These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 907 fasta sequence [CCGCAAGCATACGCGGAAAAAGGATGTGAAGCGAAAGGTGGCAAACACACACACACACACACAAGCGCGTGTGTACACATCCTTGGAGAACAGGAGTGTGATGATGGAGGGAGGGATGTTGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTTGGTTCGTTGTCCCTGCTTTCATTTTGCCTTTTGCACGAAACACACATACACGACACGCGCCCCTAGCAACGCTCCCCCCCCCCCAAACAACCAATCAGCATCGCATCACGCGCAGAGGACAGCAGAGGAGGCGTTGCGTCAATCTTACTTTTTTTATTTTTTAATGAAGCTAGGAACCATTTTTAGTAAGCGTGAAAAGTGTGTGTGTGCTCTGTTACACGAAACAACACCCCCTCCCAAGAAAGGATAATATATTTGTGTATGTATTGTAACCCATTATGATTGAAACCATCCTTCAAGGTAGCCTGAATAATAAGCAAAAATAAGAAAAAAAGGAAACGAAACAAGCGGTCCCTGTAAAAACGAAGGGAGGGACGGATTTTTAACTGTTCGTTTGGGGACACTTACTGGAACCGTCAGCTGTTGCTGCTGCTAGACAATGGGGAAAGCGATGGCAAATGGCAGTTATGCGGTCATAACTAATTTTTGAACTGTTTAGTTATCTCTGTTCCTGTTTTTTTTTTCAATATCGAACACATAATATTGTAAATTATTTTTGGTAAACTTCTTTCCTAGTTACAATCACATTTCCAAGGAGTAATTCGTTTTGCTGTGTTCTTCTGTTATCTAATTCTAGTGCGATCTATTCGGCCCTTTTCCCTCCCTTTTTGTAAGAAAGCAATTGTTTTGTTTTATGTTTTGNATTTGTCTTTGCTTCGTACACGCACACGTCTCGTTTCGTTTTTTTT] [+] EMBL BM584552 [CCGCAAGCATACGCGGAAAAAGGATGTGAAGCGAAAGGTGGCAAACACACACACACACACACAAGCGCGTGTGTACACATCCTTGGAGAACAGGAGTGTGATGATGGAGGGAGGGATGTTGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTTGGTTCGTTGTCCCTGCTTTCATTTTGCCTTTTGCACGAAACACACATACACGACACGCGCCCCTAGCAACGCTCCCCCCCCCCCAAACAACCAATCAGCATCGCATCACGCGCAGAGGACAGCAGAGGAGGCGTTGCGTCAATCTTACTTTTTTTATTTTTTAATGAAGCTAGGAACCATTTTTAGTAAGCGTGAAAAGTGTGTGTGTGCTCTGTTACACGAAACAACACCCCCTCCCAAGAAAGGATAATATATTTGTGTATGTATTGTAACCCATTATGATTGAAACCATCCTTCAAGGTAGCCTGAATAATAAGCAAAAATAAGAAAAAAAGGAAACGAAACAAGCGGTCCCTGTAAAAACGAAGGGAGGGACGGATTTTTAACTGTTCGTTTGGGGACACTTACTGGAACCGTCAGCTGTTGCTGCTGCTAGACAATGGGGAAAGCGATGGCAAATGGCAGTTATGCGGTCATAACTAATTTTTGA ] [+] EMBL BX626515 [ GTGTGTGTGCTCTGTTACACGAAACAACACCGCCTCCCAAGAAAGGATAATATATTTGTGTATGTATTGTAACCCATTATGATTGAAACCATCCTTCAAGGTAGCCTGAATAATAAGNAAAAATAAGAAAAAAAGGAAACGAAACAAGCGGTCCCTGTAAAAACGAAGGGAGGGACGGATTTTTAACTGTTCGTTTGGGAACACTTACTGGAACCGTCAGCTGTTGCTGCTGCTAGACAGTGGGGAAAGCGATGGCAAATGGCAGTTATGCGGTCATAACTAATTTTTGAACTGTTTAGTTATCTCTGTTCCTGTTTTTTTTTTCAATATCGAACACATAATATTGTAAATTATTTTTGGTAAACTTCTTTCCTAGTTACAATCACATTTCCAAGGAGTAATTCGTTTTGCTGTGTTCTTCTGTTATCTAATTCTAGTGCGATCTATTCGGCCCTTTTCCCTCCCTTTTTGTAAGAAAGCAATTGTTTTGTTTTATGTTTTGNATTTGTCTTTGCTTCGTACACGCACACGTCTCGTTTCGTTTTTTTT] consensusID : consensus_4043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence [GGCAAGAATCGGCACGTAGGAGTATCTTGAATCGCTCTCTCGTTTCGGTTTGATTCTTTTTCTTGTGTGAAGGATATATCCTACTCTCCACAGTTCGGACAAACCTGTCAGACTCAACGAAACCTGTCTGCCTTCTTCTCCTCTCCGTCCGATGTTGGTTCGATGCCAAACGAAAACCGCTCGTGTAAAGCAAAAACAAATGCCTGAAACACACTGCTTACACACAGACAAAAAAAAGAGCCGAAAGTTTGGTTTTTGGTGGCCGGTTCCTGAGCCATGAGCCGCCCCGTTTCGAACTCGTTTTCTCTCTGATATGATAAATGATGGCGAAGGTCGTCGCGTTCGTTTTTTTTTGGAATTTTTTATGCTATGCAAATGCTGCCGAAACAGCAACCACCATTATATCAGCGAAAAATGTTTGCTTTTTTCTAGTTAGGTGTTTTATTCTTTCTTGTTGTACACTTCTAGCCCACACTTCTTTGTATCGTAAGCAAGCAACCCAGCCAGACACACACACAAGCGCGTGTGTACACATCCTTGGAGAACAGGAGTGTGATGATGGAGGGAGGGATGTTGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTAGGTTCGTGGTCCCTGCTTTCATTTTGGCCTTTTTGCACGGAAAGCACGACATACACGAAACGCGGCCCCTAGGCAAAACGGACTTCACACANCNACAGCCAAAAGCAACCCAAATCAAGGAATTCCGGCNATCAACGGCGCAAAGAAGGACAAGGGCAGAAGGAGGCNNTTAGCGGTTCAAATCCTTA] [+] EMBL BX467559 [GGCAAGAATCGGCACGTAGGAGTATCTTGAATCGCTCTCTCGTTTCGGTTTGATTCTTTTTCTTGTGTGAAGGATATATCCTACTCTCCACAGTTCGGACAAACCTGTCAGACTCAACGAAACCTGTCTGCCTTCTTCTCCTCTCCGTCCGATGTTGGTTCGATGCCAAACGAAAACCGCTCGTGTAAAGCAAAAACAAATGCCTGAAACACACTGCTTACACACAGACAAAAAAAAGAGCCGAAAGTTTGGTTTTTGGTGGCCGGTTCCTGAGCCATGAGCCGCCCCGTTTCGAACTCGTTTTCTCTCTGATATGATAAATGATGGCGAAGGTCGTCGCGTTCGTTTTTTTTTGGAATTTTTTATGCTATGCAAATGCTGCCGAAACAGCAACCACCATTATATCAGCGAAAAATGTTTGCTTTTTTCTAGTTAGGTGTTTTATTCTTTCTTGTTGTACACTTCTAGCCCACACTTCTTTGTATCGTAAGCAAGCAACCCAGCCAGACACACACACAAGCGCGTGTGTACACATCCTTGGAGAACAGGAGTGTGATGATGGAGGGAGGGATGTTGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTAGGTTCGTGGTCCCTGCTTTCATTTTGGCCTTTTTGCACGGAAAGCACGACATACACGAAACGCGGCCCCTAGGCAAAACGGACTTCACACANCNACAGCCAAAAGCAACCCAAATCAAGGAATTCCGGCNATCAACGGCGCAAAGAAGGACAAGGGCAGAAGGAGGCNNTTAGCGGTTCAAATCCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4043#0 CCGCAAGCATACGCGGAAAAAGGATGTGAAGCGAAAGGTGGCAAACACACACACACACAC 60 consensus_4043#1 -------------------------------------------GGCAAGAATCGGCACGT 17 ** * *** consensus_4043#0 ACAAGCGCGTGTGTACACATCCTTGGAG-AACAGGAGTGTGATGATGGAGGGAGGGATGT 119 consensus_4043#1 AGGAGTATCTTGAATCGCTCTCTCGTTTCGGTTTGATTCTTTTTCTTGTGTGAAGGATAT 77 * ** * * * ** * ** * * * * * * ** **** * consensus_4043#0 TGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTTGGTTCGTTGTCCCTGCTTTCA 179 consensus_4043#1 ATCCTACTCTCCACA-GTTCGGACAAACCTGTCAGACTCAACGAAACCTGTCTGCCTTC- 135 ** * * ** * * * * * * **** *** consensus_4043#0 TTTTGCCTTTTGCACGAAACACACATACACGACACGCGCCCCTAGCAACGCTCCCCCCCC 239 consensus_4043#1 TTCTCCTCTCCGTCCGATGT-TGGTTCGATGCCAAACG-----AAAACCGCTCGTGTAAA 189 ** * * * * *** * * * ** ** * * ***** consensus_4043#0 CCCAAACAACCAATCAGCATCGCATCACGCGCAGA-GGACAGCAGAGGAGGCGTTGCGTC 298 consensus_4043#1 GCAAAAACAAATGCCTGAAACACACTGCTTACACACAGACAAAAAAAAGAGC----CGAA 245 * *** * * * * * ** * ** * **** * * ** ** consensus_4043#0 AATCTTACTTTTTTTATTTTTTAATGAAGCTAGGAACCATTTTTAGTAAGCGTGAAAAGT 358 consensus_4043#1 AGTTTGGTTTTTGGTGGCCGGTTCCTGAGCCATGAGCCGCCC--------CGTTTCGAAC 297 * * * **** * * *** * ** ** *** * consensus_4043#0 GTGTGTGTGCTCTGTTACACGAAACAACACCCCCTCCCAAGAAAGGATAATATATTTGTG 418 consensus_4043#1 TCGTTTTCTCTCTGATATGATAAATGATGGC----------GAAGGTCGTCGCGTTCGT- 346 ** * ***** ** *** * * **** ** ** consensus_4043#0 TATGTATTGTAACCCATTATGATTGAAACCATCCTTCAAGGTAGCCTGAATAATAAGCAA 478 consensus_4043#1 TTTTTTTTGGAATTTTTTATG-------CTATGCA--AATGCTGCCGAAACAGCAACCAC 397 * * * *** ** ***** * ** * ** * *** ** * ** ** consensus_4043#0 AAATAAGAAAAAAAGGAAACGAAACAAGCGGTCCCTGTAAAAACGAAGGGAGGGACGGAT 538 consensus_4043#1 CATTATATC--------AGCGAAAAATGTTTGCTTTTTTCTAGTTAGGTGTTTTATTC-T 448 * ** * ***** * * * * * * * * * * * consensus_4043#0 TTTTAACTGTTCGTTTGGGG---ACACTTACTGGAACCGTCAGCTGTTGCTGCTGCTAGA 595 consensus_4043#1 TTCTTGTTGTACACTTCTAGCCCACACTTCTTTGTATCGTAAGCAAGCAACCCAGCCAGA 508 ** * *** * ** * ****** * * * *** *** * ** *** consensus_4043#0 CAATGGGGAAAGCGATGGCAAATGGCAGTTATGCGGTCATAACTAATTTTTGAACTGTTT 655 consensus_4043#1 CACACACACAAGCGCGTGTGTACACATCCTTGGAGAACAGGAGTGTGATGATGGAGGGAG 568 ** ***** * * * * * ** * * * * consensus_4043#0 AGTTATCTCTGTTCCTGTTTTTTTTTTCA-ATATCGA-ACACATAATATTGTAAAT--TA 711 consensus_4043#1 GGATGTTGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTAGGTTCGTGGTCCCTG 628 * * * * *** ** * * * * * * * ** * ** * consensus_4043#0 TTTTTGGT--AAACTTCTTTCCTAGTTACAATCACATTTCCAAGGAGTAATTCGTTT-TG 768 consensus_4043#1 CTTTCATTTTGGCCTTTTTGCACGGAAAGCACGACATACACGAAACGCGGCCCCTAGGCA 688 *** * *** ** * * * * **** * * * * * consensus_4043#0 CTGTGTTCTTCTGTTATCTA-ATTCTAGTGCGATCTATTCGGCCCTTTTCCCTCCCTTTT 827 consensus_4043#1 AAACGGACTTCACACANCNACAGCCAAAAGCAACCCAAATCAAGGAATTCCGGCNATCAA 748 * **** * * * * * * ** * * * **** * * consensus_4043#0 TGTAAGAAAGCAATTGTTTTGTTTTATGTTTTGNATTTGTCTTTGCTTCGTACACGCACA 887 consensus_4043#1 CGGCGCAAAG-AAGGACAAGGGCAGAAG----GAGGCNNTTAGCGGTTCAAATCCTTA-- 801 * **** ** * * * * * * *** * * * consensus_4043#0 CGTCTCGTTTCGTTTTTTTT 907 consensus_4043#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||