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Anopheles gambiae
cluster # 401 cluster # 401       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_401#0 length = 552 sequences # 1  
consensus_401#1 length = 149 sequences # 1  

consensusID : consensus_401#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAGCGGCCCAGCAGCGGGTGAACGCGCTGAAGCATCTGCAGGTCGAGTACACCAAGCTGGAGGCGAAGTTCTTCGAAGAGGTGTACCAGCTGGAGTGTAAATATCAGCAGCTCTACCAGCCGATCGTCGACCGGCGAAAGGAGATCGTGTCCGGCAAGGCCGACCCGACGCCGGAGGAGGCGGCCTGGGTGGATCCACCGCGCAAGAAGGAGGACGGCGAGGACGAGGAGGAGCAGGAGGAGGAGGACGACGAGATTAACGAGAAGCTGAAGAAGATGGCGCTCAACTACCACAAGGAGCTGCCGGCGAACGGGCAGGGCATCCCGAACTTCTGGCTGATGGTGTTCAAGAACACGGAAGCGCTGGCCGAGCTGGTGCACCCGCACGACGAGCCGGTGCTGGAGTACCTGCGCAACCTGAACATCGTGTACGAGAAGGAGCCGATGTCGTACGTGATCGAGTTCCACTTCGACCCGAACCCGTACTTCAAGGACACGGTGCTGACGAAGAAGTACTTCCTGCG]

[+] EMBL BM630837             [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAGCGGCCCAGCAGCGGGTGAACGCGCTGAAGCATCTGCAGGTCGAGTACACCAAGCTGGAGGCGAAGTTCTTCGAAGAGGTGTACCAGCTGGAGTGTAAATATCAGCAGCTCTACCAGCCGATCGTCGACCGGCGAAAGGAGATCGTGTCCGGCAAGGCCGACCCGACGCCGGAGGAGGCGGCCTGGGTGGATCCACCGCGCAAGAAGGAGGACGGCGAGGACGAGGAGGAGCAGGAGGAGGAGGACGACGAGATTAACGAGAAGCTGAAGAAGATGGCGCTCAACTACCACAAGGAGCTGCCGGCGAACGGGCAGGGCATCCCGAACTTCTGGCTGATGGTGTTCAAGAACACGGAAGCGCTGGCCGAGCTGGTGCACCCGCACGACGAGCCGGTGCTGGAGTACCTGCGCAACCTGAACATCGTGTACGAGAAGGAGCCGATGTCGTACGTGATCGAGTTCCACTTCGACCCGAACCCGTACTTCAAGGACACGGTGCTGACGAAGAAGTACTTCCTGCG]


>consensus_401#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGAAGCGGCCCAGCAGCGGGTGAACGCGCTGAA GCATCTGCAGGTCGAGTACACCAAGCTGGAGGCGAAGTTCTTCGAAGAGGTGTACCAGCT GGAGTGTAAATATCAGCAGCTCTACCAGCCGATCGTCGACCGGCGAAAGGAGATCGTGTC CGGCAAGGCCGACCCGACGCCGGAGGAGGCGGCCTGGGTGGATCCACCGCGCAAGAAGGA GGACGGCGAGGACGAGGAGGAGCAGGAGGAGGAGGACGACGAGATTAACGAGAAGCTGAA GAAGATGGCGCTCAACTACCACAAGGAGCTGCCGGCGAACGGGCAGGGCATCCCGAACTT CTGGCTGATGGTGTTCAAGAACACGGAAGCGCTGGCCGAGCTGGTGCACCCGCACGACGA GCCGGTGCTGGAGTACCTGCGCAACCTGAACATCGTGTACGAGAAGGAGCCGATGTCGTA CGTGATCGAGTTCCACTTCGACCCGAACCCGTACTTCAAGGACACGGTGCTGACGAAGAA GTACTTCCTGCG



consensusID : consensus_401#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 149
fasta sequence
                              [CCGCCCACGCGTCCGCAAGATGTCGAACAACATTGCAATCCTCCTGCTGGCTGTTCTGGTTGCGGTGGTCGCTTGTGCATCAAGCACAACCATCCGGGCGGCATCACTTGGTCCATCCACTGCTGCCCAGATTCCTGCCTCAGCTTCAT]

[+] EMBL BM615070             [CCGCCCACGCGTCCGCAAGATGTCGAACAACATTGCAATCCTCCTGCTGGCTGTTCTGGTTGCGGTGGTCGCTTGTGCATCAAGCACAACCATCCGGGCGGCATCACTTGGTCCATCCACTGCTGCCCAGATTCCTGCCTCAGCTTCAT]


>consensus_401#1 CCGCCCACGCGTCCGCAAGATGTCGAACAACATTGCAATCCTCCTGCTGGCTGTTCTGGT TGCGGTGGTCGCTTGTGCATCAAGCACAACCATCCGGGCGGCATCACTTGGTCCATCCAC TGCTGCCCAGATTCCTGCCTCAGCTTCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_401#0      CCGCCCACGCGTCCGCCCACGCGTCCGGGAAGCGGCCCAGCAGCGGGTGAACGCGCTGAA 60
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      GCATCTGCAGGTCGAGTACACCAAGCTGGAGGCGAAGTTCTTCGAAGAGGTGTACCAGCT 120
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      GGAGTGTAAATATCAGCAGCTCTACCAGCCGATCGTCGACCGGCGAAAGGAGATCGTGTC 180
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      CGGCAAGGCCGACCCGACGCCGGAGGAGGCGGCCTGGGTGGATCCACCGCGCAAGAAGGA 240
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      GGACGGCGAGGACGAGGAGGAGCAGGAGGAGGAGGACGACGAGATTAACGAGAAGCTGAA 300
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      GAAGATGGCGCTCAACTACCACAAGGAGCTGCCGGCGAACGGGCAGGGCATCCCGAACTT 360
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      CTGGCTGATGGTGTTCAAGAACACGGAAG-CGCTGGCCGAGCTGGTGCACCCGCACGACG 419
consensus_401#1      ----------CCGCCCACGCGTCCGCAAGATGTCGAACAACAT--TGCAATCCTCCTGCT 48
                                 *  ** *    ** ***  *  *  * *  *  ****  *   *  * 

consensus_401#0      AGCCGGTGCTGGAGTACCTGCGCAACCTGAACATCGTGTACGAGAAGG-AGCCGATGTCG 478
consensus_401#1      GGCTGTT-CTGGT-TGCGGTGGTCGCTTGTGCATCAAGCACAACCATCCGGGCGGCATC- 105
                      ** * * ****  * *    *   * **  ****  * ** *  *    * **   ** 

consensus_401#0      TACGTGATCGAGTTCCACTTCGACCCGAACCCGTACTTCAAGGACACGGTGCTGACGAAG 538
consensus_401#1      -ACTTGGTCCA--TCCACTGCTGCCCAGATTCCTGCCTCAGCTTCAT------------- 149
                      ** ** ** *  ****** *  ***  *  * * * ***    **              

consensus_401#0      AAGTACTTCCTGCG 552
consensus_401#1      --------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)