These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_399#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGCAGTACCTTACTACTACTTTTAATATTGCTCTTGCAAAATCTGTCTACCGCACACCAGAGCCGGTACGAACGGATATCGATACGAAAGAGAGAGGTCACGAGTTGACAGTTTATAAAACTGAAGCTCAACTAACAGAACAACGTATGGCGTAAGGCTAAACTTATCCACCGAAAAAAGCAGCATAAAAAGCCATAGTGTTAAGAGATCAAGAGAGAGAGAGAGAAAGAGAGAGTAGGAGACAAATCGGGGGCAAAAGTTTTGATAAGTAGAAAAGTCATCATCATCATCGTCGGGAATCCTTCCTTTTTTGCCACATTTCGCAATGGATCTGAAACATTCCAACGTGCCGGAAGTGACGGTCGTCGCTGACGCGTACATGCCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGGCAACCAATGGATCGAATGCGACACTCGACAAACCGGCCCTACCAGCGGGTGAGTTCCGGATGTATAGCCGGCGCTGGCTAGTACTGGCCATCTTCGTGATGTATTCCGCCTCGAATGCGCTGCAGTGGATCCAGTACAGTATCATCGCAAATATCGTGCAGCGATACTACAACATCACCAGCACCTGGGTCGACTGGACGTCGATGATATTCATGATCCTGTACATTCCGCTCATCTTTCCGGCCAGC] [+] EMBL BM652837 [CCGCAGTACCTTACTACTACTTTTAATATTGCTCTTGCAAAATCTGTCTACCGCACACCAGAGCCGGTACGAACGGATATCGATACGAAAGAGAGAGGTCACGAGTTGACAGTTTATAAAACTGAAGCTCAACTAACAGAACAACGTATGGCGTAAGGCTAAACTTATCCACCGAAAAAAGCAGCATAAAAAGCCATAGTGTTAAGAGATCAAGAGAGAGAGAGAGAAAGAGAGAGTAGGAGACAAATCGGGGGCAAAAGTTTTGATAAGTAGAAAAGTCATCATCATCATCGTCGGGAATCCTTCCTTTTTTGCCACATTTCGCAATGGATCTGAAACATTCCAACGTGCCGGAAGTGACGGTCGTCGCTGACGCGTACATGCCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGGCAACCAATGGATCGAATGCGACACTCGACAAACCGGCCCTACCAGCGGGTGAGTTCCGGATGTATAGCCGGCGCTGGCTAGTACTGGCCATCTTCGTGATGTATTCCGCCTCGAATGCGCTGCAGTGGATCCAGTACAGTATCATCGCAAATATCGTGCAGCGATACTACAACATCACCAGCACCTGGGTCGACTGGACGTCGATGATATTCATGATCCTGTACATTCCGCTCATCTTTCCGGCCAGC] consensusID : consensus_399#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [TGAGGTTCTGACGCGTACATTCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGGCAACTAATTGATCTGAATGTGACACTCGACAAAACGGGCCTACAGCTGGGTGAGTTCCGGATGTACAGCGGTGCTGGCTGGTGCGTGGGCATCTCTCGTGATGTATTCCGNGCTCAATGNGCTGGAGTGGATCCAGTACAGATCATCTGCAATATACTGGAGGGNATGAAAGCAAAGAATACTACGGTCCCGTCTAAAAGCGTTGGAGGCTCTTNAAAAAAGGAGTAATATATTCCCTGTGGNTTCCAAAAACNATCCGTGTAAGGCTCTGGTTTCTGGCGTG] [+] EMBL AL931884 [TGAGGTTCTGACGCGTACATTCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGGCAACTAATTGATCTGAATGTGACACTCGACAAAACGGGCCTACAGCTGGGTGAGTTCCGGATGTACAGCGGTGCTGGCTGGTGCGTGGGCATCTCTCGTGATGTATTCCGNGCTCAATGNGCTGGAGTGGATCCAGTACAGATCATCTGCAATATACTGGAGGGNATGAAAGCAAAGAATACTACGGTCCCGTCTAAAAGCGTTGGAGGCTCTTNAAAAAAGGAGTAATATATTCCCTGTGGNTTCCAAAAACNATCCGTGTAAGGCTCTGGTTTCTGGCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_399#0 CCGCAGTACCTTACTACTACTTTTAATATTGCTCTTGCAAAATCTGTCTACCGCACACCA 60 consensus_399#1 ------------------------------------------------------------ consensus_399#0 GAGCCGGTACGAACGGATATCGATACGAAAGAGAGAGGTCACGAGTTGACAGTTTATAAA 120 consensus_399#1 ------------------------------------------------------------ consensus_399#0 ACTGAAGCTCAACTAACAGAACAACGTATGGCGTAAGGCTAAACTTATCCACCGAAAAAA 180 consensus_399#1 ------------------------------------------------------------ consensus_399#0 GCAGCATAAAAAGCCATAGTGTTAAGAGATCAAGAGAGAGAGAGAGAAAGAGAGAGTAGG 240 consensus_399#1 ------------------------------------------------------------ consensus_399#0 AGACAAATCGGGGGCAAAAGTTTTGATAAGTAGAAAAGTCATCATCATCATCGTCGGGAA 300 consensus_399#1 ------------------------------------------------------------ consensus_399#0 TCCTTCCTTTTTTGCCACATTTCGCAATGGATCTGAAACATTCCAACGTGCCGGAAGTGA 360 consensus_399#1 ---------------------------------------------------------TGA 3 *** consensus_399#0 CGGTCGTCGCTGACGCGTACATGCCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGG 420 consensus_399#1 GGTT-----CTGACGCGTACAT-TCGGGCAGCAAGTCGTCGGATCTGATCAAACCGCCGG 57 * * ************* ************************************ consensus_399#0 CAACCAATGGATC-GAATGCGACACTCGACAAACCGGCCCTACCAGCGGGTGAGTTCCGG 479 consensus_399#1 CAACTAATTGATCTGAATGTGACACTCGACAAAACGGGCCTACAGCTGGGTGAGTTCCGG 117 **** *** **** ***** ************* *** ***** ************* consensus_399#0 ATGTATAGCCGGCGCTGGCTAGTAC-TGGCCATCT-TCGTGATGTATTCCGCCTCGAATG 537 consensus_399#1 ATGTACAGC-GGTGCTGGCTGGTGCGTGGGCATCTCTCGTGATGTATTCCGNGCTCAATG 176 ***** *** ** ******* ** * *** ***** *************** **** consensus_399#0 CGCTGCAGTGGATCCAGTACAGTATCATCGCAAATATCGTGCAGCGA------------- 584 consensus_399#1 NGCTGGAGTGGATCCAGTACAG-ATCATCTGCAATATACTGGAGGGNATGAAAGCAAAGA 235 **** **************** ****** ***** ** ** * consensus_399#0 -TACTACAACATCACC----AGCACCTGGGTCGACTGGACGTCGATGATATTCATGATCC 639 consensus_399#1 ATACTACGGTCCCGTCTAAAAGCGTTGGAGGCTCTTNAAAAAAGGAGTAATATATT-CCC 294 ****** * * *** * * * * * * * ** ** ** consensus_399#0 TGTACATTCCGCTCATCTTTCCGGCCAGC----------------- 668 consensus_399#1 TGTGGNTTCCAAAAACNATCCGTGTAAGGCTCTGGTTTCTGGCGTG 340 *** **** * * * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||