These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAGCGGGAGCAGACGCTAGGGGATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCGTCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCGATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCACCGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATGATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCTCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCAAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCGAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAATGGTGTGAGCAGCGAGAACGAACGCACGCTTCAGATCGAACGAGTCCGCAAGAATATCCCACATTTTCTGCCGTTTAGTATTGGTAAACGGACCTGCATCGGGCAAAATCTGGTGCGCGGTTTCAGCTTCATCATCATCGCCAACATCTTGCAGAAATACGACGTGCACTCGAACGACCTCAGCCTGATCAAGATGTACCCGGCTTGTGTGGCCGTGCCGCCCGACACCTACCCGCTCGCCTTTACACAGCGCTCGACGGTGGCTGCCTAGA] [+] EMBL BM621668 [CCGCCCACGCGTCCGCCCACGCGTCCGAGCGGGAGCAGACGCTAGGGGATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCGTCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCGATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCACCGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATGATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCTCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCAAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCGAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAATGGTGTGAGCAGCGAGAACGAACGCACGCTTCAGATCGAACGAGTCCGCAAGAATATCCCACATTTTCTGCCGTTTAGTATTG ] [+] EMBL BX626172 [ TGATGCTTGCGCTCGGNTATATCGCAAAGCATCCGGAAGTGGGTCACCGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATGATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCTCGCCAATCGTGCCCCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCAAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCGAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGACGGATCTACGCGATTCGCCGACCGCCAAGCAGGANCTGACCAACATCATCAAAACAAATGGTGTGAGCAGCGAGAACGAACGCACGCTTCAGATCGAACGAGTCCGCAAGAATATCCCACATTTTCTGCCGTTTAGTATTGGTAAACGGACCTGCATCGGGCAAAATCTGGTGCGCGGTTTCAGCTTCATCATCATCGCCAACATCTTGCAGAAATACGACGTGCACTCGAACGACCTCAGCCTGATCAAGATGTACCCGGCTTGTGTGGCCGTGCCGCCCGACACCTACCCGCTCGCCTTTACACAGCGCTCGACGGTGGCTGCCTAGA] consensusID : consensus_4056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CCGAGATCCGGGACTTCATACTTGAACGGATTGTGAACGAGCGGGAGCAGACGCTAGGGGATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCGTCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCGATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCACCGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATGATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCTCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCAAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCGAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAATGGTGTGAGCAGCGAGAACGAACGCACGCTT] [+] EMBL BM595281 [CCGAGATCCGGGACTTCATACTTGAACGGATTGTGAACGAGCGGGAGCAGACGCTAGGGGATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCGTCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCGATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCACCGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTATGATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCCTCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACCAAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGCGAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGGACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAATGGTGTGAGCAGCGAGAACGAACGCACGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4056#0 -------------CCGCCCACGCGTCCGCCCACGCGTCCGAGCGGGAGCAGACGCTAGGG 47 consensus_4056#1 CCGAGATCCGGGACTTCATACTTGAACGGAT-TGTGAACGAGCGGGAGCAGACGCTAGGG 59 * * ** * ** * * ********************** consensus_4056#0 GATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCG 107 consensus_4056#1 GATGACGACACCGAGCGAGACTTTGCTGATGCACTGCTGAAAAGCTTACGGCTTGATCCG 119 ************************************************************ consensus_4056#0 TCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCG 167 consensus_4056#1 TCGGTAACGCGAGACACCATCATGTACATGCTGGAGGACTTCCTAGGTGGGCATTCAGCG 179 ************************************************************ consensus_4056#0 ATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCAC 227 consensus_4056#1 ATCGGCAATCTGGTGATGCTTGCGCTCGGCTATATCGCAAAGCATCCGGAAGTGGGTCAC 239 ************************************************************ consensus_4056#0 CGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTAT 287 consensus_4056#1 CGGATCCAGCGTGAGATCGATCGCATCACCGAGCGGGGCAAGCGAAACGTTACGCTGTAT 299 ************************************************************ consensus_4056#0 GATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCC 347 consensus_4056#1 GATACCGAGAGCATGCCATACACGGTCGCGACAATTTTCGAGGTGTTACGCTACTCTTCC 359 ************************************************************ consensus_4056#0 TCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACC 407 consensus_4056#1 TCGCCAATCGTGCCGCACGTCGCGACGGAGGACACGTGCATAGCCGGATACGGTGTCACC 419 ************************************************************ consensus_4056#0 AAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGC 467 consensus_4056#1 AAAGGCACGGTCGTGTTCATCAATAACTACGAGCTGAACACGAGTGAGCGGTACTGGAGC 479 ************************************************************ consensus_4056#0 GAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGG 527 consensus_4056#1 GAGCCGAAGCGCTTCAACCCCAGCCGGTTCATCGAGACGGCTACACTCGCTCAGATCCGG 539 ************************************************************ consensus_4056#0 ACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAAT 587 consensus_4056#1 ACGGATCTACGCGATTCGCCGACCGCCAAGCAGGACCTGACCAACATCATCAAAACAAAT 599 ************************************************************ consensus_4056#0 GGTGTGAGCAGCGAGAACGAACGCACGCTTCAGATCGAACGAGTCCGCAAGAATATCCCA 647 consensus_4056#1 GGTGTGAGCAGCGAGAACGAACGCACGCTT------------------------------ 629 ****************************** consensus_4056#0 CATTTTCTGCCGTTTAGTATTGGTAAACGGACCTGCATCGGGCAAAATCTGGTGCGCGGT 707 consensus_4056#1 ------------------------------------------------------------ consensus_4056#0 TTCAGCTTCATCATCATCGCCAACATCTTGCAGAAATACGACGTGCACTCGAACGACCTC 767 consensus_4056#1 ------------------------------------------------------------ consensus_4056#0 AGCCTGATCAAGATGTACCCGGCTTGTGTGGCCGTGCCGCCCGACACCTACCCGCTCGCC 827 consensus_4056#1 ------------------------------------------------------------ consensus_4056#0 TTTACACAGCGCTCGACGGTGGCTGCCTAGA 858 consensus_4056#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||