Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3977 cluster # 3977       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3977#0 length = 767 sequences # 2  
consensus_3977#1 length = 259 sequences # 1  

consensusID : consensus_3977#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 767
fasta sequence
                              [CCGCGCCAAGTGCAAGGATCAGCAGCAGCAGCAGCAGCAGCACCATCGCACGAAGCTCATCACCTCGAAAAGCGTCAACGATGTGTCGATGCTGAAGCAGCAGCAACAGCACCACCACCACCATCACCATTACAACCAGGCGGCCCTTGCGCACCACCACCATCATCACCTGCACCACCAGCACAGCCAGCAGCCGAGCTATCGGATCACGAGCACCGGGCTGGGTGCGGCGACCGGCGAACTGGCCGACCCGCCGACGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCTGGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAAGCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAACGGGCGCAAAAAAACCGACGGCGGCGGACGGCGCTGGCACTGGCAGCAAGGAGGCGTCCCCGACCAAGGACCGGCCCCCGAGCAATCTGCTCGCGGTCAACGGCCAGCCGGAACCGGTGAACGGGGGCGGCAGCACCAGCCCCTCGTCCGGCGGGGGCTTTTTGCGGTTCAAAATTTCCCCCAAGCTGAAGGACAAATCCAAGACGAAGGAAAGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACCACGCCCGATGCTGCCGGCCCGAACCATCATCACCACAACAGCTACACGCCG]

[+] EMBL BM653009             [CCGCGCCAAGTGCAAGGATCAGCAGCAGCAGCAGCAGCAGCACCATCGCACGAAGCTCATCACCTCGAAAAGCGTCAACGATGTGTCGATGCTGAAGCAGCAGCAACAGCACCACCACCACCATCACCATTACAACCAGGCGGCCCTTGCGCACCACCACCATCATCACCTGCACCACCAGCACAGCCAGCAGCCGAGCTATCGGATCACGAGCACCGGGCTGGGTGCGGCGACCGGCGAACTGGCCGACCCGCCGACGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCTGGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAAGCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAACGGGCGCAAAAAAACCGACGGCGGCGGACGGCGCTGGCACTGGCAGCAA                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM633527             [                                                                                                                                                                                                                                        ccgGGCGAACTGGCCGACCCGCCGCCGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCTGGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAAGCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAACGGGCGC AAAAAACCGACGGCGCCGGACGGCGCTGG   TGGCAGCAAGGAGGCGTCCCCGACCAAGGACCGGCCCCCGAGCAATCTGCTCGCGGTCAACGGCCAGCCGGAACCGGTGAACGGGGGCGGCAGCACCAGCCCCTCGTCCGGCGGGGGCTTTTTGCGGTTCAAAATTTCCCCCAAGCTGAAGGACAAATCCAAGACGAAGGAAAGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACCACGCCCGATGCTGCCGGCCCGAACCATCATCACCACAACAGCTACACGCCG]


>consensus_3977#0 CCGCGCCAAGTGCAAGGATCAGCAGCAGCAGCAGCAGCAGCACCATCGCACGAAGCTCAT CACCTCGAAAAGCGTCAACGATGTGTCGATGCTGAAGCAGCAGCAACAGCACCACCACCA CCATCACCATTACAACCAGGCGGCCCTTGCGCACCACCACCATCATCACCTGCACCACCA GCACAGCCAGCAGCCGAGCTATCGGATCACGAGCACCGGGCTGGGTGCGGCGACCGGCGA ACTGGCCGACCCGCCGACGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCT GGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAA GCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAA CGGGCGCAAAAAAACCGACGGCGGCGGACGGCGCTGGCACTGGCAGCAAGGAGGCGTCCC CGACCAAGGACCGGCCCCCGAGCAATCTGCTCGCGGTCAACGGCCAGCCGGAACCGGTGA ACGGGGGCGGCAGCACCAGCCCCTCGTCCGGCGGGGGCTTTTTGCGGTTCAAAATTTCCC CCAAGCTGAAGGACAAATCCAAGACGAAGGAAAGCTCTCCCTACGGTGCCCGGTGTGCCT CCGACGACTGCCTTAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACCACGC CCGATGCTGCCGGCCCGAACCATCATCACCACAACAGCTACACGCCG



consensusID : consensus_3977#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence
                              [AAGATCGCCNGAGGTCAAGTCATGCTTTGATATGAGAAGCATTAGTTGTGGTACGAAGGAAAGGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAAAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACAACGCCCGATGCTGCCGGCCCGAACATCATCACCACAACAGTACACGCCGATCGGGCGCAAGGAGGCGGAAGAGCTGGAACCACCGCCATCCCTCCGCTTGCCCCTCAACTA]

[+] EMBL AL697063             [AAGATCGCCNGAGGTCAAGTCATGCTTTGATATGAGAAGCATTAGTTGTGGTACGAAGGAAAGGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAAAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACAACGCCCGATGCTGCCGGCCCGAACATCATCACCACAACAGTACACGCCGATCGGGCGCAAGGAGGCGGAAGAGCTGGAACCACCGCCATCCCTCCGCTTGCCCCTCAACTA]


>consensus_3977#1 AAGATCGCCNGAGGTCAAGTCATGCTTTGATATGAGAAGCATTAGTTGTGGTACGAAGGA AAGGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAAAACACGAACGGAGC GGCGGCGACGGGTTCGCCCACCACCACAACGCCCGATGCTGCCGGCCCGAACATCATCAC CACAACAGTACACGCCGATCGGGCGCAAGGAGGCGGAAGAGCTGGAACCACCGCCATCCC TCCGCTTGCCCCTCAACTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3977#0      CCGCGCCAAGTGCAAGGATCAGCAGCAGCAGCAGCAGCAGCACCATCGCACGAAGCTCAT 60
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      CACCTCGAAAAGCGTCAACGATGTGTCGATGCTGAAGCAGCAGCAACAGCACCACCACCA 120
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      CCATCACCATTACAACCAGGCGGCCCTTGCGCACCACCACCATCATCACCTGCACCACCA 180
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      GCACAGCCAGCAGCCGAGCTATCGGATCACGAGCACCGGGCTGGGTGCGGCGACCGGCGA 240
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      ACTGGCCGACCCGCCGACGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCT 300
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      GGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAA 360
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      GCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAA 420
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      CGGGCGCAAAAAAACCGACGGCGGCGGACGGCGCTGGCACTGGCAGCAAGGAGGCGTCCC 480
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      CGACCAAGGACCGGCCCCCGAGCAATCTGCTCGCGGTCAACGGCCAGCCGGAACCGGTGA 540
consensus_3977#1      ------------------------------------------------------------
                                                                                  

consensus_3977#0      ACGGGGGCGGCAGCACCAGCCCCTCGTCCGGCGGGGGCTTTTTGCGGTTCAAAATTTCCC 600
consensus_3977#1      ----------------------------------AAGATCGCCNGAGGTCAAGTCATGCT 26
                                                          * *       * ****    * * 

consensus_3977#0      CCAAGCTGAAGGACA---AATCCAAGACGAAGGAAAG-CTCTCCCTACGGTGCCCGGTGT 656
consensus_3977#1      TTGATATGAGAAGCATTAGTTGTGGTACGAAGGAAAGGCTCTCCCTACGGTGCCCGGTGT 86
                         *  ***    **     *     *********** **********************

consensus_3977#0      GCCTCCGACGACTGCCTTAA--CACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCA 714
consensus_3977#1      GCCTCCGACGACTGCCTTAAAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCA 146
                      ********************  **************************************

consensus_3977#0      CCACGCCCGATGCTGCCGGCCCGAACCATCATCACCACAACAGCTACACGCCG------- 767
consensus_3977#1      CAACGCCCGATGCTGCCGGCCCGAAC-ATCATCACCACAACAG-TACACGCCGATCGGGC 204
                      * ************************ **************** *********       

consensus_3977#0      -------------------------------------------------------
consensus_3977#1      GCAAGGAGGCGGAAGAGCTGGAACCACCGCCATCCCTCCGCTTGCCCCTCAACTA 259
                                                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)