These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence [CTCAGGCAGAATNGCCCGAGGTTTATGTANAAAAAGTGTAAAAAAACACAGTGCGTTCGCTGTTTGGACGACGATCTCGCTTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGTAGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTGCTCTAAGCTTTAGCTGACGCTGGACTGAACTATGGCTTCAAACGGGCAGCGCAGACTTTCGACTACCAGTCGTATGAACAACACTCACTGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAACACAGTTTCTCCAGAGTGCGGACACTGCTAACACGAATCGGTCCAAATTAAAGCGCTTACGTAGCGCAAGGGCGTTCCGGGGATCGCTCCGGCGGAACGCAGGTGTGNGACTGAGACACGTCCCGGGTGGCAAACAGACCCTAACACGCCAAACACGGGAACCCAAATCCTTATACCAAGGAACGCCTACCTTNACACTACGAACTTTCGGAATCAGGGAGCATACTCGGGAATCCAGACAGTCTTCAAAGCAACCACCCTTTCCGGAAATTTCACTTTTACCCNAAAAGGGAACAAAACCGGGGTATCGTTACCCCGGAGGAAGCACACAACATTAATTTCCCCACANTGTCTTTCAAGGGAACGACCCCACGGGTAAATNTCCAAGGGNGGTTAAAAAGAGGCGTCTTGGGTAAACCCAAAAGGCGTTNTCACGNTGGGNCAATTATTAGGCGCGCGAATTTATGGGCGTTCT] [+] EMBL AL697583 [CTCAGGCAGAATNGCCCGAGGTTTATGTANAAAAAGTGTAAAAAAACACAGTGCGTTCGCTGTTTGGACGACGATCTCGCTTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGTAGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTGCTCTAAGCTTTAGCTGACGCTGGACTGAACTATGGCTTCAAACGGGCAGCGCAGACTTTCGACTACCAGTCGTATGAACAACACTCACTGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAACACAGTTTCTCCAGAGTGCGGACACTGCTAACACGAATCGGTCCAAATTAAAGCGCTTACGTAGCGCAAGGGCGTTCCGGGGATCGCTCCGGCGGAACGCAGGTGTGNGACTGAGACACGTCCCGGGTGGCAAACAGACCCTAACACGCCAAACACGGGAACCCAAATCCTTATACCAAGGAACGCCTACCTTNACACTACGAACTTTCGGAATCAGGGAGCATACTCGGGAATCCAGACAGTCTTCAAAGCAACCACCCTTTCCGGAAATTTCACTTTTACCCNAAAAGGGAACAAAACCGGGGTATCGTTACCCCGGAGGAAGCACACAACATTAATTTCCCCACANTGTCTTTCAAGGGAACGACCCCACGGGTAAATNTCCAAGGGNGGTTAAAAAGAGGCGTCTTGGGTAAACCCAAAAGGCGTTNTCACGNTGGGNCAATTATTAGGCGCGCGAATTTATGGGCGTTCT] consensusID : consensus_3995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [CCGCCCACGCGTCCGAAAAAACCAGTGCGTTCGTGTTTTGGAGACGATCTCGTTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGTAGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTGTCTAAGTTTAGTGACGTGGATGAATATGGCTTCAAACGGGAGGCAGATTTCGACTACCAGTCGTATGAAAACATCATGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAAAAGTTTCTCCAGAGCGCGGACATGCTAAAGAATCGGTCCAAATTAAAGCGCTTCGTGCGCAAGGGCGTTCCGGGATCGCTCCGCGAAGAGGTGTGTATGAAAACGTCCGGCGCAAAAGACCTACAGCAAAAGGAACCAAATCTTTACCAGACGCTACTTACATACGAATTCGATCAGGAGATATCGGATCAAATTAAACTCGATCTTCCAAGAACGTTTCCGGACAATATCCATTTTGAGCAGTATCAGGTAAGCTTGTACAACGTTCTGATTGCGTTTGCTCACCACAATCGAACTGTCGGCTACTGTCAGGGGCTAAACTATATTGCTGGTTTATTGTTACTAGTGACTAAGAATGAAGTATCCTCGTTCTGGCTGCTAAAAGTGGTTGTTGAGAACATCGTACCGCTATA] [+] EMBL BM656840 [CCGCCCACGCGTCCGAAAAAACCAGTGCGTTCGTGTTTTGGAGACGATCTCGTTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGTAGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTGTCTAAGTTTAGTGACGTGGATGAATATGGCTTCAAACGGGAGGCAGATTTCGACTACCAGTCGTATGAAAACATCATGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAAAAGTTTCTCCAGAGCGCGGACATGCTAAAGAATCGGTCCAAATTAAAGCGCTTCGTGCGCAAGGGCGTTCCGGGATCGCTCCGCGAAGAGGTGTGTATGAAAACGTCCGGCGCAAAAGACCTACAGCAAAAGGAACCAAATCTTTACCAGACGCTACTTACATACGAATTCGATCAGGAGATATCGGATCAAATTAAACTCGATCTTCCAAGAACGTTTCCGGACAATATCCATTTTGAGCAGTATCAGGTAAGCTTGTACAACGTTCTGATTGCGTTTGCTCACCACAATCGAACTGTCGGCTACTGTCAGGGGCTAAACTATATTGCTGGTTTATTGTTACTAGTGACTAAGAATGAAGTATCCTCGTTCTGGCTGCTAAAAGTGGTTGTTGAGAACATCGTACCGCTATA] consensusID : consensus_3995#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [CCCCGAGGGTTATTTTGAGCAGTATCAGGTAAGCTTGTACAACGTTCTGATTGCGTTTGCTCACCACAATCGAACTGTCGGCTACTGTCAGGGGGCTAAACTATATTGCTGGTTTATTGTTGCTAGTGACTAAGAATGAAGTATCCTCGTTCTGGCTACTAAAAGTGGTTGTTGAGAACATCGTACCGCTATATCATACAAAAACAATGGATAACCTCATTACCGATATTGAAGTGCTGAGCGAGACTAATCCGGCTGCGGGCACCTGACGTCCATCGGCACATCTTTGACTTGGAGATTACCCTGGTCCAGTGATATCANACCAAGATGGTTCATCTGCCTGTATGCCGAGGATAGTGACTCGATCGGAGATGCGATACTCCGGAATATGGCGACTCGTACTAGNGTACTCCAGGGTCATAGGANAAANATTGGTCCGCGATGGGGCCTAAACGAATCGGTTGCNCGGCGCTTTACGCGAAGGATCTGTGTGGCGGCAATGGAGGAGATTCTCGNAGGCTGACTCGGGNGACTGGTCTCAAATGCCTGTGTGCGA] [+] EMBL AL697473 [CCCCGAGGGTTATTTTGAGCAGTATCAGGTAAGCTTGTACAACGTTCTGATTGCGTTTGCTCACCACAATCGAACTGTCGGCTACTGTCAGGGGGCTAAACTATATTGCTGGTTTATTGTTGCTAGTGACTAAGAATGAAGTATCCTCGTTCTGGCTACTAAAAGTGGTTGTTGAGAACATCGTACCGCTATATCATACAAAAACAATGGATAACCTCATTACCGATATTGAAGTGCTGAGCGAGACTAATCCGGCTGCGGGCACCTGACGTCCATCGGCACATCTTTGACTTGGAGATTACCCTGGTCCAGTGATATCANACCAAGATGGTTCATCTGCCTGTATGCCGAGGATAGTGACTCGATCGGAGATGCGATACTCCGGAATATGGCGACTCGTACTAGNGTACTCCAGGGTCATAGGANAAANATTGGTCCGCGATGGGGCCTAAACGAATCGGTTGCNCGGCGCTTTACGCGAAGGATCTGTGTGGCGGCAATGGAGGAGATTCTCGNAGGCTGACTCGGGNGACTGGTCTCAAATGCCTGTGTGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3995#0 CTCAGGCAGAATNGCCCGAGGTTTATGTANAAAAAGTGTAAAAAAACACAGTGCGTTCGC 60 consensus_3995#1 -------------------------CCGCCCACGCGTCCGAAAAAAC-CAGTGCGTTCG- 33 consensus_3995#2 --------------------------------------------------CCCCGAGGGT 10 ** * consensus_3995#0 TGTTTGGACGACGATCTCGCTTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGT 120 consensus_3995#1 TGTTTTGGAGACGATCTCG-TTGATTTCGTGGTAGGTGCAGTTTCGCATACGAAAAGTGT 92 consensus_3995#2 TATTTTGA--GCAGTATCAGGTAAGCTTGTACAACGTTCTGATT-GCGTTTGCTCACCAC 67 * *** * * * ** * * * ** * ** * * ** ** * * * consensus_3995#0 AGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTGCTCTAAGCTTTAGCTGACGCT 180 consensus_3995#1 AGTGCCGTGCGTAGGAGACACCAAAACGACATGGCTGTG-TCTAAG-TTTAG-TGACG-T 148 consensus_3995#2 AAT-CGAACTGTCGGCTACTGTCAGGGGGCTAAACTATATTGCTGG-TTTAT-TGTTGCT 124 * * * ** ** ** * * * ** * * * **** ** * * consensus_3995#0 GGACTGAACTATGGCTTCAAACGGGCAGCGCAGACTTTCGACTACCAGTCGTATGAACAA 240 consensus_3995#1 GGA-TGAA-TATGGCTTCAAACGGGAGGCAGA---TTTCGACTACCAGTCGTATGAA-AA 202 consensus_3995#2 AG---------TGACTAAGAATGAAGTATCCTCG-TTCTGGCTACTAAAAGTGGTTGTTG 174 * ** ** ** * ** * **** * ** consensus_3995#0 CACTCACTGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAACACAGT 300 consensus_3995#1 CA-TCA-TGTCCAGCTACCTTTCCGTGCTTACAACACGCAGCATGCGCTGGCAAA--AGT 258 consensus_3995#2 AGAACATCGTACCGCTATATCAT-ACAAAAACAATGGATAACCT-CATTACCGATA---- 228 ** ** * **** * **** * * * * * * * consensus_3995#0 TTCTCCAGAGTGCGGA-CACTGCTAACACGAATCGGTCCAAATTAAAGCGCTTACGTAGC 359 consensus_3995#1 TTCTCCAGAGCGCGGA-CA-TGCTAA--AGAATCGGTCCAAATTAAAGCGCTT-CGT-GC 312 consensus_3995#2 ----TTGAAGTGCTGAGCGAGACTAATCCGGCTGCGGGCAC-CTGACGTCCAT---CGGC 280 ** ** ** * **** * * * ** * * * * * ** consensus_3995#0 GCAAGGGCGTTCCGGGGATCGCTCCGGCGGAACGCAGGTGTGNGACTGAGACACGTC-CC 418 consensus_3995#1 GCAAGGGCGTTCCGGG-ATCGCTCCG------CGAAGAGGTGTGTATGAAA-ACGTC-CG 363 consensus_3995#2 ACATCTTTGACTTGGAGATTACCCTGGTC---CAGTGATATCANACCAAGATGGTTCATC 337 ** * ** ** * * * * * * * * ** consensus_3995#0 GGGTGGCAAACAGACCCTAACACGCCAAACACGGGAACCCAAATCCTTATACCAAGGAAC 478 consensus_3995#1 GCGC----AAAAGACC----TACAGCAAA----AGGAACCAAATCTTT--ACCAG---AC 406 consensus_3995#2 TGCCTGTATGCCGAGGATAGTGACTCGATCG-GAGATGCGATACTCCGGAATATGGCGAC 396 ** * * * * * * * ** consensus_3995#0 GCCTACCTTNACACTACGAACTTTCGGAATCAGGG--AGCATACTCGGGAATCCAGA-CA 535 consensus_3995#1 GC-TACTTACA---TACGAATTC----GATCAGGA--GATATCGGATCAAATTAAACTCG 456 consensus_3995#2 TCGTACTAGNGTACTCCAGGGTCATAGGANAAANATTGGTCCGCGATGGGGCCTAAACGA 456 * *** * * * * * * consensus_3995#0 GTCTTCAAAGCAACCACCCTTTCCGGA-AATTTCACTTTTACCCNAAAAGGGAACAAAAC 594 consensus_3995#1 ATCTTCCAAGAA-----CGTTTCCGGACAATATCCATTTTGAGCAGTATCAGGT--AAGC 509 consensus_3995#2 ATCGGTTGCNCG---GCGCTTTACGCGAAGGATCTGTGTGGCGGCAATGGAGGA---GAT 510 ** *** ** * ** * * * consensus_3995#0 CGGGGTATCGTTACCCCGGAGGAAGCACACAACA-TTAATTTCCCCACANTGTCTTTCAA 653 consensus_3995#1 TTGTACAACGTTCTGATTGCGTTTGCTCACCACAATCGAACTGTCGGCTA---CTGTCAG 566 consensus_3995#2 TCTCGNAGGCTGACTCGGGNGACTGGTCTCAAAT----GCCTGTGTGCGA---------- 556 * * * * * * * * * * consensus_3995#0 GGG---AACGACCCCACGGGTAAATNTCCAAGGGNGGTTAAAAA-GAGGCGTCTTGGGTA 709 consensus_3995#1 GGGCTAAACTATATTGCTGGTTTATTGTTACTAGTGACTAAGAATGAAGTATCCTCGTTC 626 consensus_3995#2 ------------------------------------------------------------ consensus_3995#0 AACCCAAAAGGCGTTNTCACGNTGGGNCAATTATTAGGCGCGCGAATTTATGGGCGTTCT 769 consensus_3995#1 TGGCTGCTAAAAGTGGT--TGTTGAGAACATCGT--ACCGCTATA--------------- 667 consensus_3995#2 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||