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Anopheles gambiae
cluster # 4061 cluster # 4061       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4061#0 length = 777 sequences # 2  
consensus_4061#1 length = 688 sequences # 1  

consensusID : consensus_4061#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 777
fasta sequence
                              [GAGGCAGAATCCGCACGAGGCGACAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCT-CAGTC-GGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCGTTCCCGCCTTTCCGTACACTCGAACGGCTC-GATGCTGCGAATTCGGCTGGAACGACTCCAGGCTAGAGTCTC-GGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACA-GGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTAGAGAAGAATTTGTTGCGTGCGCTAGTTTGCGAAAATTT-CGTGCCCATACGCGATTGTCA-CATCGACATGGGTCAGAG-ACAAACCTATCGCNTCGTGCG-TTGCCTG-TCCGGGAATGTACAGNGCTCGGTGG-TCGGTTTACAATCAGGAGTTGCGT-GCACGANACGGG--CGAAACGCTTGTTGGGAAGACGGAAGGNACAAAGCGCTACAGTACTTGGCTGTCGGAAACGTGGCCCGGACTGTGCACCTTTTACGATTGGGACCAG]

[+] EMBL BX467797             [GAGGCAGAATCCGCACGAGGCGACAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCT CAGTC GGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCGTTCCCGCCTTTCCGTACACTCGAACGGCTC GATGCTGCGAATTCGGCTGGAACGACTCCAGGCTAGAGTCTC GGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACA GGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTAGAGAAGAATTTGTTGCGTGCGCTAGTTTGCGAAAATTT CGTGCCCATACGCGATTGTCA CATCGACATGGGTCAGAG ACAAACCTATCGCNTCGTGCG TTGCCTG TCCGGGAATGTACAGNGCTCGGTGG TCGGTTTACAATCAGGAGTTGCGT GCACGANACGGG  CGAAACGCTTGTTGGGAAGACGGAAGGNACAAAGCGCTACAGTACTTGGCTGTCGGAAACGTGGCCCGGACTGTGCACCTTTTACGATTGGGACCAG]
[+] EMBL BX467579             [  GGCAGAATCGGCACGAGGCGACAGACGCTCCAGC AAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTA AAGATCTAGCTCCAGTCGGGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGC TTCCCGCCTTTCCGTACACTCGACCGCCTCGGATGCTGCGAATTCGGCTGGAACGACTCCA GCTAGAGTCTCGGGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTAGAGAAGAATTTGTTGCGTGCGCTAGTTTGC AAAATTTACGGTCCCAT CGCGATTGTCACCATCAAC TGGGTCAGAGAACAAACCTATCGC TCGTGCGTTTGCCTGTTCCCGGAATGTACA AGCTCGGTGGTTCGGTTTACCATCAGGAGTTGCTTGGCAGGAAAAGGGGCCGAACCGCTAGTTGGG AG CGGAAGGGACca                                                                 ]


>consensus_4061#0 GAGGCAGAATCCGCACGAGGCGACAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGC ACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAGACA AGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAA TGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAA GCTCCACGATGCTAACTGATCCGTGCGCCGCGTTCCCGCCTTTCCGTACACTCGAACGGC TCGATGCTGCGAATTCGGCTGGAACGACTCCAGGCTAGAGTCTCGGCTTAACAAACGAAT GTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTACTCT GAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACGCACC GGTGCCCCAGATCGTGAAGCCATTTGATGGCGTAGAGAAGAATTTGTTGCGTGCGCTAGT TTGCGAAAATTTCGTGCCCATACGCGATTGTCACATCGACATGGGTCAGAGACAAACCTA TCGCNTCGTGCGTTGCCTGTCCGGGAATGTACAGNGCTCGGTGGTCGGTTTACAATCAGG AGTTGCGTGCACGANACGGGCGAAACGCTTGTTGGGAAGACGGAAGGNACAAAGCGCTAC AGTACTTGGCTGTCGGAAACGTGGCCCGGACTGTGCACCTTTTACGATTGGGACCAG



consensusID : consensus_4061#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence
                              [CAAGAATCGCCCGAGGTTTTACTGCATTGCGATTACTATGTCCTGAGGTGGAGCTGCGAGAGAAAAGTGTCGAGTACTGTGCCTACCGGGGCGTGATTGGAGAACGGCCGGAAATTGTAACCGACATAATCGAGATTGTTCTCGACAAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATTGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCTTCCCGCCTTTCCGTACACTCGACCGCCTCGATGCTGCGAATTCGGCTGGAACGACTCCAGCTAGAGTCTCGGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGGCACCCAACGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTACGAGAAGAATTTGTTGCGTGCGCTAGTTTGCAAAATTTCGTCCCATCGCGATTG]

[+] EMBL AL931484             [CAAGAATCGCCCGAGGTTTTACTGCATTGCGATTACTATGTCCTGAGGTGGAGCTGCGAGAGAAAAGTGTCGAGTACTGTGCCTACCGGGGCGTGATTGGAGAACGGCCGGAAATTGTAACCGACATAATCGAGATTGTTCTCGACAAGACGCTCCAGCAAAGCAGTGAAGATATTTTGCAGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAGACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAACAATTGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGATGAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCTTCCCGCCTTTCCGTACACTCGACCGCCTCGATGCTGCGAATTCGGCTGGAACGACTCCAGCTAGAGTCTCGGCTTAACAAACGAATGTTTTTGGTGTCGCAAAATCCGGCACCCAACGTGGCATGTGCTACCGGATATTACTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACGCACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTACGAGAAGAATTTGTTGCGTGCGCTAGTTTGCAAAATTTCGTCCCATCGCGATTG]


>consensus_4061#1 CAAGAATCGCCCGAGGTTTTACTGCATTGCGATTACTATGTCCTGAGGTGGAGCTGCGAG AGAAAAGTGTCGAGTACTGTGCCTACCGGGGCGTGATTGGAGAACGGCCGGAAATTGTAA CCGACATAATCGAGATTGTTCTCGACAAGACGCTCCAGCAAAGCAGTGAAGATATTTTGC AGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAG ACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAA CAATTGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGAT GAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCTTCCCGCCTTTCCGTACACTCGACC GCCTCGATGCTGCGAATTCGGCTGGAACGACTCCAGCTAGAGTCTCGGCTTAACAAACGA ATGTTTTTGGTGTCGCAAAATCCGGCACCCAACGTGGCATGTGCTACCGGATATTACTCT GAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACGCACC GGTGCCCCAGATCGTGAAGCCATTTGATGGCGTACGAGAAGAATTTGTTGCGTGCGCTAG TTTGCAAAATTTCGTCCCATCGCGATTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4061#0      ------------------------------------------------------------
consensus_4061#1      CAAGAATCGCCCGAGGTTTTACTGCATTGCGATTACTATGTCCTGAGGTGGAGCTGCGAG 60
                                                                                  

consensus_4061#0      ------------------------------------------------------------
consensus_4061#1      AGAAAAGTGTCGAGTACTGTGCCTACCGGGGCGTGATTGGAGAACGGCCGGAAATTGTAA 120
                                                                                  

consensus_4061#0      GAGGCAGAATCCGCACGAGGC--GACA-GACGCTCCAGCAAAGCAGTGAAGATATTTTGC 57
consensus_4061#1      CCGACATAATCGAGATTGTTCTCGACAAGACGCTCCAGCAAAGCAGTGAAGATATTTTGC 180
                        * ** ****   *     *  **** ********************************

consensus_4061#0      AGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAG 117
consensus_4061#1      AGCACCTGACTGCTGAGTCTTTAGAAGATCTAGCTCAGTCGGCGATGAAGCACATAGTAG 240
                      ************************************************************

consensus_4061#0      ACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAA 177
consensus_4061#1      ACAAGCTTCAGCTGGTGGATAGGGAAATTGAAGAGCAGTACTGTCGCCTGGACATGGAAA 300
                      ************************************************************

consensus_4061#0      CAAT-GTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGAT 236
consensus_4061#1      CAATTGTTCACAGAATTGATCGATCGGTTGTCTTGCATCTCTGGGGAACCTTCCTCGGAT 360
                      **** *******************************************************

consensus_4061#0      GAAAGCTCCACGATGCTAACTGATCCGTGCGCCGCGTTCCCGCCTTTCCGTACACTCGAA 296
consensus_4061#1      GAAAGCTCCACGATGCTAACTGATCCGTGCGCCGC-TTCCCGCCTTTCCGTACACTCGAC 419
                      *********************************** *********************** 

consensus_4061#0      CGGCTCGATGCTGCGAATTCGGCTGGAACGACTCCAGGCTAGAGTCTCGGCTTAACAAAC 356
consensus_4061#1      CGCCTCGATGCTGCGAATTCGGCTGGAACGACTCCAG-CTAGAGTCTCGGCTTAACAAAC 478
                      ** ********************************** **********************

consensus_4061#0      GAATGTTTTTGGTGTCGCAAAATCCGCGCACCCAACCGTGGCATGTGCTACCGGATATTA 416
consensus_4061#1      GAATGTTTTTGGTGTCGCAAAATCCG-GCACCCAAC-GTGGCATGTGCTACCGGATATTA 536
                      ************************** ********* ***********************

consensus_4061#0      CTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACG 476
consensus_4061#1      CTCTGAAGCAGCTCGAAGCTACTGAGGGTTTGCGCATCTTTCTACAGGGAAATCTGGACG 596
                      ************************************************************

consensus_4061#0      CACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTA-GAGAAGAATTTGTTGCGTGCG 535
consensus_4061#1      CACCGGTGCCCCAGATCGTGAAGCCATTTGATGGCGTACGAGAAGAATTTGTTGCGTGCG 656
                      ************************************** *********************

consensus_4061#0      CTAGTTTGCGAAAATTTCGTGCCCATACGCGATTGTCACATCGACATGGGTCAGAGACAA 595
consensus_4061#1      CTAGTTTGC-AAAATTTCGT-CCCAT-CGCGATTG------------------------- 688
                      ********* ********** ***** ********                         

consensus_4061#0      ACCTATCGCNTCGTGCGTTGCCTGTCCGGGAATGTACAGNGCTCGGTGGTCGGTTTACAA 655
consensus_4061#1      ------------------------------------------------------------
                                                                                  

consensus_4061#0      TCAGGAGTTGCGTGCACGANACGGGCGAAACGCTTGTTGGGAAGACGGAAGGNACAAAGC 715
consensus_4061#1      ------------------------------------------------------------
                                                                                  

consensus_4061#0      GCTACAGTACTTGGCTGTCGGAAACGTGGCCCGGACTGTGCACCTTTTACGATTGGGACC 775
consensus_4061#1      ------------------------------------------------------------
                                                                                  

consensus_4061#0      AG 777
consensus_4061#1      --
                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)