These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4018#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 956 fasta sequence [CCGAGGTTATGTTTAAGTCTTTTATTCGACTCCGTGTTAGTCACTTCTTAGCCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTATTGATCCAGCAAGCAATATGTATGGTAGGCAACGAATCAAAATCGCTACAGCATTATCTATCTAGGTGGTTACAATGCTATGCTATATGGACTACGCAACAACGCCCGAAATTAGCTGGTAGGCTAACCGATATAGAACCATATCGCTCAACGGAGTGACGCTACTTAAATACGTTTCATATACTGGCGAACATAGCAGAGAAACCATTTATTTACGCCGACACACTATGTACATGGCACAGACAACGGANCATATCTACTATATAGAAAATGGANAACATNAACNTNTATCTCGCACACGCGACACGTTCCTAGTTATTCTTATGGCANATAAACAACATGCTGCCAAAAACTATTCAACATTTCCTACCCACTTTAAGTACATAGATAAATATCAGTATAACAACCGTAGNCTCTCTTGTATCATCTGGCATAACTTCANGGTTTGGANAATNGGCCCTAGCCCATTCACACCTGCGCNNTCACCCAAGCAAAACGCCTATNTCCTACATTGGATTTCTAATTCACTTTCGTCCCTTTCCAACNTTCCCGTTAAACACACTTGCGAANACAACAAGCGCNAAAAAGCCAACACTTNGCATTTCNGGCTGNCACAATTNCCCCCCCGTATGTCCAACCAATAACGCCNNAGGGGACAGTANAAGTTACAAAACTTACTNCTAGTAAACCCCTTAAACACCGTCTCGGCGACTNAACTTAAAANCGGCATCAGGGGGGCTCTNGCGCNTTGGCAAATTTAGGCGAGCTGCTTAGGACTACCGAAGTTAACGGCANACCAAGGGGGGCCCGATCGCGCTCTCTGNGNGNCTGGTGCGTACCACCTTAAATTTCCCTCCGNTTATG] [+] EMBL AL929859 [CCGAGGTTATGTTTAAGTCTTTTATTCGACTCCGTGTTAGTCACTTCTTAGCCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTATTGATCCAGCAAGCAATATGTATGGTAGGCAACGAATCAAAATCGCTACAGCATTATCTATCTAGGTGGTTACAATGCTATGCTATATGGACTACGCAACAACGCCCGAAATTAGCTGGTAGGCTAACCGATATAGAACCATATCGCTCAACGGAGTGACGCTACTTAAATACGTTTCATATACTGGCGAACATAGCAGAGAAACCATTTATTTACGCCGACACACTATGTACATGGCACAGACAACGGANCATATCTACTATATAGAAAATGGANAACATNAACNTNTATCTCGCACACGCGACACGTTCCTAGTTATTCTTATGGCANATAAACAACATGCTGCCAAAAACTATTCAACATTTCCTACCCACTTTAAGTACATAGATAAATATCAGTATAACAACCGTAGNCTCTCTTGTATCATCTGGCATAACTTCANGGTTTGGANAATNGGCCCTAGCCCATTCACACCTGCGCNNTCACCCAAGCAAAACGCCTATNTCCTACATTGGATTTCTAATTCACTTTCGTCCCTTTCCAACNTTCCCGTTAAACACACTTGCGAANACAACAAGCGCNAAAAAGCCAACACTTNGCATTTCNGGCTGNCACAATTNCCCCCCCGTATGTCCAACCAATAACGCCNNAGGGGACAGTANAAGTTACAAAACTTACTNCTAGTAAACCCCTTAAACACCGTCTCGGCGACTNAACTTAAAANCGGCATCAGGGGGGCTCTNGCGCNTTGGCAAATTTAGGCGAGCTGCTTAGGACTACCGAAGTTAACGGCANACCAAGGGGGGCCCGATCGCGCTCTCTGNGNGNCTGGTGCGTACCACCTTAAATTTCCCTCCGNTTATG] consensusID : consensus_4018#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence [CCGGTCGGCGTAAATCATATATTCAATATTTAATTCACCCAAGGCTTATATTTATAGCTGATAGCTGGTTAATATTCGTGTTTAAGTCTTTTATTCGATTCCGTGTGTGTCACTTCTTAGCCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTTTGATCCAGCAAGCAATTGTTGGTGGCAACGAATCAAAATCGCTCAGCATTTCTTCTGGTGGTTACAATGCTATGCTTATGGACTCGAAAACGCCCGAAATTGCTGGTGGCTTCCGATTGAACCATATCGTCAACGGAGTGACGCTCTTAAATCGTTTCATATACTGGCGAACATGCAGAGAAACCATTTTATTTAGCGAAATATGTTTGGACAGAAACGACATTTACTTTGAAATGAAAATAACTTTTGAAGGAAGTCCTGTTCTTGCAATACAATGCTGTAAAACTTCAAATTCTCCATTAATCATGATAATCGTTACAACTGCTTTTGTTCATCGGATATCAGTTGAAATGCCTGCATCAATGGATCACCAGAAACGCTTTCTACATGATTCTATTATTTCTCATCTAAATGAAAACAACATGTTGGATCCTTTAAACTGTTATAATTTTACTAATGATATAGGACAAGTAGTTCCGGTCGCTGCAACTGTCACCAATACAAGTAATAATATGCAATGCCAAATTGCAATCGCAT] [+] EMBL BM607325 [CCGGTCGGCGTAAATCATATATTCAATATTTAATTCACCCAAGGCTTATATTTATAGCTGATAGCTGGTTAATATTCGTGTTTAAGTCTTTTATTCGATTCCGTGTGTGTCACTTCTTAGCCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTTTGATCCAGCAAGCAATTGTTGGTGGCAACGAATCAAAATCGCTCAGCATTTCTTCTGGTGGTTACAATGCTATGCTTATGGACTCGAAAACGCCCGAAATTGCTGGTGGCTTCCGATTGAACCATATCGTCAACGGAGTGACGCTCTTAAATCGTTTCATATACTGGCGAACATGCAGAGAAACCATTTTATTTAGCGAAATATGTTTGGACAGAAACGACATTTACTTTGAAATGAAAATAACTTTTGAAGGAAGTCCTGTTCTTGCAATACAATGCTGTAAAACTTCAAATTCTCCATTAATCATGATAATCGTTACAACTGCTTTTGTTCATCGGATATCAGTTGAAATGCCTGCATCAATGGATCACCAGAAACGCTTTCTACATGATTCTATTATTTCTCATCTAAATGAAAACAACATGTTGGATCCTTTAAACTGTTATAATTTTACTAATGATATAGGACAAGTAGTTCCGGTCGCTGCAACTGTCACCAATACAAGTAATAATATGCAATGCCAAATTGCAATCGCAT] [+] EMBL BM589541 [ ccgCCCAAGGCTTATATTTATAGCTGATAGCTGGTTAATATTCGTGTTTAAGTCTTTTATTCGATTCCGTGTGTGTCACTTCTTAGCCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTTTGATCCAGCAAGCAATTGTTGGTGGCAACGAATCAAAATCGCTCAGCATTTCTTCTGGTGGTTACAATGCTATGCTTATGGACTCGAAAACGCCCGAAATTGCTGGTGGCTTCCGATTGAACCATATCGTCAACGGAGTGACGCTCTTAAATCGTTTCATATACTGGCGAACATGCAGAGAAACCATTTTATTTAGCGAAATATGTTTGGACAGAAACGACATTTACTTTGAAATGAAAATAACTTTTGAAGGAAGTCCTGTTCTTGCAATACAATGCTGTAAAACTTCAAATTCTCCATTAATCATGATAATCGTTACAACTGCTTTTGTTCATCGGATATCAGTTGAAATGCCTGCATCAATGGATCACCAGAAACGCTTTCTACATGATTCTATTATTTCTCATCTAAATGAAAACAACATGTTGGATCCTTTAAACTGTTATAATTTTACTAATGATATAGGACAAGTAGTTCCGGTCGCTGCAACTGTCACCAATACAAGTAATAATATGCAATGCCAAATTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4018#0 ------------------------------------------------------------ consensus_4018#1 CCGGTCGGCGTAAATCATATATTCAATATTTAATTCACCCAAGGCTTATATTTATAGCTG 60 consensus_4018#0 --------CCGAGGTT-ATGTTTAAGTCTTTTATTCGACTCCGTGTTAGTCACTTCTTAG 51 consensus_4018#1 ATAGCTGGTTAATATTCGTGTTTAAGTCTTTTATTCGATTCCGTGTGTGTCACTTCTTAG 120 * ** ******************** ******* ************ consensus_4018#0 CCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCTATTGATCCAGCAAGCAATAT 111 consensus_4018#1 CCAGCATATTAAAATGTCTGAAATGTACAGAGAAGTTCCT-TTGATCCAGCAAGCAAT-T 178 **************************************** ***************** * consensus_4018#0 GTATGGTAGGCAACGAATCAAAATCGCTACAGCATTATCTATCTAGGTGGTTACAATGCT 171 consensus_4018#1 GT-TGGT-GGCAACGAATCAAAATCGCT-CAGCATTTCTTCT---GGTGGTTACAATGCT 232 ** **** ******************** ******* * * *************** consensus_4018#0 ATGCTATATGGACTACGCAACAACGCCCGAAATTAGCTGGTAGGCTAACCGATATAGAAC 231 consensus_4018#1 ATGCT-TATGGACT---CGAAAACGCCCGAAATT-GCTGGTGGCTT--CCGATT--GAAC 283 ***** ******** * * ************* ****** * * ***** **** consensus_4018#0 CATATCGCTCAACGGAGTGACGCTACTTAAATACGTTTCATATACTGGCGAACATAGCAG 291 consensus_4018#1 CATATCG-TCAACGGAGTGACGCT-CTTAAAT-CGTTTCATATACTGGCGAACAT-GCAG 339 ******* **************** ******* ********************** **** consensus_4018#0 AGAAACCATTTATTTACGCCGACACACTATGTACATGGCACAGACAACGGANCATATCTA 351 consensus_4018#1 AGAAACCATTTTATT----TAGCGAAATATGT---TTGGACAGA-----AACGACATTTA 387 *********** ** * * ***** * * ***** * * ** ** consensus_4018#0 CTATATAGAAAATGGANAACATNAACNTNTATCTCGCACACGCGACACGTTCCTAGTTAT 411 consensus_4018#1 CTTTG----AAATGAAAA----TAACTTTT-----------GAAGGAAGTCC-----TGT 423 ** * ***** * * *** * * * * ** * * * consensus_4018#0 TCTTATGGCANATAAACAACATGCTGCCAAAAACTATTCAACATTTCCTACCCACTTTAA 471 consensus_4018#1 TCTTGCAATACA--------ATGCTGT--AAAACT--TCAA-ATTCTCCA------TTAA 464 **** * * ****** ****** **** *** * * **** consensus_4018#0 GTACATAGATAAATATCAGTATAACAACCGTAGNCTCTCTTGTATCATCTGGCATAACTT 531 consensus_4018#1 TCAT---GATA---ATCGTTACAACTGCTTTTGTTCATCGGATATCAGTTGAAATGCCTG 518 * **** *** ** *** * * * ** ***** ** ** ** consensus_4018#0 CANGGTTTGGANAATNGGCCCTAGCCCATTCACACCTGCGCNNTCACCCAAGCAAAACGC 591 consensus_4018#1 CATCAAT-GGATCACCAGAAACGCTTTCTACATGATTCTATTATTTCTCAT-CTAAATGA 576 ** * *** * * * ** * * * ** * *** * consensus_4018#0 CTATNTCCTACATTGGATTTCTAATTCACTTTCGTCCCTTTCCAACNTTCCCGTTAAACA 651 consensus_4018#1 AAACAAC--ATGTTGGATCCTTTA--AACTGTTATAATTTTACTAATGATATAGGACAAG 632 * * * ****** * * *** * * *** * * * * consensus_4018#0 CACTTGCGAANACAACAAGCGCNAAAAAGCCAACACTTNGCATTTCNGGCTGNCACAATT 711 consensus_4018#1 TAGTTCCGGTCGCTGCAACTGTCACCAAT---ACAAGTAATAATATGCAATGCCA-AATT 688 * ** ** * *** * * ** *** * * * ** ** **** consensus_4018#0 NCCCCCCCGTATGTCCAACCAATAACGCCNNAGGGGACAGTANAAGTTACAAAACTTACT 771 consensus_4018#1 GCAATCGCAT-------------------------------------------------- 698 * * * * consensus_4018#0 NCTAGTAAACCCCTTAAACACCGTCTCGGCGACTNAACTTAAAANCGGCATCAGGGGGGC 831 consensus_4018#1 ------------------------------------------------------------ consensus_4018#0 TCTNGCGCNTTGGCAAATTTAGGCGAGCTGCTTAGGACTACCGAAGTTAACGGCANACCA 891 consensus_4018#1 ------------------------------------------------------------ consensus_4018#0 AGGGGGGCCCGATCGCGCTCTCTGNGNGNCTGGTGCGTACCACCTTAAATTTCCCTCCGN 951 consensus_4018#1 ------------------------------------------------------------ consensus_4018#0 TTATG 956 consensus_4018#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||