These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence [CCGCGGACGCGTGGGGAAAGGCGTGCACAGGCTAGGACACGAACCGTAGCTGAGCGTTCACGCTCGCTGCTAGCTGCTGAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGCAGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCTCGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGTACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCGGGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCTTCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGATCCGCCGCATCAGCTGCTACGTGCTGAAGGTCGGCTGGGTCTGTCTCTGGGACGGCCGCTCCGACAAGTGGGAGTACGTAGCGGGCGACAGGAGCGCTAGCCCCGCGCGCCTGTTCGTGCCGACCCTGCGCACCGTCCCGCACCGGACACGCGTGCTGCGTTTCGAGCTAAACATGCGCGACCAACGGTACATCAGCGGGCTGGACGGCATCATACTGGTGGGCGGCGTGCACGAC] [+] EMBL BM585864 [CCGCGGACGCGTGGGGAAAGGCGTGCACAGGCTAGGACACGAACCGTAGCTGAGCGTTCACGCTCGCTGCTAGCTGCTGAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGCAGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCTCGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGTACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCGGGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCTTCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGATCCGCCGCATCAGCTGCTACGTGCTGAAGGTCGGCTGGGTCTGTCTCTGGGACGGCCGCTCCGACAAGTGGGAGTACGTAGCGGGCGACAGGAGCGCTAGCCCCGCGCGCCTGTTCGTGCCGACCCTGCGCACCGTCCCGCAC ] [+] EMBL BM592629 [ ccgGAGCGTACACGCTCGCTGGTAGCTGCTGAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGCAGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCTCGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGTACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCGGGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCTTCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGATCCGCCGCATCAGCTGCTACGTGCTGAAGGTCGGCTGGGTCTGTCTCTGGGACGGCCGCTCCGACAAGTGGGAGTACGTAGCGGGCGACAGGAGCGCTAGCCCCGCGCGCCTGTTCGTGCCGACCCTGCGCACCGTCCCGCACCGGACACGCGTGCTGCGTTTCGAGCTAAACATGCGCGACCAACGGTACATCAGCGGGCTGGACGGCATCATACTGGTGGGCGGCGTGCACGAC] consensusID : consensus_4064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CCGGCGACATCGAACGAAGCAGGCCAGTGGCAGTAGCTTACGACTTCCCGGCCACCGGTGGCTTGGTGCTTTGTTTTCTGTTTTGTGTGTGACCGCAAAAGGAAGGACAATCGAACGTGTCGCGCACGTCGCTTCCCTTGTCCCACTTTCCGCCTAGCGATGCCTACTACCGCCAGCCAGTGGCCGGACGCTGAGCACTGTGGCAAAGTGTGCGCGAACCTCCCTCGCTGGTAGCTGCTGAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGCAGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCTCGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGTACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCGGGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCTTCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGATCCGCCGCATCAGCTGCTAC] [+] EMBL BM578704 [CCGGCGACATCGAACGAAGCAGGCCAGTGGCAGTAGCTTACGACTTCCCGGCCACCGGTGGCTTGGTGCTTTGTTTTCTGTTTTGTGTGTGACCGCAAAAGGAAGGACAATCGAACGTGTCGCGCACGTCGCTTCCCTTGTCCCACTTTCCGCCTAGCGATGCCTACTACCGCCAGCCAGTGGCCGGACGCTGAGCACTGTGGCAAAGTGTGCGCGAACCTCCCTCGCTGGTAGCTGCTGAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGCAGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCTCGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGTACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCGGGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCTTCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGATCCGCCGCATCAGCTGCTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4064#0 ------------------------------------------------------------ consensus_4064#1 CCGGCGACATCGAACGAAGCAGGCCAGTGGCAGTAGCTTACGACTTCCCGGCCACCGGTG 60 consensus_4064#0 ------------------------------------------------------------ consensus_4064#1 GCTTGGTGCTTTGTTTTCTGTTTTGTGTGTGACCGCAAAAGGAAGGACAATCGAACGTGT 120 consensus_4064#0 ---------------------------------CCGCGGACGCGTGGGGAAAGGCGTGCA 27 consensus_4064#1 CGCGCACGTCGCTTCCCTTGTCCCACTTTCCGCCTAGCGATGCCTACT-ACCGCCAGCCA 179 * ** ** * * * * ** consensus_4064#0 CAGGCTAGGACACGA--ACCGTAGCTGAGCGTTCACG-------CTCGCTGCTAGCTGCT 78 consensus_4064#1 GTGGCCGGACGCTGAGCACTGTGGCAAAGTGTGCGCGAACCTCCCTCGCTGGTAGCTGCT 239 *** * ** ** ** ** ** ** * ** ******* ******** consensus_4064#0 GAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGC 138 consensus_4064#1 GAAGGATGAGCCGAGAGCGGCCGTTGCTCACCCCGGTCTGCTATGTCGGCGAGCGGAAGC 299 ************************************************************ consensus_4064#0 AGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCT 198 consensus_4064#1 AGTTCGTGGAGTCCATCCTGATGGCCAGCAACGAGTACGGGCCGAACCTTTCCTACAGCT 359 ************************************************************ consensus_4064#0 CGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGT 258 consensus_4064#1 CGATCAATCTGATTGGCCGGCCGTCCAACTTCCCGATCTACGGCGACCATACGGACTCGT 419 ************************************************************ consensus_4064#0 ACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCG 318 consensus_4064#1 ACCTGTTGTCCTCGTACGGCAAGTGGCCCCGGCTGGCACCGTCGTACCGGCCCGAGTTCG 479 ************************************************************ consensus_4064#0 GGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCT 378 consensus_4064#1 GGCTGGCGAGGATAGCGCCGTGCGACAATCCGCCGGTGGACGAGTTCTTCGTCGTCAGCT 539 ************************************************************ consensus_4064#0 TCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGA 438 consensus_4064#1 TCGAGCAGGCCGTCTATCCGGCCGAGATCGGCGTGTACGAAACGCTGCATCCGGGCACGA 599 ************************************************************ consensus_4064#0 TCCGCCGCATCAGCTGCTACGTGCTGAAGGTCGGCTGGGTCTGTCTCTGGGACGGCCGCT 498 consensus_4064#1 TCCGCCGCATCAGCTGCTAC---------------------------------------- 619 ******************** consensus_4064#0 CCGACAAGTGGGAGTACGTAGCGGGCGACAGGAGCGCTAGCCCCGCGCGCCTGTTCGTGC 558 consensus_4064#1 ------------------------------------------------------------ consensus_4064#0 CGACCCTGCGCACCGTCCCGCACCGGACACGCGTGCTGCGTTTCGAGCTAAACATGCGCG 618 consensus_4064#1 ------------------------------------------------------------ consensus_4064#0 ACCAACGGTACATCAGCGGGCTGGACGGCATCATACTGGTGGGCGGCGTGCACGAC 674 consensus_4064#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||