTCGATGTGCGCAAGCTGCGCTACTTCTACATCACTGAATCGGGCGACATTAAGTGCAGTGCGGTGCAACCCTCGCTACAGAAAGCGATGGACCGCGTGGTGCAGCACTTTGGCGAGATTGCACCGGCCGGTGTGCGCAAGGTAACGCTCAGCGGCACCGACCGAACGACCAACATGTGGCGCTACTGGATGACGCAGGAGCCGGCCAACTTTGGCACGCTGCTGGGCAATGGGAAACCGCTCAGCCCGCTGGTGGAGCTGGCCAAGAAGCTGACCGGCCGGAGCGAGTACACGATGGCGTCGATCTACTCGCTCATGGAT]

[+] EMBL BX620137             [ATCTGCTCCCCCTCATGCAGGTACTGGTGGGTCCGGAAAAGTGCACCAGCCTGCGCTTCGACGAACCGGTCGATGTGCGCAAGCTGCGCTACTTCTACATCACTGAATCGGGCGACATTAAGTGCAGTGCGGTGCAACCCTCGCTACAGAAAGCGATGGACCGCGTGGTGCAGCACTTTGGCGAGATTGCACCGGCCGGTGTGCGCAAGGTAACGCTCAGCGGCACCGACCGAACGACCAACATGTGGCGCTACTGGATGACGCAGGAGCCGGCCAACTTTGGCACGCTGCTGGGCAATGGGAAACCGCTCAGCCCGCTGGTGGAGCTGGCCAAGAAGCTGACCGGCCGGAGCGAGTACACGATGGCGTCGATCTACTCGCTCATGGAT]




>consensus_3968#1
ATCTGCTCCCCCTCATGCAGGTACTGGTGGGTCCGGAAAAGTGCACCAGCCTGCGCTTCG
ACGAACCGGTCGATGTGCGCAAGCTGCGCTACTTCTACATCACTGAATCGGGCGACATTA
AGTGCAGTGCGGTGCAACCCTCGCTACAGAAAGCGATGGACCGCGTGGTGCAGCACTTTG
GCGAGATTGCACCGGCCGGTGTGCGCAAGGTAACGCTCAGCGGCACCGACCGAACGACCA
ACATGTGGCGCTACTGGATGACGCAGGAGCCGGCCAACTTTGGCACGCTGCTGGGCAATG
GGAAACCGCTCAGCCCGCTGGTGGAGCTGGCCAAGAAGCTGACCGGCCGGAGCGAGTACA
CGATGGCGTCGATCTACTCGCTCATGGAT

consensusID : consensus_3968#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [GCTGACGCGTCGCTGCCGATCAGGAGCTAACGGAGCTGCTCGGTGACGATGGGGTACTGTTCTACCACAGGACTAACCACGCGGCACCGTACCATTACGGGGCCGTTCGTGAACGTGTACAACTTTAGCTACTGGTGTCTGTTTAACGTGCTGCACGTACCAGCAACCAGGTGCCGTCGGGCTGGATGGGGATGGGCTACCGCTCGGCATACACGGTTGTGGCGAGCCGTAACCGGGACCGGCACTGCTTGGCGGTGGCGGAAAGACGATCGAGCGCGTGTTTAACCGGGCGCATTCCACCGTTCATTGTGGATTAGTNNGNGGGTGTATACATTAGTTAT]

[+] EMBL AL696985             [GCTGACGCGTCGCTGCCGATCAGGAGCTAACGGAGCTGCTCGGTGACGATGGGGTACTGTTCTACCACAGGACTAACCACGCGGCACCGTACCATTACGGGGCCGTTCGTGAACGTGTACAACTTTAGCTACTGGTGTCTGTTTAACGTGCTGCACGTACCAGCAACCAGGTGCCGTCGGGCTGGATGGGGATGGGCTACCGCTCGGCATACACGGTTGTGGCGAGCCGTAACCGGGACCGGCACTGCTTGGCGGTGGCGGAAAGACGATCGAGCGCGTGTTTAACCGGGCGCATTCCACCGTTCATTGTGGATTAGTNNGNGGGTGTATACATTAGTTAT]




>consensus_3968#2
GCTGACGCGTCGCTGCCGATCAGGAGCTAACGGAGCTGCTCGGTGACGATGGGGTACTGT
TCTACCACAGGACTAACCACGCGGCACCGTACCATTACGGGGCCGTTCGTGAACGTGTAC
AACTTTAGCTACTGGTGTCTGTTTAACGTGCTGCACGTACCAGCAACCAGGTGCCGTCGG
GCTGGATGGGGATGGGCTACCGCTCGGCATACACGGTTGTGGCGAGCCGTAACCGGGACC
GGCACTGCTTGGCGGTGGCGGAAAGACGATCGAGCGCGTGTTTAACCGGGCGCATTCCAC
CGTTCATTGTGGATTAGTNNGNGGGTGTATACATTAGTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3968#0      AGCAGTTTAATAAAAAAAAAAAATCCGTGCAGCAAAATGCCCGCTGGTGGAGCTGGCCAA 60
consensus_3968#2      ------------------------------------------------------------
consensus_3968#1      ------------------------------------------------------------
                                                                                  

consensus_3968#0      GAAGCTGACCGGCCGGAGCGAGTACACGATGGCGTCGATCTACTCGCTCATGGATACGCT 120
consensus_3968#2      ------------------------------------------------------------
consensus_3968#1      ------------------------------------------------------------
                                                                                  

consensus_3968#0      GTTGCCGCAGGAAAAGGAGGATGTGATCAAGGAGCTGACGCGTCGCTGC-GATCAGGAGC 179
consensus_3968#2      ---------------------------------GCTGACGCGTCGCTGCCGATCAGGAGC 27
consensus_3968#1      --ATCTGCTCCCCCTCATGCAGGTACTGGTGGGTCCGGAAAAGTGCACCAGCCTGCGCTT 58
                                                        * *       **  * *     *   

consensus_3968#0      TAACGGAGCTGCTCGGTGACAATGGGGTACTGTTCTACCACAGCACT-ACGCATGCGGCA 238
consensus_3968#2      TAACGGAGCTGCTCGGTGACGATGGGGTACTGTTCTACCACAGGACT-AACCACGCGGCA 86
consensus_3968#1      CGACGAA-CCGGTCGATGTGCGCAAGCTGCGCTACTTCTACATCACTGAATCGGGCGACA 117
                        *** * * * *** **       * * *  * ** * ***  *** *  *  *** **

consensus_3968#0      CCGTAC-CATTACGGGGC-GTTCGTGAACGTGTACAACTTTAGCTAC-TGGTGT--CTGT 293
consensus_3968#2      CCGTAC-CATTACGGGGCCGTTCGTGAACGTGTACAACTTTAGCTAC-TGGTGT--CTGT 142
consensus_3968#1      TTAAGTGCAGTGCGGTGCAACCCTCGCTACAGAAAGCGATGGACCGCGTGGTGCAGCACT 177
                             ** * *** **    *  *     * *     *   *  * *****   *  *

consensus_3968#0      TTAACGTG-CTGCACGTACCGGCCACCC--AGGTGCCGCTCGGGCTGGATGGG--GATGG 348
consensus_3968#2      TTAACGTG-CTGCACGTACCAGCAACC---AGGTGCCG-TCGGGCTGGATGGG--GATGG 195
consensus_3968#1      TTGGCGAGATTGCACCGGCCGGTGTGCGCAAGGTAACGCTCAG-CGGCACCGACCGAACG 236
                      **  ** *  *****   ** *    *   ****  ** ** * * * *  *   **  *

consensus_3968#0      GCTACCGCTCGGCATACA-GGTCGTGGCCAGTCGTAACCGGGACCGGCACTGCTTGGCGG 407
consensus_3968#2      GCTACCGCTCGGCATACACGGTTGTGGCGAGCCGTAACCGGGACCGGCACTGCTTGGCGG 255
consensus_3968#1      ACCAACATGTGGCGCTACTGGATGACGCAGGAGCCGGCCAACTTTGGCAC-GCTGCTGGG 295
                       * * *    ***      **  *  **  *      **      ***** ***    **

consensus_3968#0      TGGCGGAAGA--GATCGAGC-GCGTGTTTAAC-GGGC--GCATTCCACCGTTCATTGTGG 461
consensus_3968#2      TGGCGGAAAGACGATCGAGC-GCGTGTTTAACCGGGC--GCATTCCACCGTTCATTGTGG 312
consensus_3968#1      CAATGGGAAACCGCTCAGCCCGCTGGTGGAGCTGGCCAAGAAGCTGACCGGCCGGAGCGA 355
                          ** *    * **   * **  **  * * ** *  * *    ****  *   * * 

consensus_3968#0      ATTAGTTGGGGTGTTTCTCAGTTTCTTTTCGCCCTAAGGACAGTCGCACTACGATGTCCA 521
consensus_3968#2      ATTAGTNNGNGGGTGTATACATTAGTTAT------------------------------- 341
consensus_3968#1      GTACACGATGGCGTCGATCTACTCGCTCATGGAT-------------------------- 389
                       *        * **   *    *   *                                 

consensus_3968#0      ATATTGATCGGTCATGGAGGCAGAGTGAAGTGTAGGTCAGTTGGGTTATATTATTTATTC 581
consensus_3968#2      ------------------------------------------------------------
consensus_3968#1      ------------------------------------------------------------
                                                                                  

consensus_3968#0      GTTAGCTTATGCAATGGTCGTGTTTGTTTGTTCTTCTTTAAATTCTTGGTCGTTAAATTA 641
consensus_3968#2      ------------------------------------------------------------
consensus_3968#1      ------------------------------------------------------------
                                                                                  

consensus_3968#0      AACTCGTAACAAATAATACACCTCTTCTTCCAATGCGGTCAATTATCGTTGTACATGGCT 701
consensus_3968#2      ------------------------------------------------------------
consensus_3968#1      ------------------------------------------------------------
                                                                                  

consensus_3968#0      AGTAAGAGTAGTAAGTCGAGGGAACTTTTTGGGTCATTTTGGGGGTAAAAAAGCACTAAA 761
consensus_3968#2      ------------------------------------------------------------
consensus_3968#1      ------------------------------------------------------------
                                                                                  

consensus_3968#0      CAAAAGCCTCTCTAAACTGAAC 783
consensus_3968#2      ----------------------
consensus_3968#1      ----------------------