These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [TTGCGACGGAACAATTCAAAACAGCAGCAGCAACAAAAGCAACAAAATAATAATGAAAGTACAGTGCGCAGGAAAACTTTTTACTCTAGAAATAGTAGCAAAACATGTAAACTAATTATTAGCCGACGAAGCAGCAGCAGAAGCCGAACAGAACAAAACCCAACAAAGTGGGAAAAACAGCAGCAACAAAGTACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAATACACAGAAATGAAACTAGAAACGAATTATAGCCGAGCAGAATCGAACAACAAGCAGAAAGTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTAACATTATTATCCGGGGCTAGTAGTGGCGCCAGTGCGGCGTACCGTTGGGTGGCAAAAAAAACACGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACACCGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTTCCCAGGCGGGACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTTTGC] [+] EMBL BX624804 [TTGCGACGGAACAATTCAAAACAGCAGCAGCAACAAAAGCAACAAAATAATAATGAAAGTACAGTGCGCAGGAAAACTTTTTACTCTAGAAATAGTAGCAAAACATGTAAACTAATTATTAGCCGACGAAGCAGCAGCAGAAGCCGAACAGAACAAAACCCAACAAAGTGGGAAAAACAGCAGCAACAAAGTACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAATACACAGAAATGAAACTAGAAACGAATTATAGCCGAGCAGAATCGAACAACAAGCAGAAAGTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTAACATTATTATCCGGGGCTAGTAGTGGCGCCAGTGCGGCGTACCGTTGGGTGGCAAAAAAAACACGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACACCGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTTCCCAGGCGGGACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTTTGC] consensusID : consensus_3974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [CCGCACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAACACGCAGAAATGAAACTAGAAACGAATTATAGACGAGCAGAATCGAACAACAAGCAGAAAGTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTAACATTATTATCCGGGGTTAGTGCGGCGTACCGTTGGGTGGCAAAAAAAAAACACGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGGCGGTGACACCGTACCATACACAGCAGCAATCCTGTCTTATGAGCGCATTACCCCAGGCATTAGTCCGGGACTGTGCGATCGCTCCCAATTGACCCGCTCCGCGGTTGCATTAGAATTGTTGTTGCCCCCGTTTGGTGCTAGTGTTATGGCATACCCCTCACGTAACACCGCGCACGTTGCATGTGTATTCTAAATGATGCGACAGATGCGATCCCGTCGTGTATCGTTTTTTGGGCATTTTCCCTCATCTCTGGTATTTTTCAGGTTAGCATTTTTCTA] [+] EMBL BM585475 [CCGCACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAACACGCAGAAATGAAACTAGAAACGAATTATAGACGAGCAGAATCGAACAACAAGCAGAAAGTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTAACATTATTATCCGGGGTTAGTGCGGCGTACCGTTGGGTGGCAAAAAAAAAACACGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGGCGGTGACACCGTACCATACACAGCAGCAATCCTGTCTTATGAGCGCATTACCCCAGGCATTAGTCCGGGACTGTGCGATCGCTCCCAATTGACCCGCTCCGCGGTTGCATTAGAATTGTTGTTGCCCCCGTTTGGTGCTAGTGTTATGGCATACCCCTCACGTAACACCGCGCACGTTGCATGTGTATTCTAAATGATGCGACAGATGCGATCCCGTCGTGTATCGTTTTTTGGGCATTTTCCCTCATCTCTGGTATTTTTCAGGTTAGCATTTTTCTA] consensusID : consensus_3974#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [GCAGAATCGCGCCGAGGNNTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACACCGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTCCCAGGCGGGACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTTGCGTTAGAATTGTTGTTGCCCCCGGTTTGGTGCTAGTGTATATGTGTGTTATGGCATACCCCTCACGTAACACCGCGCACGTTGCATGTTGCATTCTAAATGATGCGGCAGATGCGATCCCGTCGTGTATCGGTTTTTGGGCATTTTCCCTCATCTCTGGTATTATTCAAGGTTAGCATTTTTCTAGGTACAC] [+] EMBL AL697055 [GCAGAATCGCGCCGAGGNNTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGCAATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACACCGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTCCCAGGCGGGACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTTGCGTTAGAATTGTTGTTGCCCCCGGTTTGGTGCTAGTGTATATGTGTGTTATGGCATACCCCTCACGTAACACCGCGCACGTTGCATGTTGCATTCTAAATGATGCGGCAGATGCGATCCCGTCGTGTATCGGTTTTTGGGCATTTTCCCTCATCTCTGGTATTATTCAAGGTTAGCATTTTTCTAGGTACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3974#1 ------------------------------------------------------------ consensus_3974#2 ------------------------------------------------------------ consensus_3974#0 TTGCGACGGAACAATTCAAAACAGCAGCAGCAACAAAAGCAACAAAATAATAATGAAAGT 60 consensus_3974#1 ------------------------------------------------------------ consensus_3974#2 ------------------------------------------------------------ consensus_3974#0 ACAGTGCGCAGGAAAACTTTTTACTCTAGAAATAGTAGCAAAACATGTAAACTAATTATT 120 consensus_3974#1 ------------------------------------------------------------ consensus_3974#2 ------------------------------------------------------------ consensus_3974#0 AGCCGACGAAGCAGCAGCAGAAGCCGAACAGAACAAAACCCAACAAAGTGGGAAAAACAG 180 consensus_3974#1 --------CCGCACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAA 52 consensus_3974#2 ------------------------------------------------------------ consensus_3974#0 CAGCAACAAAGTACATAATTGCCGAAACAATTATGATACAGCAACAGAAACACACACAAA 240 consensus_3974#1 CACGCAGAAATGAAACTAGAAACGAATTATAGACGAGCAGAATCGAACAACAAGCAGAAA 112 consensus_3974#2 ------------------------------------------------------------ consensus_3974#0 TACACAGAAATGAAACTAGAAACGAATTATAGCCGAGCAGAATCGAACAACAAGCAGAAA 300 consensus_3974#1 GTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTA 172 consensus_3974#2 ------------------------------------------------------------ consensus_3974#0 GTGAGAGCAAACGCTCTGACCGAAGTGTAGACAACGCGGAATAGATAACCAAGTTAGGTA 360 consensus_3974#1 ACATTATTATCCGGGGTTAGT----GCGGCGTACCGTTGGGTGGCAAAAAAAAAACA--- 225 consensus_3974#2 ---------------------------------------------------GCAGAA--- 6 consensus_3974#0 ACATTATTATCCGGGGCTAGTAGTGGCGCCAGTGCGGCGTACCGTTGGGTGGCAAAAAAA 420 * * consensus_3974#1 ---CGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGC 282 consensus_3974#2 ---TCGCGCCGAGGNNTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGC 63 consensus_3974#0 ACACGGTGCGATTAGTTACACCTCCCTCTCTACCGCCCCTTGTTGCATCGCATTTTGTGC 480 * ** ******************************************** consensus_3974#1 AATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGGCGGTGACAC 342 consensus_3974#2 AATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACAC 123 consensus_3974#0 AATAGGGTTGAAGTTAGCGAACGCGTCATTACAGTGTGCATCGGATGACGTTGGTGACAC 540 ************************************************** ******** consensus_3974#1 CGTACCATACACAGCAGCAATCCTGTCTTATGAGCGCATTAC-CCCAGGCATTAGTCCGG 401 consensus_3974#2 CGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTT-CCCAGGC--------GG 174 consensus_3974#0 CGTACCATACACAGCAGCAATTCTGTCTTATGAGCGCATTTTTCCCAGGC--------GG 592 ********************* ****************** ******* ** consensus_3974#1 GACTGTGCGATCGCTCCCAATTGACCCGCTCCGCGGTT-GCATTAGAATTGTTGTTGCCC 460 consensus_3974#2 GACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTT-GCGTTAGAATTGTTGTTGCCC 233 consensus_3974#0 GACTGTGCGATCGCTCCCAATTGCCCCGCTCCGCAGTTTGC------------------- 633 *********************** ********** *** ** consensus_3974#1 CCG-TTTGGTGCTAGTGT----------TATGGCATACCCCTCACGTAACACCGCGCACG 509 consensus_3974#2 CCGGTTTGGTGCTAGTGTATATGTGTGTTATGGCATACCCCTCACGTAACACCGCGCACG 293 consensus_3974#0 ------------------------------------------------------------ consensus_3974#1 TTGCATGT-GTATTCTAAATGATGCGACAGATGCGATCCCGTCGTGTATCGTTTTTTGGG 568 consensus_3974#2 TTGCATGTTGCATTCTAAATGATGCGGCAGATGCGATCCCGTCGTGTATCGGTTTTTGGG 353 consensus_3974#0 ------------------------------------------------------------ consensus_3974#1 CATTTTCCCTCATCTCTGGTATTTTTCA-GGTTAGCATTTTTCTA------- 612 consensus_3974#2 CATTTTCCCTCATCTCTGGTATTATTCAAGGTTAGCATTTTTCTAGGTACAC 405 consensus_3974#0 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||