These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGTGTTCCCTTCGTCCTGTGGCGATAAGTTTACCTTCTCGAAGTGTTTCGCCGTGCTGTTGAGCATTTCCGGCGCGGTAATGGTTTCGATGTCGGAAATCGATCAGCCGAAAATGTCACGCGGCATCGTGCTCGCCCTGTTGAGTGCATTCTTCTACGCGTCCTATCTGGTGCTAGTCAAGCGTAAAAGCGACACGGAAGAAAAGATTAGCATTCCCCTGTTCTTTGGCTTTGTGGGGCTGTGGAATTTGCTGCTGCTGTGGCCGCTGCTTTTTGTGCTAAACTTTTCCCAGCTCGAAGTGTTCGAGCTACCCTCCCGGCGACAGTTTATTGTTCTGTTTCTGAACGGGCTCATCGGCACGGTACTGTCCGAGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCATCCCTTATCGGCACGGTCGCCATATCGCTACAGATACCGCTGGCGATGCTGTTCGACATGGTGCTGCACGGTAAAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCGCTGGTGCTGGTGGCCTTTTCTGGTGAAGTTTGATGACTGTGATCCCCTGCTAAAGTTCGGCAAGCTAATGTACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTGCGAATACCGGATCTGGAGGAGCAGCACGAGTCCC] [+] EMBL BM584249 [CCGTGTTCCCTTCGTCCTGTGGCGATAAGTTTACCTTCTCGAAGTGTTTCGCCGTGCTGTTGAGCATTTCCGGCGCGGTAATGGTTTCGATGTCGGAAATCGATCAGCCGAAAATGTCACGCGGCATCGTGCTCGCCCTGTTGAGTGCATTCTTCTACGCGTCCTATCTGGTGCTAGTCAAGCGTAAAAGCGACACGGAAGAAAAGATTAGCATTCCCCTGTTCTTTGGCTTTGTGGGGCTGTGGAATTTGCTGCTGCTGTGGCCGCTGCTTTTTGTGCTAAACTTTTCCCAGCTCGAAGTGTTCGAGCTACCCTCCCGGCGACAGTTTATTGTTCTGTTTCTGAACGGGCTCATCGGCACGGTACTGTCCGAGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCATCCCTTATCGGCACGGTCGCCATATCGCTACAGATACCGCTGGCGATGCTGTTCGACATGGTGCTGCACGGTAAAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCGCTGGTGCTGGTGGCCTTTTCTGGTGAAGTTTGATGACTGTGATCCCCTGCTAAAGTTCGGCAAGCTAATGTACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTGCGAATACCGGATCTGGAGGAGCAGCACGAGTCCC] consensusID : consensus_3976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCGCCCACGCGTCCGGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCGTCCCTTATCGGCACGGTCGCCATATCGCTACAGATACCGCTGGCGATGCTGTTCGACATGGTGCTGCACGGTAAAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCACTGGTGCTGGTGGCCTTTCTGGTGAAGTTTGATGACTGTGATCCGCTGCTAAAGTTCGGCAAGCTAATGTACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTACGAATACCGGATCTGGAGGAGCAGCACGAGTCCCTCATCGACGGTAGTCATGAAAACTAGAGCGGGAATGAACCGTACGTGGCGTCTGTTTTGCTCTCGGGTTAGTTACACACAAACACATCACAGTAGTTCTATCCGGTGCTCAGCGGTTTTGTATCGTTTCTCGGATCACTATCCTTTGGTCGGGGATCATCAGCACAGTGATGCGCCACAGAAGTCGTCATCAGCTTTTGGCCATTTTATTGGATTTTCATAACTTTAACTGGCAGAGTGCAATTCGCTAAGGAACAAGGCGTTCAACAGCGATCGTTTTTTTTTTTAGTCTAATTTTGACGATTCCTGATCAATTTCTCGTGATTTTGTTTAAGTAGAAATTTTT] [+] EMBL BM639584 [CCGCCCACGCGTCCGGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCGTCCCTTATCGGCACGGTCGCCATATCGCTACAGATACCGCTGGCGATGCTGTTCGACATGGTGCTGCACGGTAAAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCACTGGTGCTGGTGGCCTTTCTGGTGAAGTTTGATGACTGTGATCCGCTGCTAAAGTTCGGCAAGCTAATGTACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTACGAATACCGGATCTGGAGGAGCAGCACGAGTCCCTCATCGACGGTAGTCATGAAAACTAGAGCGGGAATGAACCGTACGTGGCGTCTGTTTTGCTCTCGGGTTAGTTACACACAAACACATCACAGTAGTTCTATCCGGTGCTCAGCGGTTTTGTATCGTTTCTCGGATCACTATCCTTTGGTCGGGGATCATCAGCACAGTGATGCGCCACAGAAGTCGTCATCAGCTTTTGGCCATTTTATTGGATTTTCATAACTTTAACTGGCAGAGTGCAATTCGCTAAGGAACAAGGCGTTCAACAGCGATCGTTTTTTTTTTTAGTCTAATTTTGACGATTCCTGATCAATTTCTCGTGATTTTGTTTAAGTAGAAATTTTT] consensusID : consensus_3976#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [CAGATCGCCCGAGGTTATAAATACAATAATTCGTCGAAGCTCGCACTATCGCCCGGTTTTTTAGGTGTTTTATCGTTCGCACAAGTGTCCCAGTGAATTGTTTTAGGATAAATTGTGCTCGAAGGGGGAATACAGGACCCGAATAACAAGCTAACAATACGCAGGGATTTAAATCACATACACACACACACTCATCAGCTTTTGGCCATTTTATTGGACTTTCATAACTTTAACTGGCAGAGTGCAATTCGCTAAGGAACAATGCGTTCAACAGCGATCGTTTTTTTAGTCTAATTTTGACGATTCCTGATCAATTTCTCGTGATTTTGTTTTAGTGGAAATTTTTGGAGATTAATTTACATCACCAAAGTGTTCTTGCTGATACGAGGTGTATTTTCGGACCGTGCTTTCATTCGTGATGCGGTTTTAGCGGGCAAGGTGC] [+] EMBL AL697060 [CAGATCGCCCGAGGTTATAAATACAATAATTCGTCGAAGCTCGCACTATCGCCCGGTTTTTTAGGTGTTTTATCGTTCGCACAAGTGTCCCAGTGAATTGTTTTAGGATAAATTGTGCTCGAAGGGGGAATACAGGACCCGAATAACAAGCTAACAATACGCAGGGATTTAAATCACATACACACACACACTCATCAGCTTTTGGCCATTTTATTGGACTTTCATAACTTTAACTGGCAGAGTGCAATTCGCTAAGGAACAATGCGTTCAACAGCGATCGTTTTTTTAGTCTAATTTTGACGATTCCTGATCAATTTCTCGTGATTTTGTTTTAGTGGAAATTTTTGGAGATTAATTTACATCACCAAAGTGTTCTTGCTGATACGAGGTGTATTTTCGGACCGTGCTTTCATTCGTGATGCGGTTTTAGCGGGCAAGGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3976#0 CCGTGTTCCCTTC---GTCCTGTGGCGATAAGTTTACCTTCTCGAAGTGTTTCGCCGTGC 57 consensus_3976#1 CCGCCCACGCGTCCGGGCACTGTGGCTATGGGGCTGCTTTCT---AACGTCGTCCCTTAT 57 consensus_3976#2 ------------------------------------------------------------ consensus_3976#0 TGTTGAGCATTTCCGGCGCGGTAATGGTTTCGATGTCGGAAATCGATCAGCCGAAAATGT 117 consensus_3976#1 CGGCACG-GTCGCCATATCGCTACAGATACCGCTGGCG-ATGCTGTTCGAC--ATGGTGC 113 consensus_3976#2 ------------------------------------------------------------ consensus_3976#0 CACGCGGCATCGTGCTCGCCCTGTTGAGTGCATTCTTCTACGCGTCCTATCTGGTGCTAG 177 consensus_3976#1 TGCACGGTAAAACCTACCCGCTACTGT-TCTATCTCGGCTCACTGCCCATGTTCCTTTCA 172 consensus_3976#2 ------------------------------------------------------------ consensus_3976#0 TCAAGCGTAAAAGCGACACGGAAGAAAAG-ATTAGCATTCCCCTGTTCTTTGGCTTTGTG 236 consensus_3976#1 CTGGTGCTGGTGGCCTTTCTGGTGAAGTTTGATGACTGTGATCCGCTGCTAAAGTTCGGC 232 consensus_3976#2 ---------------------------------CAGATCGCCCGAGGTTATAAATACAAT 27 * * consensus_3976#0 GGGCTGTGGAATTTGCTGCTGCTGTGGCCGCTGCTTTTTG--TGCTAAACTTTTCCCAGC 294 consensus_3976#1 AAGCTAATGTACCGGCGGCTG-TGGAACTGCCGGAAAGCGAACGTTGTACGAATACCGGA 291 consensus_3976#2 AATTCGTCGAA---GCTCGCACTATCGCC-CGGTTTTTTAGGTGTTTTATCGTTCGCAC- 82 * * ** * * * * * * * * * consensus_3976#0 TC-GAAGTGTTCGAGCTACCCTCCCGGCGACAGTTTATTGTTCTGTTTCTGAACGGGCTC 353 consensus_3976#1 TCTGGAGGAGCAGCACGAGTCCCTCATCGACGGTA-GTCATGAAAACTAGAGCGGGAATG 350 consensus_3976#2 ----AAGTGTCCCAGTGAATTGTTTTAGGATAAATTGT-GCTCGAAGGGGGAATACAG-G 136 ** * ** * consensus_3976#0 ATCGGCACGGTACTGTCCGAGGCACTGTGGCTATGGGGCTGCTTTCTAACGTCATCCCTT 413 consensus_3976#1 AACCGTACG-TGGCGTCTG------TTTTGCTCTCGGGTTAGTTAC--ACACAAACACAT 401 consensus_3976#2 ACCCGAATAACAA-GCTAACAATACGCAGGGATTTAAATCACATACACACACACACTCAT 195 * * * * * * * * * ** * * * consensus_3976#0 ATCGGCACGGTCGCCATATC-GCTACAGATACCGCTGGC-GATGCTGTTCGACATGGTGC 471 consensus_3976#1 -----CACAGTAGTTCTATCCGGTGCTCAGCGGTTTTGT-ATCGTTTCTCGGATCACTAT 455 consensus_3976#2 CAGCTTTTGGCCATTTTATTGGACTTTCATAACTTTAACTGGCAGAGTGCAATTCGCTAA 255 * *** * * * * * consensus_3976#0 TGCACGGTAAAACCTACCCGCTACTGTTCTATCTCGGCTCACTGCCCATGTTCCTTTCGC 531 consensus_3976#1 CCTTTGGTCGGGGATCATCAGCACAGTGATGCGCCACAGAAGTCGTCATCAGCTTTTGGC 515 consensus_3976#2 GGAACAAT-GCGTTCAACAGCGATCGTTTT--TTTAGTCTAATTTTGACGATTCCTGATC 312 * * ** * * * * * * consensus_3976#0 TGGTGCTGGTGGCCTT-TTCTGG-TGAAGTTTGATGACTGTGATCCCC--TGCTAAAGTT 587 consensus_3976#1 CATT-TTATTGGATTT-TCATAACTTTAACTGGCAGAGTGCAATTC-----GCTAAGGAA 568 consensus_3976#2 AATTTCTCGTGATTTTGTTTTAGTGGAAATTTTTGGAGATTAATTTACATCACCAAAGTG 372 * * ** ** * * * * ** ** * ** * consensus_3976#0 CGGCAAGCTAATGTACCGGCGGCTGTGGAACTGCCGGAAAGCGAACGTTGTGCGAATACC 647 consensus_3976#1 CAAGGCGTTCAACAGCGATCGTTTTTTTTTTTAGTCTAATTTTGACGATTCCTGATCAAT 628 consensus_3976#2 TT-CTTGCTGATACGAGGTGTATTTTCGGACCGTGCTTTCATTCGTGATGCGGTTTTAGC 431 * * * * * * * * consensus_3976#0 GGATCTGGA----GGAGCAGCACGAGTCCC- 673 consensus_3976#1 TTCTCGTGATTTTGTTTAAGTAGAAATTTTT 659 consensus_3976#2 GGGCAAGGTGC-------------------- 442 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||