These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 671 fasta sequence [CGTCCCTTCCGGGGAAACGCGCACGTGGTTTACAATGGGTCTTTCTACTATAACGAGCGTAACTCGCCCCGCATCATCAAGTACGATCTGAACGTGGAACGACAGACGGCAATGAACGAGCTGGAGGGTGTCACCACGAACGGTTCCAATTATCTGTACACTACCGAAATTAATTACATGGACTTCAACGTGGACGACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAACACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAGCGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGATTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGACCTCTACCACAGCAAGCTGCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGACCACCGTGGGGTACAATTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTACCCGATACGGTACCACGAGATAGGCTACAATACGACAGCCACCGAGAAGGCGGACGACGGTTTGAACCCGCAGATGCAGACCGGATACGACATTTACAACGATCACGACGCCGAAACGGAGGATGTACGCTAATGCGGCCA] [+] EMBL BX605388 [CGTCCCTTCCGGGGAAACGCGCACGTGGTTTACAATGGGTCTTTCTACTATAACGAGCGTAACTCGCCCCGCATCATCAAGTACGATCTGAACGTGGAACGACAGACGGCAATGAACGAGCTGGAGGGTGTCACCACGAACGGTTCCAATTATCTGTACACTA ] [+] EMBL BX602617 [ GGCAATGAACGAGCTGGAGGGTGTCACCACGAACGGTTCCAATTATCTGTACACTACCGAAATTAATTACATGGACTTCAACGTGGACGACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAACACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAGCGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGATTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGACCTCTACCACAGCAAGCTGCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGACCACCGTGGGGTACAATTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTACCCGATACGGTACCACGAGATAGGCTACAATACGACAGCCACCGAGAAGGCGGACGACGGTTTGAACCCGCAGATGCAGACCGGATACGACATTTACAACGATCACGACGCCGAAACGGAGGATGTACGCTAATGCGGCCA] consensusID : consensus_4010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [TCGCCNGAGGTTNACATGGACTTCAACGTGGACGCACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAACACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAGCGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGATTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGAACTCTAACACAGCAAGCTGCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGACACCGTGGGGTACAATTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTAACCGATACGGTACCACGAGATAGGCTACAATACGACAGGCAACGAGAAGGCGGACGACGGTTTGAACCCGC] [+] EMBL AL929758 [TCGCCNGAGGTTNACATGGACTTCAACGTGGACGCACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAACACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAGCGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGATTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGAACTCTAACACAGCAAGCTGCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGACACCGTGGGGTACAATTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTAACCGATACGGTACCACGAGATAGGCTACAATACGACAGGCAACGAGAAGGCGGACGACGGTTTGAACCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4010#0 CGTCCCTTCCGGGGAAACGCGCACGTGGTTTACAATGGGTCTTTCTACTATAACGAGCGT 60 consensus_4010#1 ------------------------------------------------------------ consensus_4010#0 AACTCGCCCCGCATCATCAAGTACGATCTGAACGTGGAACGACAGACGGCAATGAACGAG 120 consensus_4010#1 ------------------------------------------------------------ consensus_4010#0 CTGGAGGGTGTCACCACGAACGGTTCCAATTATCTGTACACTACCGAAATTAATTACATG 180 consensus_4010#1 ----------------------------------------TCGCCNGAGGT--TNACATG 18 ** * * * ***** consensus_4010#0 GACTTCAACGTGGACG-ACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAA 239 consensus_4010#1 GACTTCAACGTGGACGCACAATGGACTGTGGGTAATTTACGGGACGCCCGATTCGAACAA 78 **************** ******************************************* consensus_4010#0 CACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAG 299 consensus_4010#1 CACAATGGTTGTCAAGCTCAACGAAAACAATCTCACGGTACAGTACGGGTGGAACATTAG 138 ************************************************************ consensus_4010#0 CGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGA 359 consensus_4010#1 CGTAAATCATCACAAGGTGGGCGAAATGTTCATCGTGTGCGGTGTCCTGTACGCGATCGA 198 ************************************************************ consensus_4010#0 TTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGACCTCTACCACAGCAAGCT 419 consensus_4010#1 TTCCGTCACGGAGCGGAACACCAAGATCCGGCTGGCGCTCGAACTCTAACACAGCAAGCT 258 ****************************************** ***** *********** consensus_4010#0 GCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGACCACCGTGGGGTACAA 479 consensus_4010#1 GCTGGACGTGAGCCTTGCCTTTACGAACCCATTCCGCAAGACGAC-ACCGTGGGGTACAA 317 ********************************************* ************** consensus_4010#0 TTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTACCCGATACG 539 consensus_4010#1 TTTCAAAAACAAGGAACTGTACACATGGGACCGGGGCAATCAGTTGACCTAACCGATACG 377 *************************************************** ******** consensus_4010#0 GTACCACGAGATAGGCTACAATACGACAGCCACCGAGAAGGCGGACGACGGTTTGAACCC 599 consensus_4010#1 GTACCACGAGATAGGCTACAATACGACAGGCAACGAGAAGGCGGACGACGGTTTGAACCC 437 ***************************** ** *************************** consensus_4010#0 GCAGATGCAGACCGGATACGACATTTACAACGATCACGACGCCGAAACGGAGGATGTACG 659 consensus_4010#1 GC---------------------------------------------------------- 439 ** consensus_4010#0 CTAATGCGGCCA 671 consensus_4010#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||