These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4041#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 962 fasta sequence [CCGCCCACGCGTCCGGCGCAAGCAGCGCCAGGCGGGCGAGCTGAAGGACGTGCCGGCCGTCTGCTCGGTCCTGTCGGCCGATGCGCCCCCGCCCTGCCCGCCCGACTGTCCACCGACACGGCTTACCCGCGAACAGCTCCAACCCCCGACGCCGTCCGTGTTTTTGGAGAACAAAAAGGACGCGTTCAGTCCGCAGCTGCAGGAGTTTTGCCTGAAGCATCCGATCGCGGTGGTGAGGCAGCTCGGTGCGGCCCTGAAGCTGGATTTGGGGCTGTTTTCGACCAAAACGCTTGTGGAGGCGAACCCGGACCACACGGTGGAGGTGCGGACGCAGGTACATCAGTCACCGGACGAGAACTGGGACGGAAACAAGAACTCGAAGGTGTGGGCTTGCATATCGCACCGATCGCACACCACCATCGCCAAGTACGCGCAGTACCAGGCGTCGAGCTTTTCGGACAAGATTAAGGAGGAGCGTGACAAGCTGGCCGGCATTTCGACCGCCTCCACCAACTCCGACTCCGACTCGAAGGATTCCATCTCGAACAGTGGCAGTGCGTGCGGCGGCGGCGGTGGCACGGGAGCGACCAGCGGTGGAGGAACCGGTACCGGTGGCGGTAACAGTTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAAAAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTGGAAGGCGCAGCTGCAGGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGCCAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACATGAAGGTGCCAGGCAGTAGGACGCCCGGTCACCAGGAGAACAACAACTTCTGCTCGATCAACATCAATATTGGGCCGGGCGATTGGTGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCGGC] [+] EMBL BM630258 [CCGCCCACGCGTCCGGCGCAAGCAGCGCCAGGCGGGCGAGCTGAAGGACGTGCCGGCCGTCTGCTCGGTCCTGTCGGCCGATGCGCCCCCGCCCTGCCCGCCCGACTGTCCACCGACACGGCTTACCCGCGAACAGCTCCAACCCCCGACGCCGTCCGTGTTTTTGGAGAACAAAAAGGACGCGTTCAGTCCGCAGCTGCAGGAGTTTTGCCTGAAGCATCCGATCGCGGTGGTGAGGCAGCTCGGTGCGGCCCTGAAGCTGGATTTGGGGCTGTTTTCGACCAAAACGCTTGTGGAGGCGAACCCGGACCACACGGTGGAGGTGCGGACGCAGGTACATCAGTCACCGGACGAGAACTGGGACGGAAACAAGAACTCGAAGGTGTGGGCTTGCATATCGCACCGATCGCACACCACCATCGCCAAGTACGCGCAGTACCAGGCGTCGAGCTTTTCGGACAAGATTAAGGAGGAGCGTGACAAGCTGGCCGGCATTTCGACCGCCTCCACCAACTCCGACTCCGACTCGAAGGATTCCATC ] [+] EMBL BM575383 [ CCGGACGAGAACTGGGACGGAAACAAGAACTCGAAGGTGTGGGCTTGCATATCGCACCGATCGCACACCACCATCGCCAAGTACGCGCAGTACCAGGCGTCGAGCTTTTCGGACAAGATTAAGGAGGAGCGTGACAAGCTGGCCGGCATTTCGACCGCCTCCACCAACTCCGACTCCGACTCGAAGGATTCCATCTCGAACAGTGGCAGTGCGTGCGGCGGCGGCGGTGGCACGGGAGCGACCAGCGGTGGAGGAACCGGTACCGGTGGCGGTAACAGTTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAAAAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTGGAAGGCGCAGCTGCAGGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGCCAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACATGAAGGTGCCAGGCAGTAGGACGCCCGGTCACCAGGAGAACAACAACTTCTGCTCGATCAACATCAATATTGGGCCGGGCGATTGGTGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCGGC] consensusID : consensus_4041#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTGCGTGCGGCGGCGGTGGTGGTACGGGAGCGACCAGTGGTGGTGGAACCGGTACCGGTGGCGGTAACAGCTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAAAAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTGGAAGGCGCAGCTGCAAGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGCCAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACATGAAGGTGCCGGGCAGTAGGACGCCCGGTCACCAGGAGAACAATAACTTCTGCTCGATCAACATCAATATTGGGCCGGGCGATTGTGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCGGCATCCAGGCGCTGTGCGAGAAGAATAACATCAACTATCTGCACGGGTCGTGGTGGCCGGCGCTCGAGGATCTGTACGCGGAGAACATACCGGTGTACCGGTTCACGCAACGGCCGGGCGATCTGGTGTGGGTTAATGCGGGATGTGTCCACTGGGTGCAGGCCATCGGCTGGTGTAA] [+] EMBL BM596844 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGCGTGCGGCGGCGGTGGTGGTACGGGAGCGACCAGTGGTGGTGGAACCGGTACCGGTGGCGGTAACAGCTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAAAAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTGGAAGGCGCAGCTGCAAGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGCCAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACATGAAGGTGCCGGGCAGTAGGACGCCCGGTCACCAGGAGAACAATAACTTCTGCTCGATCAACATCAATATTGGGCCGGGCGATTGTGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCGGCATCCAGGCGCTGTGCGAGAAGAATAACATCAACTATCTGCACGGGTCGTGGTGGCCGGCGCTCGAGGATCTGTACGCGGAGAACATACCGGTGTACCGGTTCACGCAACGGCCGGGCGATCTGGTGTGGGTTAATGCGGGATGTGTCCACTGGGTGCAGGCCATCGGCTGGTGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4041#0 CCGCCCACGCGTCCGGCGCAAGCAGCGCCAGGCGGGCGAGCTGAAGGACGTGCCGGCCGT 60 consensus_4041#1 ------------------------------------------------------------ consensus_4041#0 CTGCTCGGTCCTGTCGGCCGATGCGCCCCCGCCCTGCCCGCCCGACTGTCCACCGACACG 120 consensus_4041#1 ------------------------------------------------------------ consensus_4041#0 GCTTACCCGCGAACAGCTCCAACCCCCGACGCCGTCCGTGTTTTTGGAGAACAAAAAGGA 180 consensus_4041#1 ------------------------------------------------------------ consensus_4041#0 CGCGTTCAGTCCGCAGCTGCAGGAGTTTTGCCTGAAGCATCCGATCGCGGTGGTGAGGCA 240 consensus_4041#1 ------------------------------------------------------------ consensus_4041#0 GCTCGGTGCGGCCCTGAAGCTGGATTTGGGGCTGTTTTCGACCAAAACGCTTGTGGAGGC 300 consensus_4041#1 ------------------------------------------------------------ consensus_4041#0 GAACCCGGACCACACGGTGGAGGTGCGGACGCAGGTACATCAGTCACCGGACGAGAACTG 360 consensus_4041#1 ------------------------------------------------------------ consensus_4041#0 GGACGGAAACAAGAACTCGAAGGTGTGGGCTTGCATATCGCACCGATCGCACACCACCAT 420 consensus_4041#1 ------------------------------------------------------------ consensus_4041#0 CGCCAAGTACGCGCAGTACCAGGCGTCGAGCTTTTCGGACAAGATTAAGGAGGAGCGTGA 480 consensus_4041#1 ------------------------------------------------------------ consensus_4041#0 CAAGCTGGCCGGCATTTCGACCGCCTCCACCAACTCCGACTCCGACTCGAAGGATTCCAT 540 consensus_4041#1 --------------------------------------------CCGCCCACGCGTCCGC 16 * * * * *** consensus_4041#0 CTCGAACAGTGGCAGTGCGTGCGGCGGCGGCGGTGGCACGGGAGCGACCAGCGGTGGAGG 600 consensus_4041#1 CC---ACGCGTCCGGTGCGTGCGGCGGCGGTGGTGGTACGGGAGCGACCAGTGGTGGTGG 73 * ** * **************** ***** ************** ***** ** consensus_4041#0 AACCGGTACCGGTGGCGGTAACAGTTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAA 660 consensus_4041#1 AACCGGTACCGGTGGCGGTAACAGCTCCGCTGCCGGCAACGGCAAACGGAAGAAGTGCAA 133 ************************ *********************************** consensus_4041#0 AAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTG 720 consensus_4041#1 AAACGGTAACAAAATGTTACGCTTCGGCACGAACGTCGATCTGTCCGATGAGCGCAAGTG 193 ************************************************************ consensus_4041#0 GAAGGCGCAGCTGCAGGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGC 780 consensus_4041#1 GAAGGCGCAGCTGCAAGAGCTACAGAAGCTGCCACCGTTTGCGCGCGTCGTTTCGGCCGC 253 *************** ******************************************** consensus_4041#0 CAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACAT 840 consensus_4041#1 CAACATGCTGTCACACGTCGGTCACATGATCCTTGGGATGAACACGGTGCAGCTGTACAT 313 ************************************************************ consensus_4041#0 GAAGGTGCCAGGCAGTAGGACGCCCGGTCACCAGGAGAACAACAACTTCTGCTCGATCAA 900 consensus_4041#1 GAAGGTGCCGGGCAGTAGGACGCCCGGTCACCAGGAGAACAATAACTTCTGCTCGATCAA 373 ********* ******************************** ***************** consensus_4041#0 CATCAATATTGGGCCGGGCGATTGGTGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCG 960 consensus_4041#1 CATCAATATTGGGCCGGGCGATTG-TGAGTGGTTTGCGACGCCCGACTCGTACTGGGGCG 432 ************************ *********************************** consensus_4041#0 GC---------------------------------------------------------- 962 consensus_4041#1 GCATCCAGGCGCTGTGCGAGAAGAATAACATCAACTATCTGCACGGGTCGTGGTGGCCGG 492 ** consensus_4041#0 ------------------------------------------------------------ consensus_4041#1 CGCTCGAGGATCTGTACGCGGAGAACATACCGGTGTACCGGTTCACGCAACGGCCGGGCG 552 consensus_4041#0 ---------------------------------------------------------- consensus_4041#1 ATCTGGTGTGGGTTAATGCGGGATGTGTCCACTGGGTGCAGGCCATCGGCTGGTGTAA 610 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||