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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4004#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 869 fasta sequence
[CCGATTTAACAGAGAAATGAAACCTCTCACACACATACACTAAGCAAAAGCGTCAAAGTATTTGGTCACGCTCAAGCGGTCTTGCGTAGAGACATGCAGTAGCAGAAAGTGGCATGATATCACGGTTCTGCGCCATTCGGTTCAGTTCAGTCGTCCACACAGTCGCAAGATGTGTTTTATGAATGTTTAAAAACGGCCGCCAAATATCGGTTAAACAAATTTGAGACACACACACACACACACACATACAGCCACACGCCAACACGACGGACGCACACATACAAATACACGCACGCACACGCACTCGTCATCTTCTTTCTTAGAAAATATTATTGTAATTTGCGATCTCGCACACGGGCAACCTGGTGGTGCGAGACGACCGTTAGTGTGTGTTGTAGAGCACAAGGCACACAGGCAAAGTTTAGTAAAGTTAAGAAGCAATCGTGTTAGTAAATGTTTAACTTAATACCCCTTCCTTCCCCCCGGTTTGATTACCATTATGCTCGAACCACTCCCTCGCTCCTCGAACGCCGCGAACGAACTGTAGCCGCGCCGCGTAACTCAAGCGTTCCGGTCTTGTCCCATTTCATTTGCTCCCGCCAATGTGCATTCCAAAGCCTATTACCCGATCGTGTGTGTGTGTGTGTGTTTGTATGAGGGGCGGGTTTCCGAGCGAGTTGGATTGTGAGTTGCATTGCGTTGATTGAAACGTTTCGTTCGTGTTGAAAATGTATCCACAGGTAACCCGCTCTCCCGCCCCACCCCCAAAACAGTGGAGTAAAGTGTATCCGTTTCTCTTCATATCGCAATCTTAGGGTTATGTATATTTCGTGTGGGTCAGAGAAGAGACAGAANAACAAAAAGCACGG]
[+] EMBL BM642818 [CCGATTTAACAGAGAAATGAAACCTCTCACACACATACACTAAGCAAAAGCGTCAAAGTATTTGGTCACGCTCAAGCGGTCTTGCGTAGAGACATGCAGTAGCAGAAAGTGGCATGATATCACGGTTCTGCGCCATTCGGTTCAGTTCAGTCGTCCACACAGTCGCAAGATGTGTTTTATGAATGTTTAAAAACGGCCGCCAAATATCGGTTAAACAAATTTGAGACACACACACACACACACACATACAGCCACACGCCAACACGACGGACGCACACATACAAATACACGCACGCACACGCACTCGTCATCTTCTTTCTTAGAAAATATTATTGTAATTTGCGATCTCGCACACGGGCAACCTGGTGGTGCGAGACGACCGTTAGTGTGTGTTGTAGAGCACAAGGCACACAGGCAAAGTTTAGTAAAGTTAAGAAGCAATCGTGTTAGTAAATGTTTAACTTAATACCCCTTCCTTCCCCCCGGTTTGATTACCATTATGCTCGAACCACTCCCTCGCTCCTCGAACGCCGCGAACGAACTGTAGCCGCGCCGCGTAACTCAAGCGTTCCGGTCTTGTCCCATTTCATTTGCTCCCGCCAATGTGCATTCCAAAGCCTATTACCCGATCGTGTGTGTGTGTGTGTGTTTGTATG ]
[+] EMBL AL929642 [ ccgaggttACAA GCACACAGGC AAG TTAGT AAGTT AGAAGCAATCGTGTTAGTAAATGTTTAACTTAATACCCCTTCCTTCCCCCCGGTTTGATTACCATTATGCTCGAACCACTCCCTCGCTCCTCGAACGCCGCGAACGAACTGTAGCCGCGCCGCGTAACTCAAGCGTTCCGGTCTTGTCCCATTTCATTTGCTCCCGCCAATGTGCATTCCAAAGCCTATTACCCGATCGTGTGTGTGTGTGTGTGCTCCTAGCAGGGGCGGGTTTCCGAGCGAGTTGGATTGTGAGTTGCATTGCGTTGATTGAAACGTTTCGTTCGTGTTGAAAATGTATCCACAGGTAACCCGCTCTCCCGCCCCACCCCCAAAACAGTGGAGTAAAGTGTATCCGTTTCTCTTCATATCGCAATCTTAGGGTTATGTATATTTCGTGTGGGTCAGAGAAGAGACAGAANAACAAAAAGCACGG]
consensusID : consensus_4004#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence
[GAAAGAGAAAAGAGAGGGAGAAAGAGAAAGGAATAGAGAGAAAGAATTGTAATAAATAAACAGAGCGACAACTAAAAAAGGGAAAAGACAAGAAAAAAGATCACAAACACGAACATAACAAAAAAAACAAATCAAACTGAAAAGTTATCCAATTCAAAAGATAAAGCAGAAAACACAAAAGCAAACGTTCAGCCGGATTGGTCCTAAATAGAGAAGATAACGGAAGTTGGCCAAAAAAAAGAAAACAATTCAAATAGAAAGAAAAATCACAAACAAACGACAAAAAAGGCAAAAAACATACAGCACACCTTACGCACAAATTGTAATGATTTGAATGTTCAGCATTTCCTCCAATCCGTTACCCATCTCCCATGCAGGCTAGCTGTGGACACCAACACAAGGCAAAAGAGGAAGTGTATCGGCACAAAACCAGCACGATTATTATTACATTCTTGTACTATCGTTTCATGCGCACGCACCTTACGCCTCGCAAAAGGATGCTGCTTGTTGATTGCAATTGAGTGTTAATTAAAGTGCAGAACTTAACAGAGGAACGAAAACTCTCTCTCACGTACATACGTTCTAACGCTCACGCGGTGTTGCGTTGAGTAGCAGTGCAGTAGCAGGAAGTGGCATGCTATCACGGTTCTGCGCCATTCGGTTCAGTTCAGCCGGATTGGTCCTAAATAGAGAAGATAACAGAGGAACGAAAACTCTCTCTCACGTACATACGTTCTAACGCTCACGCGGTGTTG]
[+] EMBL BX621453 [GAAAGAGAAAAGAGAGGGAGAAAGAGAAAGGAATAGAGAGAAAGAATTGTAATAAATAAACAGAGCGACAACTAAAAAAGGGAAAAGACAAGAAAAAAGATCACAAACACGAACATAACAAAAAAAACAAATCAAACTGAAAAGTTATCCAATTCAAAAGATAAAGCAGAAAACACAAAAGCAAACGTTCAGCCGGATTGGTCCTAAATAGAGAAGATAACGGAAGTTGGCCAAAAAAAAGAAAACAATTCAAATAGAAAGAAAAATCACAAACAAACGACAAAAAAGGCAAAAAACATACAGCACACCTTACGCACAAATTGTAATGATTTGAATGTTCAGCATTTCCTCCAATCCGTTACCCATCTCCCATGCAGGCTAGCTGTGGACACCAACACAAGGCAAAAGAGGAAGTGTATCGGCACAAAACCAGCACGATTATTATTACATTCTTGTACTATCGTTTCATGCGCACGCACCTTACGCCTCGCAAAAGGATGCTGCTTGTTGATTGCAATTGAGTGTTAATTAAAGTGCAGAACTTAACAGAGGAACGAAAACTCTCTCTCACGTACATACGTTCTAACGCTCACGCGGTGTTGCGTTGAGTAGCAGTGCAGTAGCAGGAAGTGGCATGCTATCACGGTTCTGCGCCATTCGGTTCAGTTCAGCCGGATTGGTCCTAAATAGAGAAGATAACAGAGGAACGAAAACTCTCTCTCACGTACATACGTTCTAACGCTCACGCGGTGTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4004#0 CCGATTTAACAGAGAAATGAAACCTCTCACACACATACACTAAGCAAAAGCGTCAAAGTA 60
consensus_4004#1 ------------------------------------------------------------
consensus_4004#0 TTTGGTCACGCTCAAGCGGTCTTGCGTAGAGACATGCAGTAGCAGAAAGTGGCATGATAT 120
consensus_4004#1 --------------------------------------------GAAAGAGAAAAGAGAG 16
***** * * ** *
consensus_4004#0 CACGGTTCTGCGCCATTCGGTTCAGTTCAGTCGTCCACACAGTCGCAAGATGTGTTTTAT 180
consensus_4004#1 GGAGAAAGAGAAAGGAATAGAGAGAAAGAATTGTA-ATAAATAAACAGAGCGACAACTAA 75
* * * * * ** * * * ** * **
consensus_4004#0 GAATGTTTAAAAACGGCCGCCAAATATCGGTTAAACAAATTTGAGACACACACACACACA 240
consensus_4004#1 AAAAGGGAAAAGACAAGAAA-AAAGATCACAAACACGAACATAACAAAAA-AAACAAATC 133
** * *** ** *** *** * ** ** * * * * * * *** *
consensus_4004#0 CACACATACAGCCACACGCCAACACGACGGACGCACACATACAAATACACGCACGCACAC 300
consensus_4004#1 AAACTGAAAAGTTAT---CCAATTCAAAAGATA-AAGCAGA-AAACACAAAAGCAAACGT 188
* * ** * **** * * ** * ** * *** *** * **
consensus_4004#0 GCACTCGTCATCTTCTTTCTTAGAAAATATTATTGTAATTTGCGATCTCGCACACGGGCA 360
consensus_4004#1 TCAGCCGGATTGGTCCTAAATAGAGAAGATAACGGAAGTTGGCCAAAAAAAAGAAAACAA 248
** ** * ** * **** ** ** * * * ** ** * * * *
consensus_4004#0 ACCTGGTGGTGCGAGACGACCGTTAGTGTGTGTTGTAGAGCACAAGGCACACA-GGCAAA 419
consensus_4004#1 TTCAAATAGAAAGAAA-AATCACAAACAAACGACAAAAAAGGCAAAAAACATACAGCACA 307
* * * ** * * * * * * * *** *** * *** *
consensus_4004#0 GTTTAGTAAAGTTAAGAAGCAATCGTGTTAGTAAATGTTTAACTTAATACCCCTTCCTTC 479
consensus_4004#1 CCTTACGCA---CAAATTGTAATGATTT----GAATGTTCAGCATTTCCTCCAATCCGTT 360
*** * ** * *** * * ****** * * * ** *** *
consensus_4004#0 CCCCCGGTTTGATTACCATTATGCTCGAACCACTCCCTCGCTCCTCGAACGCCGCGAACG 539
consensus_4004#1 ACCCATCTCCCATGCAGGCTAGCTGTGGACACCAACACAAGGCAAAAGAGGAAGTGTATC 420
*** * ** ** * ** * * * * * * * *
consensus_4004#0 AACTGTAGCCGCGCCGCGTAACTCAAGCGTTCCGGTCTTGTCCCATTTCATTTGCTCCCG 599
consensus_4004#1 GGCACAAAACCAGCACGATTATTATTACATTCTTGTACTAT--CGTTTCATGCGCACGCA 478
* * * ** * * * * *** ** * * * ****** ** * *
consensus_4004#0 CCAATGTGCATTCCAAA-GCCTATTACCCGATCGTGTGTGTGTGTGTGTGTTTGTATGAG 658
consensus_4004#1 CCT-TACGCCTCGCAAAAGGATGCTGCTTGTTGAT---TGCAATTGAGTGTTAATTAAAG 534
** * ** * **** * * * * * * * ** ** ***** * **
consensus_4004#0 GGGCGGGTTTCCGAGCGAGTTGGATTGTGAGTTGCAT-TGCGTTGATTGAAACGTTT-CG 716
consensus_4004#1 TGCAGAACTTAACAGAGGAACGAAAACTCTCTCTCACGTACATACGTTCTAACGCTCACG 594
* * ** ** * * * * * ** * * * ** **** * **
consensus_4004#0 T----TCGTGTTGAA----AATGTATCCACAGG---TAACCCGCTCTCCCGCCCCACCCC 765
consensus_4004#1 CGGTGTTGCGTTGAGTAGCAGTGCAGTAGCAGGAAGTGGCATGCTATCACGGTTCTGCGC 654
* * ***** * ** * **** * * *** ** ** * * *
consensus_4004#0 CAAAACAGTGGAGTAAAGTGTATCCGTTTCTCTTCATATCGCAATCTTAGGGTTATGTAT 825
consensus_4004#1 CATT-CGGTTCAGTTCAGCCGGATTGGTCCTAAATAGAG-AAGATAACAGAGGAACGAAA 712
** * ** *** ** * * ** * * ** ** * * * *
consensus_4004#0 ATTTCGTGTGGGTCAGAGAAGAGACAGAANAACAAAAAGCACGG 869
consensus_4004#1 ACTCTCTCTCACGTACATACGTTCTAACGCT-CACGCGGTGTTG 755
* * * * * * * * * ** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||