These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [CCCTTTGGATCAGCTGTTGTCACCATTGTTTTGCTTTGTGCCTTTCTTTATGATGTACGGTTTAGTTAGTTTTATGATGCAATTTCCCAACCTCCCCCTCAATGCACACACACAGACACAAACACGCGCAAATGGTGTTGCGTATCGTATCGTGGCCGGCGTTTTGTACGTGCAGCGATTCTCTAATTGATCGTTCGATTAAAGCATCAAATAATAAAGGCAGGAACCAGCTACCACCTGTCCCAAGTTGACCTATATTTAAATATGGAAGGAACCGAGGTGGTTCGTTGACACACTGTTCACATAACACGCACATGAAATCGATATTACGATCACTTTTTTGTCGGTACGATTTTCGTTCTCCGGTCGCGGATTGGCTGTGATTTCAAAGTGTCCTGTGTCCTTCATCTTACGCCGTTTACTACTACGCTTACACTGCCCGGCAAGTGATACAGGCTGGTGTGAGAGTCGAAACCCAATAGGTATTATGATACATAGCGTGTGCGTTGCATAGCTAGTGTAAGAAGAAAAGGTAGACAATTTTATTAGCTGTTAAGGTATGCGACCGAGTGATATGAAGCAAACACCACCGCTACTGCTGTTGGCAGGTTTTAAGTGAATGTGAAAACGAAACGGTCTCCAATTGAAGTGGAACCCACCGACGAAGCTAGACGGTTTTACTAGCCCGCACGAACATG] [+] EMBL BX602474 [CCCTTTGGATCAGCTGTTGTCACCATTGTTTTGCTTTGTGCCTTTCTTTATGATGTACGGTTTAGTTAGTTTTATGATGCAATTTCCCAACCTCCCCCTCAATGCACACACACAGACACAAACACGCGCAAATGGTGTTGCGTATCGTATCGTGGCCGGCGTTTTGTACGTGCAGCGATTCTCTAATTGATCGTTCGATTAAAGCATCAAATAATAAAGGCAGGAACCAGCTACCACCTGTCCCAAGTTGACCTATATTTAAATATGGAAGGAACCGAGGTGGTTCGTTGACACACTGTTCACATAACACGCACATGAAATCGATATTACGATCACTTTTTTGTCGGTACGATTTTCGTTCTCCGGTCGCGGATTGGCTGTGATTTCAAAGTGTCCTGTGTCCTTCATCTTACGCCGTTTACTACTACGCTTACACTGCCCGGCAAGTGATACAGGCTGGTGTGAGAGTCGAAACCCAATAGGTATTATGATACATAGCGTGTGCGTTGCATAGCTAGTGTAAGAAGAAAAGGTAGACAATTTTATTAGCTGTTAAGGTATGCGACCGAGTGATATGAAGCAAACACCACCGCTACTGCTGTTGGCAGGTTTTAAGTGAATGTGAAAACGAAACGGTCTCCAATTGAAGTGGAACCCACCGACGAAGCTAGACGGTTTTACTAGCCCGCACGAACATG] consensusID : consensus_4021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 621 fasta sequence [CCCACGCGTCCGGTGAATGTGAAAACGAAACGGTCTCCAATTGAAGTGGAACCACCGACCGAAGTTAGACGGTTTTACTAGCCCGCACGAACATGTTGTGTTTGCTCCGTTTCATAACGAACCGCTTCACTAGTATCGTAAAGCCCATTACGAAATATGCTTCATAACTCAGCCACCAGAACTAGAGAGACGCACTACACACGTTTAAAGTTCGAGATTTGGCCCACCTGGCCCGAAACTGCTGCACTCTTTTATCCACTAGCTGATCTC----ATGTTTCCTTTTCCATTGGATTTTGAAAGACGTGAGTTTGTAGTGAAGATTGAAAGCATACTGACCGTACCGAAACCGGTTTCGGGCTGCATTGTGCGGGACCGGAACTGTTGGCATTGAAAACGATCATCCTTGTCCGTGGAATGCGTCCGTGGAATGGGAAAGATAATGGGAAGCGTAGGCAAAGAGGACCCGCGTGG-AGGCGAGGATGCAATCTGTAGGGTGCAGAGGGTGACATTGATCAGTGTGTGCAGGGTAATGCACTATGCAGTTAAGTGCAGTGAACGCAATAGCCAAGGTTATAGCGAATTTAAATGAAGTGTATGTAATGAATAAAATGATTTTTTTTAT] [+] EMBL BM596763 [CCCACGCGTCCGGTGAATGTGAAAACGAAACGGTCTCCAATTGAAGTGGAACCACCGACCGAAGTTAGACGGTTTTACTAGCCCGCACGAACATGTTGTGTTTGCTCCGTTTCATAACGAACCGCTTCACTAGTATCGTAAAGCCCATTACGAAATATGCTTCATAACTCAGCCACCAGAACTAGAGAGACGCACTACACACGTTTAAAGTTCGAGATTTGGCCCACCTGGCCCGAAACTGCTGCACTCTTTTATCCACTAGCTGATCTC ATGTTTCCTTTTCCATTGGATTTTGAAAGACGTGAGTTTGTAGTGAAGATTGAAAGCATACTGACCGTACCGAAACCGGTTTCGGGCTGCATTGTGCGGGACCGGAACTGTTGGCATTGAAAACGATCATCCTTGTCCGTGGAATGCGTCCGTGGAATGGGAAAGATAATGGGAAGCGTAGGCAAAGAGGACCCGCGTGG AGGCGAGGATGCAATCTGTAGGGTGCAGAGGGTGACATTGATCAGTGTGTGCAGGGT ] [+] EMBL BM643624 [ ccgCTCCAATTGAAGTGGAACCA GAC AGTTAGACGGTTTTACTAGTCCGCACGAACATGTTGTGTTTGCTCCGTTTCATAACGAACCGCTCCACTAGTATCGTAAAGCCCATTACGAAATATGCTTCATAACTCGGCCACCAGAACTAGAGAGACGCGCTAGACACGTTTAAAGTTCGAGA TCGCCCGCCTGGCCCGAAACTGCTGCACTCTTTTATCCACTAGCTGATCTCATGGATGTTTCCTTTTCCATTGGATTTTGAACGACGTGAGTTTGTAGTGAAGATATAAAGCATGCTGACCGTACCGAAACCGGTTTTGGGCTGCATTGTGAGGGACCGGAAATGTTGGCATTGAAAACGATCATCCTTGTCCGTGGAATGCGTCCGTGGAATGGGAAAGATAATGGGAAGCGTAGGCAAAGAGGACCCGCGTGGAAGGCGTGGATGCAACCTGTAGGGTGCAGAGGGTGGCATTGATCAGTGTGTGCAGGGTAATGCACTATGCAGTTAAGTGCAGTGAACGCAATAGCCAAGGTTATAGCGAATTTAAATGAAGTGTATGTAATGAATAAAATGATTTTTTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4021#0 CCCTTTGGATCAGCTGTTGTCACCATTGTTTTGCTTTGTGCCTTTCTTTATGATGTACGG 60 consensus_4021#1 ----------------------------------CCCACGCGTCCGGTGA--ATGTGAAA 24 ** * * * **** consensus_4021#0 TTTAGTTAGTTTTATGATGCAATTTCCCAACCTCCCCCTCAATGCACACACACAGACACA 120 consensus_4021#1 ACGAAACGGTCTCCAATTGAAGTG---GAACCACCGACCGAAGTTAGACGGTTT--TACT 79 * ** * ** * * **** ** * ** * ** ** consensus_4021#0 AACACGCGCAAATGGTGTTGCGTATCGTATCGTGGCCGGCGTTTTGTACGTGCAGCGATT 180 consensus_4021#1 AGCCCGCACGAACA-TGTTGTGTTTGCTC----------CGTTTCATA-ACGAACCGCTT 127 * * *** * ** ***** ** * * ***** ** * * ** ** consensus_4021#0 CTCTAATTGATCGTTCGATTAAAGCATCAAATAATAAAGGCAGGAAC-CAGCTACCACCT 239 consensus_4021#1 CACTAGT--ATCGTAAAGCC----CATTACGAAATATGCTTCATAACTCAGCCACCAGAA 181 * *** * ***** *** * **** *** **** **** consensus_4021#0 GTCCCAAGTTGACCTATATTTAAATATGGAAGGA-ACCGAGGTGGTTCGTTGACACACTG 298 consensus_4021#1 CTAGAGAGACGCACTACACACGTTTAAAGTTCGAGATTTGGCCCACCTGGCCCGAAACTG 241 * ** * *** * ** * ** * * * * **** consensus_4021#0 TTCACATAACACGCACATGAAATCGATATTACGATCACTTTTTTGTCGG--TACGATTTT 356 consensus_4021#1 CTGCACTCTTTTATCCACTAGCT-GATCTCATGTTTCCTTTTCCATTGGATTTTGAAAGA 300 * * ** * * *** * * * * ***** * ** * ** consensus_4021#0 CGTTCTCCGGTCGCGGATTGGCTGTGATTTCAAAGTGTCCTGTGTCC---TTCATCTTAC 413 consensus_4021#1 CGTGAGTTTGTAGTGAAGATTGAAAGCATACTGACCGTACCGAAACCGGTTTCGGGCTGC 360 *** ** * * * * * * * ** * * ** *** * * consensus_4021#0 GCCGTTTACTACTACGCTTACACTGCCCGGCAAGTGATACAGGCTGGTGTGAGAGTCGAA 473 consensus_4021#1 ATTGTGCGGGACCGGAACTGT-TGGCATTGAAAACGAT-CATCCTTGTCCGTGGAATGCG 418 ** ** * ** * ** *** ** ** ** * * * consensus_4021#0 ACCC---AATAGGTATTATGATACATAGCGTGTGCGTTGCATAGCTAGTGTAAGAAGAAA 530 consensus_4021#1 TCCGTGGAATGGGAAAGATAATGGGAAGCGTAGGCAAAG-AGGACCCGCGT--GGAGGCG 475 ** *** ** * ** ** ***** ** * * * * ** * ** consensus_4021#0 AGGTAGACAATTTTATTAGCTGTTAAGGTATGCGACCGAGTGATATGAAGCAAACACCAC 590 consensus_4021#1 AGG-ATGCAATCT-GTAGGGTGCAGAGG-GTGACATTGATCAGTGTGTGCAGGGTAATGC 532 *** * **** * * * ** *** ** * ** * ** * * consensus_4021#0 CGCTACTGCTGTTGGCAGGTTTTAAGTGAATGTGAAAACGAAA-CGGTCTCCAATTGAAG 649 consensus_4021#1 -ACTA-TGCAGTT---AAGTGC--AGTGAACGCAATAGCCAAGGTTATAGCGAATTTAAA 585 *** *** *** * ** ****** * * * * ** * * **** ** consensus_4021#0 TGGAACCCACCGACGAAGCTAGACGGTTTTACTAGCCCGCACGAACATG 698 consensus_4021#1 TGAAGTGTATGTAATGAATAAAATGATTTTTTTTAT------------- 621 ** * * * * * * * **** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||