cluster # 3995

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Anopheles gambiae
cluster # 3995 cluster # 3995 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3995#0 length = 769 sequences # 1

consensus_3995#1 length = 667 sequences # 1
consensus_3995#2 length = 556 sequences # 1

consensusID : consensus_3995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 769
fasta sequence

                              [CTCAGGCAGAATNGCCCGAGGTTTATGTANAAAAAGTGTAAAAAAACACAGTGCGTTCGCTGTTTGGACGACGATCTCGCTTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGTAGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTGCTCTAAGCTTTAGCTGACGCTGGACTGAACTATGGCTTCAAACGGGCAGCGCAGACTTTCGACTACCAGTCGTATGAACAACACTCACTGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAACACAGTTTCTCCAGAGTGCGGACACTGCTAACACGAATCGGTCCAAATTAAAGCGCTTACGTAGCGCAAGGGCGTTCCGGGGATCGCTCCGGCGGAACGCAGGTGTGNGACTGAGACACGTCCCGGGTGGCAAACAGACCCTAACACGCCAAACACGGGAACCCAAATCCTTATACCAAGGAACGCCTACCTTNACACTACGAACTTTCGGAATCAGGGAGCATACTCGGGAATCCAGACAGTCTTCAAAGCAACCACCCTTTCCGGAAATTTCACTTTTACCCNAAAAGGGAACAAAACCGGGGTATCGTTACCCCGGAGGAAGCACACAACATTAATTTCCCCACANTGTCTTTCAAGGGAACGACCCCACGGGTAAATNTCCAAGGGNGGTTAAAAAGAGGCGTCTTGGGTAAACCCAAAAGGCGTTNTCACGNTGGGNCAATTATTAGGCGCGCGAATTTATGGGCGTTCT]

[+] EMBL AL697583             [CTCAGGCAGAATNGCCCGAGGTTTATGTANAAAAAGTGTAAAAAAACACAGTGCGTTCGCTGTTTGGACGACGATCTCGCTTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGTAGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTGCTCTAAGCTTTAGCTGACGCTGGACTGAACTATGGCTTCAAACGGGCAGCGCAGACTTTCGACTACCAGTCGTATGAACAACACTCACTGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAACACAGTTTCTCCAGAGTGCGGACACTGCTAACACGAATCGGTCCAAATTAAAGCGCTTACGTAGCGCAAGGGCGTTCCGGGGATCGCTCCGGCGGAACGCAGGTGTGNGACTGAGACACGTCCCGGGTGGCAAACAGACCCTAACACGCCAAACACGGGAACCCAAATCCTTATACCAAGGAACGCCTACCTTNACACTACGAACTTTCGGAATCAGGGAGCATACTCGGGAATCCAGACAGTCTTCAAAGCAACCACCCTTTCCGGAAATTTCACTTTTACCCNAAAAGGGAACAAAACCGGGGTATCGTTACCCCGGAGGAAGCACACAACATTAATTTCCCCACANTGTCTTTCAAGGGAACGACCCCACGGGTAAATNTCCAAGGGNGGTTAAAAAGAGGCGTCTTGGGTAAACCCAAAAGGCGTTNTCACGNTGGGNCAATTATTAGGCGCGCGAATTTATGGGCGTTCT]




>consensus_3995#0
CTCAGGCAGAATNGCCCGAGGTTTATGTANAAAAAGTGTAAAAAAACACAGTGCGTTCGC
TGTTTGGACGACGATCTCGCTTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGT
AGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTGCTCTAAGCTTTAGCTGACGCT
GGACTGAACTATGGCTTCAAACGGGCAGCGCAGACTTTCGACTACCAGTCGTATGAACAA
CACTCACTGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAACACAGT
TTCTCCAGAGTGCGGACACTGCTAACACGAATCGGTCCAAATTAAAGCGCTTACGTAGCG
CAAGGGCGTTCCGGGGATCGCTCCGGCGGAACGCAGGTGTGNGACTGAGACACGTCCCGG
GTGGCAAACAGACCCTAACACGCCAAACACGGGAACCCAAATCCTTATACCAAGGAACGC
CTACCTTNACACTACGAACTTTCGGAATCAGGGAGCATACTCGGGAATCCAGACAGTCTT
CAAAGCAACCACCCTTTCCGGAAATTTCACTTTTACCCNAAAAGGGAACAAAACCGGGGT
ATCGTTACCCCGGAGGAAGCACACAACATTAATTTCCCCACANTGTCTTTCAAGGGAACG
ACCCCACGGGTAAATNTCCAAGGGNGGTTAAAAAGAGGCGTCTTGGGTAAACCCAAAAGG
CGTTNTCACGNTGGGNCAATTATTAGGCGCGCGAATTTATGGGCGTTCT

consensusID : consensus_3995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [CCGCCCACGCGTCCGAAAAAACCAGTGCGTTCGTGTTTTGGAGACGATCTCGTTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGTAGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTGTCTAAGTTTAGTGACGTGGATGAATATGGCTTCAAACGGGAGGCAGATTTCGACTACCAGTCGTATGAAAACATCATGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAAAAGTTTCTCCAGAGCGCGGACATGCTAAAGAATCGGTCCAAATTAAAGCGCTTCGTGCGCAAGGGCGTTCCGGGATCGCTCCGCGAAGAGGTGTGTATGAAAACGTCCGGCGCAAAAGACCTACAGCAAAAGGAACCAAATCTTTACCAGACGCTACTTACATACGAATTCGATCAGGAGATATCGGATCAAATTAAACTCGATCTTCCAAGAACGTTTCCGGACAATATCCATTTTGAGCAGTATCAGGTAAGCTTGTACAACGTTCTGATTGCGTTTGCTCACCACAATCGAACTGTCGGCTACTGTCAGGGGCTAAACTATATTGCTGGTTTATTGTTACTAGTGACTAAGAATGAAGTATCCTCGTTCTGGCTGCTAAAAGTGGTTGTTGAGAACATCGTACCGCTATA]

[+] EMBL BM656840             [CCGCCCACGCGTCCGAAAAAACCAGTGCGTTCGTGTTTTGGAGACGATCTCGTTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGTAGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTGTCTAAGTTTAGTGACGTGGATGAATATGGCTTCAAACGGGAGGCAGATTTCGACTACCAGTCGTATGAAAACATCATGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAAAAGTTTCTCCAGAGCGCGGACATGCTAAAGAATCGGTCCAAATTAAAGCGCTTCGTGCGCAAGGGCGTTCCGGGATCGCTCCGCGAAGAGGTGTGTATGAAAACGTCCGGCGCAAAAGACCTACAGCAAAAGGAACCAAATCTTTACCAGACGCTACTTACATACGAATTCGATCAGGAGATATCGGATCAAATTAAACTCGATCTTCCAAGAACGTTTCCGGACAATATCCATTTTGAGCAGTATCAGGTAAGCTTGTACAACGTTCTGATTGCGTTTGCTCACCACAATCGAACTGTCGGCTACTGTCAGGGGCTAAACTATATTGCTGGTTTATTGTTACTAGTGACTAAGAATGAAGTATCCTCGTTCTGGCTGCTAAAAGTGGTTGTTGAGAACATCGTACCGCTATA]




>consensus_3995#1
CCGCCCACGCGTCCGAAAAAACCAGTGCGTTCGTGTTTTGGAGACGATCTCGTTGATTTC
GTGGTAGGTGCAGTTTCGCATACGAAAAGTGTAGTGCCGTGCGTAGGAGACACCAAAACG
ACATGGCTGTGTCTAAGTTTAGTGACGTGGATGAATATGGCTTCAAACGGGAGGCAGATT
TCGACTACCAGTCGTATGAAAACATCATGTCCAGCTACCTTTCCGTGCTTACAACACGCA
GCATGCGCTGGCAAAAGTTTCTCCAGAGCGCGGACATGCTAAAGAATCGGTCCAAATTAA
AGCGCTTCGTGCGCAAGGGCGTTCCGGGATCGCTCCGCGAAGAGGTGTGTATGAAAACGT
CCGGCGCAAAAGACCTACAGCAAAAGGAACCAAATCTTTACCAGACGCTACTTACATACG
AATTCGATCAGGAGATATCGGATCAAATTAAACTCGATCTTCCAAGAACGTTTCCGGACA
ATATCCATTTTGAGCAGTATCAGGTAAGCTTGTACAACGTTCTGATTGCGTTTGCTCACC
ACAATCGAACTGTCGGCTACTGTCAGGGGCTAAACTATATTGCTGGTTTATTGTTACTAG
TGACTAAGAATGAAGTATCCTCGTTCTGGCTGCTAAAAGTGGTTGTTGAGAACATCGTAC
CGCTATA

consensusID : consensus_3995#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [CCCCGAGGGTTATTTTGAGCAGTATCAGGTAAGCTTGTACAACGTTCTGATTGCGTTTGCTCACCACAATCGAACTGTCGGCTACTGTCAGGGGGCTAAACTATATTGCTGGTTTATTGTTGCTAGTGACTAAGAATGAAGTATCCTCGTTCTGGCTACTAAAAGTGGTTGTTGAGAACATCGTACCGCTATATCATACAAAAACAATGGATAACCTCATTACCGATATTGAAGTGCTGAGCGAGACTAATCCGGCTGCGGGCACCTGACGTCCATCGGCACATCTTTGACTTGGAGATTACCCTGGTCCAGTGATATCANACCAAGATGGTTCATCTGCCTGTATGCCGAGGATAGTGACTCGATCGGAGATGCGATACTCCGGAATATGGCGACTCGTACTAGNGTACTCCAGGGTCATAGGANAAANATTGGTCCGCGATGGGGCCTAAACGAATCGGTTGCNCGGCGCTTTACGCGAAGGATCTGTGTGGCGGCAATGGAGGAGATTCTCGNAGGCTGACTCGGGNGACTGGTCTCAAATGCCTGTGTGCGA]

[+] EMBL AL697473             [CCCCGAGGGTTATTTTGAGCAGTATCAGGTAAGCTTGTACAACGTTCTGATTGCGTTTGCTCACCACAATCGAACTGTCGGCTACTGTCAGGGGGCTAAACTATATTGCTGGTTTATTGTTGCTAGTGACTAAGAATGAAGTATCCTCGTTCTGGCTACTAAAAGTGGTTGTTGAGAACATCGTACCGCTATATCATACAAAAACAATGGATAACCTCATTACCGATATTGAAGTGCTGAGCGAGACTAATCCGGCTGCGGGCACCTGACGTCCATCGGCACATCTTTGACTTGGAGATTACCCTGGTCCAGTGATATCANACCAAGATGGTTCATCTGCCTGTATGCCGAGGATAGTGACTCGATCGGAGATGCGATACTCCGGAATATGGCGACTCGTACTAGNGTACTCCAGGGTCATAGGANAAANATTGGTCCGCGATGGGGCCTAAACGAATCGGTTGCNCGGCGCTTTACGCGAAGGATCTGTGTGGCGGCAATGGAGGAGATTCTCGNAGGCTGACTCGGGNGACTGGTCTCAAATGCCTGTGTGCGA]




>consensus_3995#2
CCCCGAGGGTTATTTTGAGCAGTATCAGGTAAGCTTGTACAACGTTCTGATTGCGTTTGC
TCACCACAATCGAACTGTCGGCTACTGTCAGGGGGCTAAACTATATTGCTGGTTTATTGT
TGCTAGTGACTAAGAATGAAGTATCCTCGTTCTGGCTACTAAAAGTGGTTGTTGAGAACA
TCGTACCGCTATATCATACAAAAACAATGGATAACCTCATTACCGATATTGAAGTGCTGA
GCGAGACTAATCCGGCTGCGGGCACCTGACGTCCATCGGCACATCTTTGACTTGGAGATT
ACCCTGGTCCAGTGATATCANACCAAGATGGTTCATCTGCCTGTATGCCGAGGATAGTGA
CTCGATCGGAGATGCGATACTCCGGAATATGGCGACTCGTACTAGNGTACTCCAGGGTCA
TAGGANAAANATTGGTCCGCGATGGGGCCTAAACGAATCGGTTGCNCGGCGCTTTACGCG
AAGGATCTGTGTGGCGGCAATGGAGGAGATTCTCGNAGGCTGACTCGGGNGACTGGTCTC
AAATGCCTGTGTGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3995#0      CTCAGGCAGAATNGCCCGAGGTTTATGTANAAAAAGTGTAAAAAAACACAGTGCGTTCGC 60
consensus_3995#1      -------------------------CCGCCCACGCGTCCGAAAAAAC-CAGTGCGTTCG- 33
consensus_3995#2      --------------------------------------------------CCCCGAGGGT 10
                                                                           **   * 

consensus_3995#0      TGTTTGGACGACGATCTCGCTTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGT 120
consensus_3995#1      TGTTTTGGAGACGATCTCG-TTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGT 92
consensus_3995#2      TATTTTGA--GCAGTATCAGGTAAGCTTGTACAACGTTCTGATT-GCGTTTGCTCACCAC 67
                      * *** *    *  * **   * *  * **   * ** * * ** ** *  *   *    

consensus_3995#0      AGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTGCTCTAAGCTTTAGCTGACGCT 180
consensus_3995#1      AGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTG-TCTAAG-TTTAG-TGACG-T 148
consensus_3995#2      AAT-CGAACTGTCGGCTACTGTCAGGGGGCTAAACTATATTGCTGG-TTTAT-TGTTGCT 124
                      * * *     ** **  **    *   * *    ** *  *    * ****  **  * *

consensus_3995#0      GGACTGAACTATGGCTTCAAACGGGCAGCGCAGACTTTCGACTACCAGTCGTATGAACAA 240
consensus_3995#1      GGA-TGAA-TATGGCTTCAAACGGGAGGCAGA---TTTCGACTACCAGTCGTATGAA-AA 202
consensus_3995#2      AG---------TGACTAAGAATGAAGTATCCTCG-TTCTGGCTACTAAAAGTGGTTGTTG 174
                       *         ** **   ** *            **  * **** *   **        

consensus_3995#0      CACTCACTGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAACACAGT 300
consensus_3995#1      CA-TCA-TGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAAA--AGT 258
consensus_3995#2      AGAACATCGTACCGCTATATCAT-ACAAAAACAATGGATAACCT-CATTACCGATA---- 228
                          **  ** * ****  *          ****     * * * *  *  * *      

consensus_3995#0      TTCTCCAGAGTGCGGA-CACTGCTAACACGAATCGGTCCAAATTAAAGCGCTTACGTAGC 359
consensus_3995#1      TTCTCCAGAGCGCGGA-CA-TGCTAA--AGAATCGGTCCAAATTAAAGCGCTT-CGT-GC 312
consensus_3995#2      ----TTGAAGTGCTGAGCGAGACTAATCCGGCTGCGGGCAC-CTGACGTCCAT---CGGC 280
                              ** ** ** *    ****   *  *  *  **   * * *  * *     **

consensus_3995#0      GCAAGGGCGTTCCGGGGATCGCTCCGGCGGAACGCAGGTGTGNGACTGAGACACGTC-CC 418
consensus_3995#1      GCAAGGGCGTTCCGGG-ATCGCTCCG------CGAAGAGGTGTGTATGAAA-ACGTC-CG 363
consensus_3995#2      ACATCTTTGACTTGGAGATTACCCTGGTC---CAGTGATATCANACCAAGATGGTTCATC 337
                       **     *    **  **  * * *      *   *   *       * *    **   

consensus_3995#0      GGGTGGCAAACAGACCCTAACACGCCAAACACGGGAACCCAAATCCTTATACCAAGGAAC 478
consensus_3995#1      GCGC----AAAAGACC----TACAGCAAA----AGGAACCAAATCTTT--ACCAG---AC 406
consensus_3995#2      TGCCTGTATGCCGAGGATAGTGACTCGATCG-GAGATGCGATACTCCGGAATATGGCGAC 396
                                  **           * *      *   * * *       *       **

consensus_3995#0      GCCTACCTTNACACTACGAACTTTCGGAATCAGGG--AGCATACTCGGGAATCCAGA-CA 535
consensus_3995#1      GC-TACTTACA---TACGAATTC----GATCAGGA--GATATCGGATCAAATTAAACTCG 456
consensus_3995#2      TCGTACTAGNGTACTCCAGGGTCATAGGANAAANATTGGTCCGCGATGGGGCCTAAACGA 456
                       * ***        * *    *      *  *                      *     

consensus_3995#0      GTCTTCAAAGCAACCACCCTTTCCGGA-AATTTCACTTTTACCCNAAAAGGGAACAAAAC 594
consensus_3995#1      ATCTTCCAAGAA-----CGTTTCCGGACAATATCCATTTTGAGCAGTATCAGGT--AAGC 509
consensus_3995#2      ATCGGTTGCNCG---GCGCTTTACGCGAAGGATCTGTGTGGCGGCAATGGAGGA---GAT 510
                       **                *** **   *   **  * *            *        

consensus_3995#0      CGGGGTATCGTTACCCCGGAGGAAGCACACAACA-TTAATTTCCCCACANTGTCTTTCAA 653
consensus_3995#1      TTGTACAACGTTCTGATTGCGTTTGCTCACCACAATCGAACTGTCGGCTA---CTGTCAG 566
consensus_3995#2      TCTCGNAGGCTGACTCGGGNGACTGGTCTCAAAT----GCCTGTGTGCGA---------- 556
                            *   *       * *   *  * * *         *     *            

consensus_3995#0      GGG---AACGACCCCACGGGTAAATNTCCAAGGGNGGTTAAAAA-GAGGCGTCTTGGGTA 709
consensus_3995#1      GGGCTAAACTATATTGCTGGTTTATTGTTACTAGTGACTAAGAATGAAGTATCCTCGTTC 626
consensus_3995#2      ------------------------------------------------------------
                                                                                  

consensus_3995#0      AACCCAAAAGGCGTTNTCACGNTGGGNCAATTATTAGGCGCGCGAATTTATGGGCGTTCT 769
consensus_3995#1      TGGCTGCTAAAAGTGGT--TGTTGAGAACATCGT--ACCGCTATA--------------- 667
consensus_3995#2      ------------------------------------------------------------