These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 767 fasta sequence [CCGCGCCAAGTGCAAGGATCAGCAGCAGCAGCAGCAGCAGCACCATCGCACGAAGCTCATCACCTCGAAAAGCGTCAACGATGTGTCGATGCTGAAGCAGCAGCAACAGCACCACCACCACCATCACCATTACAACCAGGCGGCCCTTGCGCACCACCACCATCATCACCTGCACCACCAGCACAGCCAGCAGCCGAGCTATCGGATCACGAGCACCGGGCTGGGTGCGGCGACCGGCGAACTGGCCGACCCGCCGACGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCTGGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAAGCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAACGGGCGCAAAAAAACCGACGGCGGCGGACGGCGCTGGCACTGGCAGCAAGGAGGCGTCCCCGACCAAGGACCGGCCCCCGAGCAATCTGCTCGCGGTCAACGGCCAGCCGGAACCGGTGAACGGGGGCGGCAGCACCAGCCCCTCGTCCGGCGGGGGCTTTTTGCGGTTCAAAATTTCCCCCAAGCTGAAGGACAAATCCAAGACGAAGGAAAGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACCACGCCCGATGCTGCCGGCCCGAACCATCATCACCACAACAGCTACACGCCG] [+] EMBL BM653009 [CCGCGCCAAGTGCAAGGATCAGCAGCAGCAGCAGCAGCAGCACCATCGCACGAAGCTCATCACCTCGAAAAGCGTCAACGATGTGTCGATGCTGAAGCAGCAGCAACAGCACCACCACCACCATCACCATTACAACCAGGCGGCCCTTGCGCACCACCACCATCATCACCTGCACCACCAGCACAGCCAGCAGCCGAGCTATCGGATCACGAGCACCGGGCTGGGTGCGGCGACCGGCGAACTGGCCGACCCGCCGACGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCTGGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAAGCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAACGGGCGCAAAAAAACCGACGGCGGCGGACGGCGCTGGCACTGGCAGCAA ] [+] EMBL BM633527 [ ccgGGCGAACTGGCCGACCCGCCGCCGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCTGGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAAGCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAACGGGCGC AAAAAACCGACGGCGCCGGACGGCGCTGG TGGCAGCAAGGAGGCGTCCCCGACCAAGGACCGGCCCCCGAGCAATCTGCTCGCGGTCAACGGCCAGCCGGAACCGGTGAACGGGGGCGGCAGCACCAGCCCCTCGTCCGGCGGGGGCTTTTTGCGGTTCAAAATTTCCCCCAAGCTGAAGGACAAATCCAAGACGAAGGAAAGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACCACGCCCGATGCTGCCGGCCCGAACCATCATCACCACAACAGCTACACGCCG] consensusID : consensus_3977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [AAGATCGCCNGAGGTCAAGTCATGCTTTGATATGAGAAGCATTAGTTGTGGTACGAAGGAAAGGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAAAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACAACGCCCGATGCTGCCGGCCCGAACATCATCACCACAACAGTACACGCCGATCGGGCGCAAGGAGGCGGAAGAGCTGGAACCACCGCCATCCCTCCGCTTGCCCCTCAACTA] [+] EMBL AL697063 [AAGATCGCCNGAGGTCAAGTCATGCTTTGATATGAGAAGCATTAGTTGTGGTACGAAGGAAAGGCTCTCCCTACGGTGCCCGGTGTGCCTCCGACGACTGCCTTAAAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCACAACGCCCGATGCTGCCGGCCCGAACATCATCACCACAACAGTACACGCCGATCGGGCGCAAGGAGGCGGAAGAGCTGGAACCACCGCCATCCCTCCGCTTGCCCCTCAACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3977#0 CCGCGCCAAGTGCAAGGATCAGCAGCAGCAGCAGCAGCAGCACCATCGCACGAAGCTCAT 60 consensus_3977#1 ------------------------------------------------------------ consensus_3977#0 CACCTCGAAAAGCGTCAACGATGTGTCGATGCTGAAGCAGCAGCAACAGCACCACCACCA 120 consensus_3977#1 ------------------------------------------------------------ consensus_3977#0 CCATCACCATTACAACCAGGCGGCCCTTGCGCACCACCACCATCATCACCTGCACCACCA 180 consensus_3977#1 ------------------------------------------------------------ consensus_3977#0 GCACAGCCAGCAGCCGAGCTATCGGATCACGAGCACCGGGCTGGGTGCGGCGACCGGCGA 240 consensus_3977#1 ------------------------------------------------------------ consensus_3977#0 ACTGGCCGACCCGCCGACGCTGCCCCACAAGCTCACCGACTACATCTCCGACCCGAACCT 300 consensus_3977#1 ------------------------------------------------------------ consensus_3977#0 GGTGCACAGCGGGGCGACCGAGCCGGACAGCGAGGTGCGGGTGCGGGGCGCCGCCACCAA 360 consensus_3977#1 ------------------------------------------------------------ consensus_3977#0 GCGCGGCAAGGACCGGGAGCGCCGCAAAAGCATCATCGAGAAGGTGTCGGAGTTTTTCAA 420 consensus_3977#1 ------------------------------------------------------------ consensus_3977#0 CGGGCGCAAAAAAACCGACGGCGGCGGACGGCGCTGGCACTGGCAGCAAGGAGGCGTCCC 480 consensus_3977#1 ------------------------------------------------------------ consensus_3977#0 CGACCAAGGACCGGCCCCCGAGCAATCTGCTCGCGGTCAACGGCCAGCCGGAACCGGTGA 540 consensus_3977#1 ------------------------------------------------------------ consensus_3977#0 ACGGGGGCGGCAGCACCAGCCCCTCGTCCGGCGGGGGCTTTTTGCGGTTCAAAATTTCCC 600 consensus_3977#1 ----------------------------------AAGATCGCCNGAGGTCAAGTCATGCT 26 * * * **** * * consensus_3977#0 CCAAGCTGAAGGACA---AATCCAAGACGAAGGAAAG-CTCTCCCTACGGTGCCCGGTGT 656 consensus_3977#1 TTGATATGAGAAGCATTAGTTGTGGTACGAAGGAAAGGCTCTCCCTACGGTGCCCGGTGT 86 * *** ** * *********** ********************** consensus_3977#0 GCCTCCGACGACTGCCTTAA--CACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCA 714 consensus_3977#1 GCCTCCGACGACTGCCTTAAAACACGAACGGAGCGGCGGCGACGGGTTCGCCCACCACCA 146 ******************** ************************************** consensus_3977#0 CCACGCCCGATGCTGCCGGCCCGAACCATCATCACCACAACAGCTACACGCCG------- 767 consensus_3977#1 CAACGCCCGATGCTGCCGGCCCGAAC-ATCATCACCACAACAG-TACACGCCGATCGGGC 204 * ************************ **************** ********* consensus_3977#0 ------------------------------------------------------- consensus_3977#1 GCAAGGAGGCGGAAGAGCTGGAACCACCGCCATCCCTCCGCTTGCCCCTCAACTA 259 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||