These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1185 fasta sequence [GAGGTTATACCGTGGGCGGTGTTTACAAGTGCATTTGTTTATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGAGCACCACAAAGTGGNACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTGCAGTGTGTCAGTGCACATTTGGNCCGGGTGACGATAATACGTATAAAANCCGCGTGGTTCGCTATCTCAACAGCAACAAGNCGTNTATACGCAACAATATCGTACTATAATACCTACTACAATGGGAGACAATTTAGCATTNTTATAAAACGATATTTNTAGTNGTAGTTGCATAACTTNAAAATACTACCTCCGGATAGTAATTAANATAACTACACTCTATTATACGTAGATAGTATAATTGGGAGTNGGGGGTTAGGNGGTTACAACCACTGNCNTNGTNNAGACCCAGCGTACTATTAAAAGACTNGCGTAGTATAAAAAGTAAACGTTATTGTACCTCCTTGNGTNNGTGGTTNCCCGTAAGCAAACATCTAACAAGATTGAATATTGTATACTAGTATATCAGTATAATACAGGCTCTATTTTNGTCATAATATTTCTAGTCNTATAGATAATATCNGCNAATTNTCTAGTNTACTTGTNGTATTGTTTTCATCGNCAAAAGTACAACGGGTGCGCTTGTAGNTGTTTACCCCGGGGAAGNGTACAGACTCCCCCGGNTGTTAACATGTTCTNCAGTATGACCATACTCAACGGGCAACNAACAACAATTCTCTCGNCAANTAATNAGTGTCTACCCTTTANATGATATAACTAGACNGTANATCCNTATTAACGGATGANAAAANCAAGAAGTTGGCNATNAAAAGCGGTGGTAGAGANAATTCTAGCTNCACNCAAAAAACAACCCCGCCCCCAANAACTNAGANCTCATGGATGNCANNCCGCTTTGAGCCNANTNCCAACGNGTAANGAAGCAAAAAACCCCCGTNAGGATTNCTGCTGCGNCACNTGTTATCCACGGTTNTTCATAAACCTATTGGNTACGGACGAGCATCNATCATATCAAGTCTCAATGGGAGCGCNNATTATGGATGTACGACCAACAAAGGGACGGTGGTAGGAAATTACANCCACAACACAAAAAGTACCCGGGGCTAACTTAGAACNCAAAACAGGTTTGGCGATACCAAT] [+] EMBL AL929801 [GAGGTTATACCGTGGGCGGTGTTTACAAGTGCATTTGTTTATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGAGCACCACAAAGTGGNACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTGCAGTGTGTCAGTGCACATTTGGNCCGGGTGACGATAATACGTATAAAANCCGCGTGGTTCGCTATCTCAACAGCAACAAGNCGTNTATACGCAACAATATCGTACTATAATACCTACTACAATGGGAGACAATTTAGCATTNTTATAAAACGATATTTNTAGTNGTAGTTGCATAACTTNAAAATACTACCTCCGGATAGTAATTAANATAACTACACTCTATTATACGTAGATAGTATAATTGGGAGTNGGGGGTTAGGNGGTTACAACCACTGNCNTNGTNNAGACCCAGCGTACTATTAAAAGACTNGCGTAGTATAAAAAGTAAACGTTATTGTACCTCCTTGNGTNNGTGGTTNCCCGTAAGCAAACATCTAACAAGATTGAATATTGTATACTAGTATATCAGTATAATACAGGCTCTATTTTNGTCATAATATTTCTAGTCNTATAGATAATATCNGCNAATTNTCTAGTNTACTTGTNGTATTGTTTTCATCGNCAAAAGTACAACGGGTGCGCTTGTAGNTGTTTACCCCGGGGAAGNGTACAGACTCCCCCGGNTGTTAACATGTTCTNCAGTATGACCATACTCAACGGGCAACNAACAACAATTCTCTCGNCAANTAATNAGTGTCTACCCTTTANATGATATAACTAGACNGTANATCCNTATTAACGGATGANAAAANCAAGAAGTTGGCNATNAAAAGCGGTGGTAGAGANAATTCTAGCTNCACNCAAAAAACAACCCCGCCCCCAANAACTNAGANCTCATGGATGNCANNCCGCTTTGAGCCNANTNCCAACGNGTAANGAAGCAAAAAACCCCCGTNAGGATTNCTGCTGCGNCACNTGTTATCCACGGTTNTTCATAAACCTATTGGNTACGGACGAGCATCNATCATATCAAGTCTCAATGGGAGCGCNNATTATGGATGTACGACCAACAAAGGGACGGTGGTAGGAAATTACANCCACAACACAAAAAGTACCCGGGGCTAACTTAGAACNCAAAACAGGTTTGGCGATACCAAT] consensusID : consensus_4012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 542 fasta sequence [AATGGTTTAACAATTGTATATTGTAGCGTATTGATTGCAACCGTGGCCGCTGTTTANAAGTGCAATTTGTTTCATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGAGCACAAAAAGTGGAACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTGCAGTGTGTCAGTGCAATTTGGAAAGGGTGAGATAATCGTTTTACCGCGTGTTCGCTTCTCAAAGCAATGCGTTTATCCACCAATTCGTACTATTATCCTCTTTGGAGACAATTAGCTTTTATAAACGATTTTTAGTGTGTGCATACTTAAATCTCCTCGATGTTT-TTATTCTCACTCTTTATCGTGTGTTTTGGGTGGGTGGGTACACCCGCTGCGCCCGCTCTTTAAAGACTGCTGTTTTGTTTCGTTTGTCCTCTGGGGGGTTCCGTAGCAACTCTACAGA-TG-ATGATTGTTACTGTTTGTTAATCGCTTTTTTTCGTATATTATCTGNTCTATGTACNNTNAGCATTNCTGGTTNTCTGT] [+] EMBL BX627013 [AATGGTTTAACAATTGTATATTGTAGCGTATTGATTGCAACCGTGGCCGCTGTTTANAAGTGCAATTTGTTTCATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGAGCACAAAAAGTGGAACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTGCAGTGTGTCAGTGCAATTTGGAAAGGGTGAGATAATCGTTTTACCGCGTGTTCGCTTCTCAAAGCAATGCGTTTATCCACCAATTCGTACTATTATCCTCTTTGGAGACAATTAGCTTTTATAAACGATTTTTAGTGTGTGCATACTTAAATCTCCTCGATGTTT TTATTCTCACTCTTTATCGTGTGTTTTGGGTGGGTGGGTACACCCGCTGCGCCCGCTCTTTAAAGACTGCTGTTTTGTTTCGTTTGTCCTCTGGGGGGTTCCGTAGCAACTCTACAGA TG ATGATTGTTACTGTTTGTTAATCGCTTTTT ] [+] EMBL AL933753 [ cgaggaTGC ACCGTGGCCGCTGTTTAGAAGTGCAATTTGTTTCATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGAGCACAAAAAGTGGAACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTGCAGTGTGTCAGTGCAATTTGGAAAGGGTGAGATAATCGTTTTACCGCGTGTTCGCTTCTCAAAGCAATGCGTTTATCCACCAATTCGTACTATTATCCTCTTTGGAGACAATTAGCTTTTATAAACGATTTTTAGTGTGTGCATACTTAAATCTCCTCGATGTTTATTATTCTCACTCTTTATCGTGTGTTTTGGGTGGGTGGGTACACCCGCTGCGCCCGCTCTTTAAAGACTGCTGTTTTGTTTCGTTTGTCCTCTGGGGGGTTCCGTAGCAACTCTACAGACTGCATGATTGTTACTGTTTGTTAATCGCTTCTTTTCGTATATTATCTGNTCTATGTACNNTNAGCATTNCTGGTTNTCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4012#0 ------------------------------GAGGTTATA-CCGTGGGCGGTGTTTACAAG 29 consensus_4012#1 AATGGTTTAACAATTGTATATTGTAGCGTATTGATTGCAACCGTGGCCGCTGTTTANAAG 60 * ** * ****** ** ****** *** consensus_4012#0 TGCA-TTTGTTT-ATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGA 87 consensus_4012#1 TGCAATTTGTTTCATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGA 120 **** ******* *********************************************** consensus_4012#0 GCACCACAAAGTGGNACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTG 147 consensus_4012#1 GCAC-AAAAAGTGGAACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTG 179 **** * ******* ********************************************* consensus_4012#0 CAGTGTGTCAGTGCACATTTGGNCCGGGTGACGATAATACGTATAAAANCCGCGTGGTTC 207 consensus_4012#1 CAGTGTGTCAGTGCA-ATTTGGAAAGGGTGA-GATAAT-CGTTT---TACCGCGTG-TTC 232 *************** ****** ****** ****** *** * ******* *** consensus_4012#0 GCTATCTCAACAGCAACAAGNCGTNTATACGCAACAATATCGTACTATAATACCTACTAC 267 consensus_4012#1 GCT-TCTCAA----AGCAATGCGTTTATCCAC--CAAT-TCGTACTATTATCCTCTTT-- 282 *** ****** * *** *** *** * * **** ********* ** * * consensus_4012#0 AATGGGAGACAATTTAGCATTNTTATAAAACGATATTTNTAGTNGTAGTTGCATAACTTN 327 consensus_4012#1 ----GGAGACAATT-AGC--TTTTATAAA-CGATTTTTAGTGTG-----TGCATA-CTTA 328 ********** *** * ******* **** *** ** ****** *** consensus_4012#0 AAAATACTACCTCCGGATAGTAATTAANATAACTACACTCTATTATACGTAGATAGTATA 387 consensus_4012#1 AAT------CTCCTCGATG----TTTTTATTCTCACTCTTTATCGTGTGT---------- 368 ** * * *** ** ** ** ** *** * ** consensus_4012#0 ATTGGGAGTNGGGGGTTAGGNGGTTACAACCACTGNCNTNGTNNAGACCCAGCGTACTAT 447 consensus_4012#1 TTTGGG----------TGGGTGGGTACACCCGCTGCGCCCGCTC---------------T 403 ***** * ** ** **** ** *** * * consensus_4012#0 TAAAAGACTNGCGTAGTATAAAAAGTAAACGTTATTGTACCTCCTTGNGTNNGTGGTTNC 507 consensus_4012#1 TTAAAGACTGCTGTTTTGT------------TTCGTTTGTCCTCTGGGGGGTTCCGTAGC 451 * ******* ** * * ** * * * ** * * ** * consensus_4012#0 CCGTAAGCAAACATCTAACAAGATTGAATATTGTATACTAGTATATCAGTATAATACAGG 567 consensus_4012#1 AACTCTACAGATGATGATTGTTACTGTTTGTTAATCGCT--TTTTTTCGTATATTATCTG 509 * ** * * * ** * ** ** * * * ***** ** * consensus_4012#0 CTCTATTTTNGTCATAATATTTCTAGTCNTATAGATAATATCNGCNAATTNTCTAGTNTA 627 consensus_4012#1 NTCTATGTACNNTN-AGCATTNCTGGTTNTCTGT-------------------------- 542 ***** * * *** ** ** ** * consensus_4012#0 CTTGTNGTATTGTTTTCATCGNCAAAAGTACAACGGGTGCGCTTGTAGNTGTTTACCCCG 687 consensus_4012#1 ------------------------------------------------------------ consensus_4012#0 GGGAAGNGTACAGACTCCCCCGGNTGTTAACATGTTCTNCAGTATGACCATACTCAACGG 747 consensus_4012#1 ------------------------------------------------------------ consensus_4012#0 GCAACNAACAACAATTCTCTCGNCAANTAATNAGTGTCTACCCTTTANATGATATAACTA 807 consensus_4012#1 ------------------------------------------------------------ consensus_4012#0 GACNGTANATCCNTATTAACGGATGANAAAANCAAGAAGTTGGCNATNAAAAGCGGTGGT 867 consensus_4012#1 ------------------------------------------------------------ consensus_4012#0 AGAGANAATTCTAGCTNCACNCAAAAAACAACCCCGCCCCCAANAACTNAGANCTCATGG 927 consensus_4012#1 ------------------------------------------------------------ consensus_4012#0 ATGNCANNCCGCTTTGAGCCNANTNCCAACGNGTAANGAAGCAAAAAACCCCCGTNAGGA 987 consensus_4012#1 ------------------------------------------------------------ consensus_4012#0 TTNCTGCTGCGNCACNTGTTATCCACGGTTNTTCATAAACCTATTGGNTACGGACGAGCA 1047 consensus_4012#1 ------------------------------------------------------------ consensus_4012#0 TCNATCATATCAAGTCTCAATGGGAGCGCNNATTATGGATGTACGACCAACAAAGGGACG 1107 consensus_4012#1 ------------------------------------------------------------ consensus_4012#0 GTGGTAGGAAATTACANCCACAACACAAAAAGTACCCGGGGCTAACTTAGAACNCAAAAC 1167 consensus_4012#1 ------------------------------------------------------------ consensus_4012#0 AGGTTTGGCGATACCAAT 1185 consensus_4012#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||