cluster # 4043

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Anopheles gambiae
cluster # 4043 cluster # 4043 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4043#0 length = 907 sequences # 2

consensus_4043#1 length = 801 sequences # 1

consensusID : consensus_4043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 907
fasta sequence

                              [CCGCAAGCATACGCGGAAAAAGGATGTGAAGCGAAAGGTGGCAAACACACACACACACACACAAGCGCGTGTGTACACATCCTTGGAGAACAGGAGTGTGATGATGGAGGGAGGGATGTTGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTTGGTTCGTTGTCCCTGCTTTCATTTTGCCTTTTGCACGAAACACACATACACGACACGCGCCCCTAGCAACGCTCCCCCCCCCCCAAACAACCAATCAGCATCGCATCACGCGCAGAGGACAGCAGAGGAGGCGTTGCGTCAATCTTACTTTTTTTATTTTTTAATGAAGCTAGGAACCATTTTTAGTAAGCGTGAAAAGTGTGTGTGTGCTCTGTTACACGAAACAACACCCCCTCCCAAGAAAGGATAATATATTTGTGTATGTATTGTAACCCATTATGATTGAAACCATCCTTCAAGGTAGCCTGAATAATAAGCAAAAATAAGAAAAAAAGGAAACGAAACAAGCGGTCCCTGTAAAAACGAAGGGAGGGACGGATTTTTAACTGTTCGTTTGGGGACACTTACTGGAACCGTCAGCTGTTGCTGCTGCTAGACAATGGGGAAAGCGATGGCAAATGGCAGTTATGCGGTCATAACTAATTTTTGAACTGTTTAGTTATCTCTGTTCCTGTTTTTTTTTTCAATATCGAACACATAATATTGTAAATTATTTTTGGTAAACTTCTTTCCTAGTTACAATCACATTTCCAAGGAGTAATTCGTTTTGCTGTGTTCTTCTGTTATCTAATTCTAGTGCGATCTATTCGGCCCTTTTCCCTCCCTTTTTGTAAGAAAGCAATTGTTTTGTTTTATGTTTTGNATTTGTCTTTGCTTCGTACACGCACACGTCTCGTTTCGTTTTTTTT]

[+] EMBL BM584552             [CCGCAAGCATACGCGGAAAAAGGATGTGAAGCGAAAGGTGGCAAACACACACACACACACACAAGCGCGTGTGTACACATCCTTGGAGAACAGGAGTGTGATGATGGAGGGAGGGATGTTGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTTGGTTCGTTGTCCCTGCTTTCATTTTGCCTTTTGCACGAAACACACATACACGACACGCGCCCCTAGCAACGCTCCCCCCCCCCCAAACAACCAATCAGCATCGCATCACGCGCAGAGGACAGCAGAGGAGGCGTTGCGTCAATCTTACTTTTTTTATTTTTTAATGAAGCTAGGAACCATTTTTAGTAAGCGTGAAAAGTGTGTGTGTGCTCTGTTACACGAAACAACACCCCCTCCCAAGAAAGGATAATATATTTGTGTATGTATTGTAACCCATTATGATTGAAACCATCCTTCAAGGTAGCCTGAATAATAAGCAAAAATAAGAAAAAAAGGAAACGAAACAAGCGGTCCCTGTAAAAACGAAGGGAGGGACGGATTTTTAACTGTTCGTTTGGGGACACTTACTGGAACCGTCAGCTGTTGCTGCTGCTAGACAATGGGGAAAGCGATGGCAAATGGCAGTTATGCGGTCATAACTAATTTTTGA                                                                                                                                                                                                                                                                   ]
[+] EMBL BX626515             [                                                                                                                                                                                                                                                                                                                                                                      GTGTGTGTGCTCTGTTACACGAAACAACACCGCCTCCCAAGAAAGGATAATATATTTGTGTATGTATTGTAACCCATTATGATTGAAACCATCCTTCAAGGTAGCCTGAATAATAAGNAAAAATAAGAAAAAAAGGAAACGAAACAAGCGGTCCCTGTAAAAACGAAGGGAGGGACGGATTTTTAACTGTTCGTTTGGGAACACTTACTGGAACCGTCAGCTGTTGCTGCTGCTAGACAGTGGGGAAAGCGATGGCAAATGGCAGTTATGCGGTCATAACTAATTTTTGAACTGTTTAGTTATCTCTGTTCCTGTTTTTTTTTTCAATATCGAACACATAATATTGTAAATTATTTTTGGTAAACTTCTTTCCTAGTTACAATCACATTTCCAAGGAGTAATTCGTTTTGCTGTGTTCTTCTGTTATCTAATTCTAGTGCGATCTATTCGGCCCTTTTCCCTCCCTTTTTGTAAGAAAGCAATTGTTTTGTTTTATGTTTTGNATTTGTCTTTGCTTCGTACACGCACACGTCTCGTTTCGTTTTTTTT]




>consensus_4043#0
CCGCAAGCATACGCGGAAAAAGGATGTGAAGCGAAAGGTGGCAAACACACACACACACAC
ACAAGCGCGTGTGTACACATCCTTGGAGAACAGGAGTGTGATGATGGAGGGAGGGATGTT
GCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTTGGTTCGTTGTCCCTGCTTTCAT
TTTGCCTTTTGCACGAAACACACATACACGACACGCGCCCCTAGCAACGCTCCCCCCCCC
CCAAACAACCAATCAGCATCGCATCACGCGCAGAGGACAGCAGAGGAGGCGTTGCGTCAA
TCTTACTTTTTTTATTTTTTAATGAAGCTAGGAACCATTTTTAGTAAGCGTGAAAAGTGT
GTGTGTGCTCTGTTACACGAAACAACACCCCCTCCCAAGAAAGGATAATATATTTGTGTA
TGTATTGTAACCCATTATGATTGAAACCATCCTTCAAGGTAGCCTGAATAATAAGCAAAA
ATAAGAAAAAAAGGAAACGAAACAAGCGGTCCCTGTAAAAACGAAGGGAGGGACGGATTT
TTAACTGTTCGTTTGGGGACACTTACTGGAACCGTCAGCTGTTGCTGCTGCTAGACAATG
GGGAAAGCGATGGCAAATGGCAGTTATGCGGTCATAACTAATTTTTGAACTGTTTAGTTA
TCTCTGTTCCTGTTTTTTTTTTCAATATCGAACACATAATATTGTAAATTATTTTTGGTA
AACTTCTTTCCTAGTTACAATCACATTTCCAAGGAGTAATTCGTTTTGCTGTGTTCTTCT
GTTATCTAATTCTAGTGCGATCTATTCGGCCCTTTTCCCTCCCTTTTTGTAAGAAAGCAA
TTGTTTTGTTTTATGTTTTGNATTTGTCTTTGCTTCGTACACGCACACGTCTCGTTTCGT
TTTTTTT

consensusID : consensus_4043#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 801
fasta sequence

                              [GGCAAGAATCGGCACGTAGGAGTATCTTGAATCGCTCTCTCGTTTCGGTTTGATTCTTTTTCTTGTGTGAAGGATATATCCTACTCTCCACAGTTCGGACAAACCTGTCAGACTCAACGAAACCTGTCTGCCTTCTTCTCCTCTCCGTCCGATGTTGGTTCGATGCCAAACGAAAACCGCTCGTGTAAAGCAAAAACAAATGCCTGAAACACACTGCTTACACACAGACAAAAAAAAGAGCCGAAAGTTTGGTTTTTGGTGGCCGGTTCCTGAGCCATGAGCCGCCCCGTTTCGAACTCGTTTTCTCTCTGATATGATAAATGATGGCGAAGGTCGTCGCGTTCGTTTTTTTTTGGAATTTTTTATGCTATGCAAATGCTGCCGAAACAGCAACCACCATTATATCAGCGAAAAATGTTTGCTTTTTTCTAGTTAGGTGTTTTATTCTTTCTTGTTGTACACTTCTAGCCCACACTTCTTTGTATCGTAAGCAAGCAACCCAGCCAGACACACACACAAGCGCGTGTGTACACATCCTTGGAGAACAGGAGTGTGATGATGGAGGGAGGGATGTTGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTAGGTTCGTGGTCCCTGCTTTCATTTTGGCCTTTTTGCACGGAAAGCACGACATACACGAAACGCGGCCCCTAGGCAAAACGGACTTCACACANCNACAGCCAAAAGCAACCCAAATCAAGGAATTCCGGCNATCAACGGCGCAAAGAAGGACAAGGGCAGAAGGAGGCNNTTAGCGGTTCAAATCCTTA]

[+] EMBL BX467559             [GGCAAGAATCGGCACGTAGGAGTATCTTGAATCGCTCTCTCGTTTCGGTTTGATTCTTTTTCTTGTGTGAAGGATATATCCTACTCTCCACAGTTCGGACAAACCTGTCAGACTCAACGAAACCTGTCTGCCTTCTTCTCCTCTCCGTCCGATGTTGGTTCGATGCCAAACGAAAACCGCTCGTGTAAAGCAAAAACAAATGCCTGAAACACACTGCTTACACACAGACAAAAAAAAGAGCCGAAAGTTTGGTTTTTGGTGGCCGGTTCCTGAGCCATGAGCCGCCCCGTTTCGAACTCGTTTTCTCTCTGATATGATAAATGATGGCGAAGGTCGTCGCGTTCGTTTTTTTTTGGAATTTTTTATGCTATGCAAATGCTGCCGAAACAGCAACCACCATTATATCAGCGAAAAATGTTTGCTTTTTTCTAGTTAGGTGTTTTATTCTTTCTTGTTGTACACTTCTAGCCCACACTTCTTTGTATCGTAAGCAAGCAACCCAGCCAGACACACACACAAGCGCGTGTGTACACATCCTTGGAGAACAGGAGTGTGATGATGGAGGGAGGGATGTTGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTAGGTTCGTGGTCCCTGCTTTCATTTTGGCCTTTTTGCACGGAAAGCACGACATACACGAAACGCGGCCCCTAGGCAAAACGGACTTCACACANCNACAGCCAAAAGCAACCCAAATCAAGGAATTCCGGCNATCAACGGCGCAAAGAAGGACAAGGGCAGAAGGAGGCNNTTAGCGGTTCAAATCCTTA]




>consensus_4043#1
GGCAAGAATCGGCACGTAGGAGTATCTTGAATCGCTCTCTCGTTTCGGTTTGATTCTTTT
TCTTGTGTGAAGGATATATCCTACTCTCCACAGTTCGGACAAACCTGTCAGACTCAACGA
AACCTGTCTGCCTTCTTCTCCTCTCCGTCCGATGTTGGTTCGATGCCAAACGAAAACCGC
TCGTGTAAAGCAAAAACAAATGCCTGAAACACACTGCTTACACACAGACAAAAAAAAGAG
CCGAAAGTTTGGTTTTTGGTGGCCGGTTCCTGAGCCATGAGCCGCCCCGTTTCGAACTCG
TTTTCTCTCTGATATGATAAATGATGGCGAAGGTCGTCGCGTTCGTTTTTTTTTGGAATT
TTTTATGCTATGCAAATGCTGCCGAAACAGCAACCACCATTATATCAGCGAAAAATGTTT
GCTTTTTTCTAGTTAGGTGTTTTATTCTTTCTTGTTGTACACTTCTAGCCCACACTTCTT
TGTATCGTAAGCAAGCAACCCAGCCAGACACACACACAAGCGCGTGTGTACACATCCTTG
GAGAACAGGAGTGTGATGATGGAGGGAGGGATGTTGCCATTCGGGTATATGTGTGTGTGT
GTGTATGTGTGTAGGTTCGTGGTCCCTGCTTTCATTTTGGCCTTTTTGCACGGAAAGCAC
GACATACACGAAACGCGGCCCCTAGGCAAAACGGACTTCACACANCNACAGCCAAAAGCA
ACCCAAATCAAGGAATTCCGGCNATCAACGGCGCAAAGAAGGACAAGGGCAGAAGGAGGC
NNTTAGCGGTTCAAATCCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4043#0      CCGCAAGCATACGCGGAAAAAGGATGTGAAGCGAAAGGTGGCAAACACACACACACACAC 60
consensus_4043#1      -------------------------------------------GGCAAGAATCGGCACGT 17
                                                                   **   *    ***  

consensus_4043#0      ACAAGCGCGTGTGTACACATCCTTGGAG-AACAGGAGTGTGATGATGGAGGGAGGGATGT 119
consensus_4043#1      AGGAGTATCTTGAATCGCTCTCTCGTTTCGGTTTGATTCTTTTTCTTGTGTGAAGGATAT 77
                      *  **    *     * *   ** *         ** * *  *  * * * ** **** *

consensus_4043#0      TGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTTGGTTCGTTGTCCCTGCTTTCA 179
consensus_4043#1      ATCCTACTCTCCACA-GTTCGGACAAACCTGTCAGACTCAACGAAACCTGTCTGCCTTC- 135
                        **        * * **  *        * *  *  *          *  **** *** 

consensus_4043#0      TTTTGCCTTTTGCACGAAACACACATACACGACACGCGCCCCTAGCAACGCTCCCCCCCC 239
consensus_4043#1      TTCTCCTCTCCGTCCGATGT-TGGTTCGATGCCAAACG-----AAAACCGCTCGTGTAAA 189
                      ** * *  *  *  ***        *  * * **  **     *  * *****       

consensus_4043#0      CCCAAACAACCAATCAGCATCGCATCACGCGCAGA-GGACAGCAGAGGAGGCGTTGCGTC 298
consensus_4043#1      GCAAAAACAAATGCCTGAAACACACTGCTTACACACAGACAAAAAAAAGAGC----CGAA 245
                       * ***  *     * * * * **   *   ** *  ****  * *    **    **  

consensus_4043#0      AATCTTACTTTTTTTATTTTTTAATGAAGCTAGGAACCATTTTTAGTAAGCGTGAAAAGT 358
consensus_4043#1      AGTTTGGTTTTTGGTGGCCGGTTCCTGAGCCATGAGCCGCCC--------CGTTTCGAAC 297
                      * * *   ****  *      *     *** * ** **            ***    *  

consensus_4043#0      GTGTGTGTGCTCTGTTACACGAAACAACACCCCCTCCCAAGAAAGGATAATATATTTGTG 418
consensus_4043#1      TCGTTTTCTCTCTGATATGATAAATGATGGC----------GAAGGTCGTCGCGTTCGT- 346
                        ** *   ***** **    ***  *   *           ****        ** ** 

consensus_4043#0      TATGTATTGTAACCCATTATGATTGAAACCATCCTTCAAGGTAGCCTGAATAATAAGCAA 478
consensus_4043#1      TTTTTTTTGGAATTTTTTATG-------CTATGCA--AATGCTGCCGAAACAGCAACCAC 397
                      * * * *** **    *****       * ** *   ** *  ***  ** *  ** ** 

consensus_4043#0      AAATAAGAAAAAAAGGAAACGAAACAAGCGGTCCCTGTAAAAACGAAGGGAGGGACGGAT 538
consensus_4043#1      CATTATATC--------AGCGAAAAATGTTTGCTTTTTTCTAGTTAGGTGTTTTATTC-T 448
                       * **            * ***** * *    *  * *   *   * * *    *    *

consensus_4043#0      TTTTAACTGTTCGTTTGGGG---ACACTTACTGGAACCGTCAGCTGTTGCTGCTGCTAGA 595
consensus_4043#1      TTCTTGTTGTACACTTCTAGCCCACACTTCTTTGTATCGTAAGCAAGCAACCCAGCCAGA 508
                      ** *   *** *  **   *   ******  * * * *** ***        * ** ***

consensus_4043#0      CAATGGGGAAAGCGATGGCAAATGGCAGTTATGCGGTCATAACTAATTTTTGAACTGTTT 655
consensus_4043#1      CACACACACAAGCGCGTGTGTACACATCCTTGGAGAACAGGAGTGTGATGATGGAGGGAG 568
                      **       *****   *   *       *  * *  **  * *    *       *   

consensus_4043#0      AGTTATCTCTGTTCCTGTTTTTTTTTTCA-ATATCGA-ACACATAATATTGTAAAT--TA 711
consensus_4043#1      GGATGTTGCCATTCGGGTATATGTGTGTGTGTGTGTATGTGTGTAGGTTCGTGGTCCCTG 628
                       * * *  *  ***  ** * * * *     * *  *      **   * **      * 

consensus_4043#0      TTTTTGGT--AAACTTCTTTCCTAGTTACAATCACATTTCCAAGGAGTAATTCGTTT-TG 768
consensus_4043#1      CTTTCATTTTGGCCTTTTTGCACGGAAAGCACGACATACACGAAACGCGGCCCCTAGGCA 688
                       ***   *     *** ** *   *  *  *  ****   * *   *     * *     

consensus_4043#0      CTGTGTTCTTCTGTTATCTA-ATTCTAGTGCGATCTATTCGGCCCTTTTCCCTCCCTTTT 827
consensus_4043#1      AAACGGACTTCACACANCNACAGCCAAAAGCAACCCAAATCAAGGAATTCCGGCNATCAA 748
                          *  ****    * * * *  * *  ** * * *          ****  *  *   

consensus_4043#0      TGTAAGAAAGCAATTGTTTTGTTTTATGTTTTGNATTTGTCTTTGCTTCGTACACGCACA 887
consensus_4043#1      CGGCGCAAAG-AAGGACAAGGGCAGAAG----GAGGCNNTTAGCGGTTCAAATCCTTA-- 801
                       *    **** **       *    * *    *      *    * ***  *  *  *  

consensus_4043#0      CGTCTCGTTTCGTTTTTTTT 907
consensus_4043#1      --------------------