These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 729 fasta sequence [AAAGAGAGGGAACTATTTGAGTGAAGCAAACGGGGCTTGTAGAGGAAAGTTTGTCCAATTTCACCAATTTCTTCGGTTCAAACAAACAGTACAGTTTATGCTCGTCTTTCCTGTGCAAAGTGCGCATAAGGATAGGATAATCACTGCAAACTCGTCCTCATCCCGTAAGCGAAGCTTTTCTTAGTGTCTCCCTTGATTGATAAAG-TGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATGTAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACACATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAACTCTCTTCGCTTTTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGTGTAATTTAACGAAAAAAACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGGAAAGATGTGTACCGAGTTTGGAAAACG-ATAAGAATACTCAATGGTGGTGTAAACTCAAGCTGGAAAGCGAAAAAGCGATGAGATTCCGGTTCGAGAAAAAAAGGTATGTTGTAAAGGTCTTGCTTTCATCTTTCCTTTGTTTTGCTGTGGTTTACATAATTATTATCATTATTCAGAAAAGGGATTATTTTAAAACGTAAATTTTGTATAATTTTGAGGAAATAAGCAAGAGTGTTAGGGAGTGGAAAAGGATT] [+] EMBL BX605466 [AAAGAGAGGGAACTATTTGAGTGAAGCAAACGGGGCTTGTAGAGGAAAGTTTGTCCAATTTCACCAATTTCTTCGGTTCAAACAAACAGTACAGTTTATGCTCGTCTTTCCTGTGCAAAGTGCGCATAAGGATAGGATAATCACTGCAAACTCGTCCTCATCCCGTAAGCGAAGCTTTTCTTAGTGTCTCCCTTGATTGATAAAG TGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATGTAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACACATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAACTCTCTTCGCTTTTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGTGTAATTTAACGAAAAAAACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGGAAAGATGTGTACCGAGTTTGGAAAACG ATAAGAATACTCAATGGTGGTGTAAACTCAAGCTGGAAAGCGAAAAAGCGATGAGATTCCGGTTCGAGAAAAAAAGGTATGTTGTAAAGGTCTTGCTTTCATCTTTCCTTTGTTTTGCTGTGGTTTACATAATTATTATCATTATTCAGAAAAGGGATTATTTTAAAACGTAAATTTTGTATAATTTTGAGGAAATAAGCAAGAGTGTTAGGGAGTGGAAAAGGATT] [+] EMBL CNS09ID8 [ tAAACAAACAGTACAGTTTATGCTCGTCTTTCCTGTGCAAAGTGCGCATAAGGATAGGATAATCACTGCAAACTCGTCCTCATCCCGTAAGCGAATTCTTTCTTAGTGTCTCCCTTGATTGATAAAGATGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATGTAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACACATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAACTCTCTTCGCTTTTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGTGTAATTTAACGAAAAAAACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGGAAAGATGTGTACCGAGTTTGGAAAACGCATAAGAATACTCAATGGTGGTGTAAACTCAAGCTGGAAAGCGAAAAAGCGATGAGATTCCGGTTCGAGAAAAAAAGGTATG ] consensusID : consensus_4044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [TCGCCCGAGGTTATAGGATAATCACTGCAAACTCGTCCTCATCCGTAAGCGAAGCTTTTCTTAGTGTCTCCCTTGATTGATAAAGTGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATGTAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACATCATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAAACTCTCTTCGCTGTTTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGATGTAATTTAACGAAAACAAACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGGCCAAGATGTGTACCGAGTTTGGAACAACGATAACGAATACTCAATGGTGGTGTAAGACTCAAGCTGGAAAGCGAAAAAGCGATGCAGATTCCGGTTGCGCAGANAACACAACGGTATGTCGCTCAACAGGTCTTGCTTGTCACTCCTTTCCCTTTGCTATTGCCTGATGGTTTTACATAACTTATTATCAATTATNNCACGAACACGGGCATATATTTCACAACAACGGTACAATACGTAATAATTTCCGAGAGAAAATAAGCACAGAGNCTGTANGGGNGTGGCAACAGGAACATATTATACACNT] [+] EMBL AL933076 [TCGCCCGAGGTTATAGGATAATCACTGCAAACTCGTCCTCATCCGTAAGCGAAGCTTTTCTTAGTGTCTCCCTTGATTGATAAAGTGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATGTAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACATCATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAAACTCTCTTCGCTGTTTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGATGTAATTTAACGAAAACAAACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGGCCAAGATGTGTACCGAGTTTGGAACAACGATAACGAATACTCAATGGTGGTGTAAGACTCAAGCTGGAAAGCGAAAAAGCGATGCAGATTCCGGTTGCGCAGANAACACAACGGTATGTCGCTCAACAGGTCTTGCTTGTCACTCCTTTCCCTTTGCTATTGCCTGATGGTTTTACATAACTTATTATCAATTATNNCACGAACACGGGCATATATTTCACAACAACGGTACAATACGTAATAATTTCCGAGAGAAAATAAGCACAGAGNCTGTANGGGNGTGGCAACAGGAACATATTATACACNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4044#0 AAAGAGAGGGAACTATTTGAGTGAAGCAAACGGGGCTTGTAGAGGAAAGTTTGTCCAATT 60 consensus_4044#1 ------------------------------------------------------------ consensus_4044#0 TCACCAATTTCTTCGGTTCAAACAAACAGTACAGTTTATGCTCGTCTTTCCTGTGCAAAG 120 consensus_4044#1 -----------------------------------------------------------T 1 consensus_4044#0 TGCGCATAAGGATAGGATAATCACTGCAAACTCGTCCTCATCCCGTAAGCGAAGCTTTTC 180 consensus_4044#1 CGCCCGAGGTTATAGGATAATCACTGCAAACTCGTCCTCATCC-GTAAGCGAAGCTTTTC 60 ** * ******************************** **************** consensus_4044#0 TTAGTGTCTCCCTTGATTGATAAAGTGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATG 240 consensus_4044#1 TTAGTGTCTCCCTTGATTGATAAAGTGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATG 120 ************************************************************ consensus_4044#0 TAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACA- 299 consensus_4044#1 TAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACAT 180 *********************************************************** consensus_4044#0 CATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAA-CTCTCTTCGCT-T 357 consensus_4044#1 CATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAAACTCTCTTCGCTGT 240 ********************************************** *********** * consensus_4044#0 TTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAG-TGTAATTTAACGAAAA-A 415 consensus_4044#1 TTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGATGTAATTTAACGAAAACA 300 ***************************************** **************** * consensus_4044#0 AACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGG 475 consensus_4044#1 AACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGG 360 ************************************************************ consensus_4044#0 A-AAGATGTGTACCGAGTTTGGAA-AACGATAA-GAATACTCAATGGTGGTGTAA-ACTC 531 consensus_4044#1 CCAAGATGTGTACCGAGTTTGGAACAACGATAACGAATACTCAATGGTGGTGTAAGACTC 420 ********************** ******** ********************* **** consensus_4044#0 AAGCTGGAAAGCGAAAAAGCGATG-AGATTCCGGTT-CG-AGAAAA---AAAGGTATGTT 585 consensus_4044#1 AAGCTGGAAAGCGAAAAAGCGATGCAGATTCCGGTTGCGCAGANAACACAACGGTATGTC 480 ************************ *********** ** *** ** ** ******* consensus_4044#0 GT---AAAGGTCTTGCTT-TCATC---TTTCCTTTGTT-TTGCT--GTGGTTT-ACATAA 634 consensus_4044#1 GCTCAACAGGTCTTGCTTGTCACTCCTTTCCCTTTGCTATTGCCTGATGGTTTTACATAA 540 * * *********** *** ** ****** * **** ****** ****** consensus_4044#0 -TTATTATCA-TTATTCA--GAAAAGGGAT---TATTTTAAAAC----GTAAATTTTGTA 683 consensus_4044#1 CTTATTATCAATTATNNCACGAACACGGGCATATATTTCACAACAACGGTACAATACGTA 600 ********* **** *** * ** ***** * *** *** * * *** consensus_4044#0 -TAATTTT---GAGGAAATAAGCA---AGAGTGTTAGGGAGTGGAAA-AGGATT------ 729 consensus_4044#1 ATAATTTCCGAGAGAAAATAAGCACAGAGNCTGTANGGGNGTGGCAACAGGAACATATTA 660 ****** *** ********* ** *** *** **** ** **** consensus_4044#0 ------- consensus_4044#1 TACACNT 667 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||