These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3978#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [GCCAAGAATCGGCACGAGGCGCACGGCACACTTGTAGTTCCTAATCATGACGCGCCGTTCTCTGCTCTGGTTTGCCCTATCGTTGGCAGTGCTTGCCATCAACGTGAGTGAACAGTAATGGTGTCGAGGCTGCCAGATTAGTGCATCTTGTTTGATCTCTCTCTCTATCGTGATCTTTCCTTTTCAAATTCACTTCCAGCTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCAACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGGTGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGAGTTCCTCGGAAACGATCACCCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTGCTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCGAGTCGAGCTCGTCGGCATCGATCACGGTGTCCGCCAGCTTCTCGTCCCGTTGGGACGTGTATGAACACCAAAATGCAGCGTCCGTCAGTGCGACGTTCAGCGCATTCAGGCACCGGGCACAGGTCNACAGGTACGTTTTAGCATTCCATTCACCAGGCTCGTCCGTCCCCCGGTCTCCCTGTTCAACCATTGCCGGTTTCAGAGGGGTTCTCGAAACAACGGGCCCCAAGGACCTCGGGTCAACNCCAGGGCGGGGAGAATCAGNTTCCAAGGAACTGGGTTGAANAGAGCGAAAAAACAAGAGCA] [+] EMBL BX469863 [GCCAAGAATCGGCACGAGGCGCACGGCACACTTGTAGTTCCTAATCATGACGCGCCGTTCTCTGCTCTGGTTTGCCCTATCGTTGGCAGTGCTTGCCATCAACGTGAGTGAACAGTAATGGTGTCGAGGCTGCCAGATTAGTGCATCTTGTTTGATCTCTCTCTCTATCGTGATCTTTCCTTTTCAAATTCACTTCCAGCTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCAACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGGTGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGAGTTCCTCGGAAACGATCACCCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTGCTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCGAGTCGAGCTCGTCGGCATCGATCACGGTGTCCGCCAGCTTCTCGTCCCGTTGGGACGTGTATGAACACCAAAATGCAGCGTCCGTCAGTGCGACGTTCAGCGCATTCAGGCACCGGGCACAGGTCNACAGGTACGTTTTAGCATTCCATTCACCAGGCTCGTCCGTCCCCCGGTCTCCCTGTTCAACCATTGCCGGTTTCAGAGGGGTTCTCGAAACAACGGGCCCCAAGGACCTCGGGTCAACNCCAGGGCGGGGAGAATCAGNTTCCAAGGAACTGGGTTGAANAGAGCGAAAAAACAAGAGCA] consensusID : consensus_3978#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GCAAGAATCGCCGACGGGNTTTTATAATCATTTCGACCGAAGAGGATACTATTACGCACGGGACACTGGGTAGTTCCTAATCATGACGCGCCGNTCTCTGCTCTGGTTTGCCCTATCGTTGGCAGTGCTTGCCATCAAACTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCAACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGGTGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGAGTTCCTCGGAAACGATCACCCCAGTTCTGACGAGCGAAAGCATCAGCCAGAATGCACTGCTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCAGTCGAGCTCGTCGGCATCGATCACGGTGTCCGCCAGCTTCTCGTCCGTTGGGACGTGTATGAACACCAAAATGCAAGCGTCCGTCAGTGCGACGTTCAGCGCA] [+] EMBL AL929726 [GCAAGAATCGCCGACGGGNTTTTATAATCATTTCGACCGAAGAGGATACTATTACGCACGGGACACTGGGTAGTTCCTAATCATGACGCGCCGNTCTCTGCTCTGGTTTGCCCTATCGTTGGCAGTGCTTGCCATCAAACTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCAACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGGTGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGAGTTCCTCGGAAACGATCACCCCAGTTCTGACGAGCGAAAGCATCAGCCAGAATGCACTGCTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCAGTCGAGCTCGTCGGCATCGATCACGGTGTCCGCCAGCTTCTCGTCCGTTGGGACGTGTATGAACACCAAAATGCAAGCGTCCGTCAGTGCGACGTTCAGCGCA] consensusID : consensus_3978#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [GGNCAGATTCGCGCNGAGGTAATACTGTCAGCCTGCGCAACGATATGTCGTTCATCTGATAGAGTCCTCGGAAACGATCACCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTGTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGGNGTCGAGCTCGCTCGGGATCTGATCACAGGGTGTCCGGCAGACTTCTCGTCCGTTGGGACGTGTATGAACACCAAAATGCAAGCGTCCGTCAGTGCGACGTTCAGCGCATTCAGCACGGCACAGTCACAGTACTTTAGCATCATCACCAGCTCGTCCTCCCCGTTCCTGTCCACCTGCCGTTCGCGGTTCTCGAACACGGCCAGGACTCGGTCAACCAGGCGGGGCGATCG] [+] EMBL AL697077 [GGNCAGATTCGCGCNGAGGTAATACTGTCAGCCTGCGCAACGATATGTCGTTCATCTGATAGAGTCCTCGGAAACGATCACCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTGTCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGGNGTCGAGCTCGCTCGGGATCTGATCACAGGGTGTCCGGCAGACTTCTCGTCCGTTGGGACGTGTATGAACACCAAAATGCAAGCGTCCGTCAGTGCGACGTTCAGCGCATTCAGCACGGCACAGTCACAGTACTTTAGCATCATCACCAGCTCGTCCTCCCCGTTCCTGTCCACCTGCCGTTCGCGGTTCTCGAACACGGCCAGGACTCGGTCAACCAGGCGGGGCGATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3978#0 GCCAAGAATCGGCACGAGGCGCACGGCACACTTGTAGTTCCTAATCATGACGCGCCGTTC 60 consensus_3978#1 --------------------------------------------GCAAGAATCGCCGA-- 14 consensus_3978#2 ------------------------------------------------------------ consensus_3978#0 TCTGCTCTGGTTTGCCCTATCGTTGGCAGTGCTTGCCATCAACGTGAGTGAACAGTAATG 120 consensus_3978#1 -CGGGNTTTTATAATCATTTCGACCGAAGAGGATACTATTA-CGCACGGGACACTGGGTA 72 consensus_3978#2 ------------------------------------------------------------ consensus_3978#0 GTGTCGAGGC-TGCCAGATTAGTGCATCTTGTTTGATCTCTCTCTCTATCGTGATCTTTC 179 consensus_3978#1 GTTCCTAATCATGACGCGCCGNTC--TCTGCTCTGGT---TTGCCCTATCGTTGGCAGTG 127 consensus_3978#2 ------------------------------------------------------------ consensus_3978#0 CTTTTCAAATTCACTTCCAGCTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCA 239 consensus_3978#1 CTTGCCA--------TCAAACTGCACCATGCATCCGCCCAGCTGGACAACGCGATCGTCA 179 consensus_3978#2 ------------------------------------------------------------ consensus_3978#0 ACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGG 299 consensus_3978#1 ACAAGCGCAGCTCGATTAACTCCACGCTCGTCTCCTTCTCCAACAACATCGTGAACAAGG 239 consensus_3978#2 ---------------------------------------------------------GGN 3 * consensus_3978#0 TGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGA 359 consensus_3978#1 TGAACGATTACTCGAACAAGTTCGTCAGCCTGCGCAACGATATGTCGTTCCATCTGAAGA 299 consensus_3978#2 CAGATTCGCGCNGAGGTAATACTGTCAGCCTGCGCAACGATATGTCGTTC-ATCTGATAG 62 * * ** *************************** ****** consensus_3978#0 GTTCCTCGGAAACGATCACCCAGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTGC 419 consensus_3978#1 GTTCCTCGGAAACGATCACCCCAGTTCTGACGAGCGAAAGCATCAGCCAGAATGCACTGC 359 consensus_3978#2 AGTCCTCGGAAACGATCACC-AGTTCCTGACGAGCGAAAGCATCAGCCAGAATGCACTG- 120 ****************** * ********************************* consensus_3978#0 TCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGCGAGTCGAGCTCG-TCGGCATC 478 consensus_3978#1 TCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGC-AGTCGAGCTCG-TCGGCATC 417 consensus_3978#2 TCGCGCTGGACGTGCTGCAGAAGTCGAGTTCCACACTGG-NGTCGAGCTCGCTCGGGATC 179 ************************************** ********** **** *** consensus_3978#0 -GATCAC--GGTGTCCGCCAG-CTTCTCGTCCCGTTGGGACGTGTATGAACACCAAAATG 534 consensus_3978#1 -GATCAC--GGTGTCCGCCAG-CTTCTCGTCC-GTTGGGACGTGTATGAACACCAAAATG 472 consensus_3978#2 TGATCACAGGGTGTCCGGCAGACTTCTCGTCC-GTTGGGACGTGTATGAACACCAAAATG 238 ****** ******** *** ********** *************************** consensus_3978#0 CA-GCGTCCGTCAGTGCGACGTTCAGCGCATTCAGGCACCGGGCACAGGTCNACAGGTAC 593 consensus_3978#1 CAAGCGTCCGTCAGTGCGACGTTCAGCGCA------------------------------ 502 consensus_3978#2 CAAGCGTCCGTCAGTGCGACGTTCAGCGCATTCAGCACGGCACAGTCACAGTACTTTAGC 298 ** *************************** consensus_3978#0 GTTTTAGCATTCCATTCACCAGGCTCGTCCGTCCCCCGGTCTCCCTGTTCAACCATTGCC 653 consensus_3978#1 ------------------------------------------------------------ consensus_3978#2 ATCATCACCAGCTCGTCCTCCCCGTTCCTGTCCACCTGCCGTTCGCGGTTCTCGAACACG 358 consensus_3978#0 GGTTTCAGAGGGGTTCTCGAAACAACGGGCCCCAAGGACCTCGGGTCAACNCCAGGGCGG 713 consensus_3978#1 ------------------------------------------------------------ consensus_3978#2 GCCAGGACTCGGTCAACCAGGCGGGGCGATCG---------------------------- 390 consensus_3978#0 GGAGAATCAGNTTCCAAGGAACTGGGTTGAANAGAGCGAAAAAACAAGAGCA 765 consensus_3978#1 ---------------------------------------------------- consensus_3978#2 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||