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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4065#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 895 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGAAATATGTTTATATCGGACGAATTATGCTATCGAAGCCAGCAGATTCGGGCAAACAACGCACTGCTTTTGGCTCTGTATGAAGCAATACATTTAAATCGAAATTTCATAACCACATTAGCGCATACACAAGCAGATTCTACTCCGCCTTCACCGTGCAATACGTTGAATATAAATGATGGATCGCCTGACTTATCCGCGGCTGCCATTCTAGATGCCTCACATTATTCTACTAATTTGTTTGTGGCCCTATTTCAATACTGCTCAATCGTGATGCAGGATCACAAAAGTGAATTAAGTTCAACTAATTTGAAACTTTGTTTGTTGATTTTGACATGCATTGCTGAAGATCAATATGCGAACTCAATGATGCATGACACCAACCTTACGTTCAAAGTTTCATTGCATCGAGCTCATATGAGACATAGGAAATTGACATCAGAAAAGGTTTCTAAACCACAACCGCTGGCAAACACATTATTAGATCTTTTAGTGGAGTTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTTTATCTTTTATGCGTTGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCGTACGAATAGCATATCACTGGAAGGATTTATGGACGGCAATAATAAGTTTATTAAAATTTCTCATCTACCAAGAACAAAATCTCATGAAGAGATGTAATATATTTGATTTAGCATTACAGGTTATTAATATTTTCAATCTTTTTATAACTTATGGGGACACGTTTCTTGCAACAACCAACAGCTATGATGAGCTTTATTACGAATTAAACCGCGAAGAAAAAGTGNTCTGTGAATTACATGCCATGGNTCTACGATATGCTTCNATGCAAGA]
[+] EMBL BM584577 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAATATGTTTATATCGGACGAATTATGCTATCGAAGCCAGCAGATTCGGGCAAACAACGCACTGCTTTTGGCTCTGTATGAAGCAATACATTTAAATCGAAATTTCATAACCACATTAGCGCATACACAAGCAGATTCTACTCCGCCTTCACCGTGCAATACGTTGAATATAAATGATGGATCGCCTGACTTATCCGCGGCTGCCATTCTAGATGCCTCACATTATTCTACTAATTTGTTTGTGGCCCTATTTCAATACTGCTCAATCGTGATGCAGGATCACAAAAGTGAATTAAGTTCAACTAATTTGAAACTTTGTTTGTTGATTTTGACATGCATTGCTGAAGATCAATATGCGAACTCAATGATGCATGACACCAACCTTACGTTCAAAGTTTCATTGCATCGAGCTCATATGAGACATAGGAAATTGACATCAGAAAAGGTTTCTAAACCACAACCGCTGGCAAACACATTATTAGATCTTTTAGTGGAGTTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTTTATCTTTTATGCGTTGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCGTACGAATAGCATATCACTGGAAGGATTTATGGACGGCAATAATAAGT ]
[+] EMBL BX623683 [ GATCGCCTGACTTATCCGCGGCTGCCATTCTAGATGCCTCACATTATTCTACTAATTTGTTTGTGGCCCTATTTCAATACTGCTCAATCGTGATGCAGGATCACAAAAGTGAATTAAGTTCAACTAATTTGAAACTTTGTTTGTTGATTTTGACATGCATTGCTGAAGATCAATATGCGAACTCAATGATGCATGACACCAACCTTACGTTCAAAGTTTCATTGCATCGAGCTCATATGAGACATAGGAAATTGACATCAGAAAAGGTTTCTAAACCACAACCGCTGGCAAACACATTATTAGATCTTTTAGTGGAGTTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTTTATCTTTTATGCGTTGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCGTACGAATAGCATATCACTGGAAGGATTTATGGACGGCAATAATAAGTTTATTAAAATTTCTCATCTACCAAGAACAAAATCTCATGAAGAGATGTAATATATTTGATTTAGCATTACAGGTTATTAATATTTTCAATCTTTTTATAACTTATGGGGACACGTTTCTTGCAACAACCAACAGCTATGATGAGCTTTATTACGAATTAAACCGCGAAGAAAAAGTGNTCTGTGAATTACATGCCATGGNTCTACGATATGCTTCNATGCAAGA]
consensusID : consensus_4065#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[CCGTGAAAATTTTCAGGAGGTTTCTTCAGATATTATCGTATATTTTTGCATAAAATTAACTTAGCTCAAAATTTTTCATGTGTTTATAAAGCTGACTAAATATCCTTTATAAAATGTCTAAACTTATCAAAATCGGTTCATATTTGAAAAAGTTACAAAGGTTCAAAGTTTTCCAAAAAAAATTCTGCGTTTTTTTAACAAATCTCGACTTTGAGAGGTGTTTTCTAAAGAACCAGAACAGATACCGAGCTCATATTTGGTATTTTTCTTAGTTTAACCCTTAGTATTAAAACCTATTATTTGGAATTGCGCTATTACAAAGTTGATTTTTTGAATTTCATCCCGGCAAATGCATTGGCTGCTTTTCCCCTGATACCATGTTGACTGTTGAACTATCAGATTATATGCTGATGCTTTGGAGTCACGTTGGTCAACATGGGACCAGAATTTCCAATGCAGTTCAGCGTGTGCAACATTTTTGTAACATAACTATGTACTATTTTAAAGTAATTAAAAAAATGCTTTTGTATTTGCAGATCTTTTTAGCGGAGCTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTTTATCTTTTATGCGATGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCG]
[+] EMBL BM640879 [CCGTGAAAATTTTCAGGAGGTTTCTTCAGATATTATCGTATATTTTTGCATAAAATTAACTTAGCTCAAAATTTTTCATGTGTTTATAAAGCTGACTAAATATCCTTTATAAAATGTCTAAACTTATCAAAATCGGTTCATATTTGAAAAAGTTACAAAGGTTCAAAGTTTTCCAAAAAAAATTCTGCGTTTTTTTAACAAATCTCGACTTTGAGAGGTGTTTTCTAAAGAACCAGAACAGATACCGAGCTCATATTTGGTATTTTTCTTAGTTTAACCCTTAGTATTAAAACCTATTATTTGGAATTGCGCTATTACAAAGTTGATTTTTTGAATTTCATCCCGGCAAATGCATTGGCTGCTTTTCCCCTGATACCATGTTGACTGTTGAACTATCAGATTATATGCTGATGCTTTGGAGTCACGTTGGTCAACATGGGACCAGAATTTCCAATGCAGTTCAGCGTGTGCAACATTTTTGTAACATAACTATGTACTATTTTAAAGTAATTAAAAAAATGCTTTTGTATTTGCAGATCTTTTTAGCGGAGCTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTTTATCTTTTATGCGATGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4065#0 ---------CCGCCCACGCGTCCGCCCACGCGTCCGGAAATATGTTTATATCGGACGAAT 51
consensus_4065#1 CCGTGAAAATTTTCAGGAGGTTTCTTCAGATATTATCGTATATTTTTGCATAAAATTAAC 60
* ** ** * **** *** ** * **
consensus_4065#0 TATGCTATCGAAGCCAGCAGATTCGGGCAAA--CAACGCACTGCTTTTGGCTC--TGTAT 107
consensus_4065#1 TTAGCT-CAAAATTTTTCATGTGTTTATAAAGCTGACTAAATATCCTTTATAAAATGTCT 119
* *** ** ** * *** ** * * ** *** *
consensus_4065#0 GAAGCAATACATTTAAATCGAAATTTCATAA--CCACA-----TTAGCGCATACACAAGC 160
consensus_4065#1 AAACTTATCAAAATCGGTTCATATTTGAAAAAGTTACAAAGGTTCAAAGTTTTCCAAAAA 179
** ** * * * * **** * ** *** * * * * * **
consensus_4065#0 AGATTCTACTCCGCCTTCACCGTGCAATACGTTGA-ATATAAATGATGGATCGCCTGA-C 218
consensus_4065#1 AAATTCTGCGTTTTTTTAACAAATCTCGACTTTGAGAGGTGTTTTCTAAAGAACCAGAAC 239
* ***** * ** ** * ** **** * * * * * ** ** *
consensus_4065#0 TTATCCGCGGCTGCCATTCTAGATGCCTCACATTATTCTACTAATTTGTTTGTGGCCCTA 278
consensus_4065#1 AGATACCGAGCTCATATTTGGTATTTTTC---TTAGTTTAACCCTTAGTATTAAAACCTA 296
** * *** *** ** ** *** * ** ** ** * ****
consensus_4065#0 TT--TCAATACTGCTCAATCGTGATGCAGGATCACAAAAGTGAATTAAGTTCAACTAATT 336
consensus_4065#1 TTATTTGGAATTGCGCTATTACAAAGTTGATTTTTTGAATTTCATCCCGGCAAATGCATT 356
** * * *** * ** * * * * ** * ** * ** ***
consensus_4065#0 TGAAACTTTGTTTGTTGATTTTGACATGCATTGCTGAAG-ATCA----ATATGCGAACTC 391
consensus_4065#1 GGCTGCTTT-TCCCCTGATACC-ATGTTGACTGTTGAACTATCAGATTATATGCTGATGC 414
* **** * **** * * * ** **** **** ****** * *
consensus_4065#0 AATGATG-CATGACACCAACCTTACGTTCAAAGTTTC-ATTGCA-TCGAGCTCATATGAG 448
consensus_4065#1 TTTGGAGTCACGTTGGTCAACATGGGACCAGAATTTCCAATGCAGTTCAGCGTGTGCAAC 474
** * ** * * * * * ** * **** * **** * *** * *
consensus_4065#0 ACATAGGAAATTGACATCAGAAAAGGTTTCTAAACCAC-AACCGCTGGCAAACACATTAT 507
consensus_4065#1 ATTTTTGTAACATA-ACTATGTACTATTTTAAAGTAATTAAAAAAATGCTTTTGTATTTG 533
* * * ** * * * * *** ** * ** ** ***
consensus_4065#0 TAGATCTTTT-AGTGGAGTTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTT 566
consensus_4065#1 CAGATCTTTTTAGCGGAGCTCATCGTTTCACATTTGCTGAAAAAGTTTCCTATAGAGCTT 593
********* ** **** *****************************************
consensus_4065#0 TATCTTTTATGCGTTGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCGTA 626
consensus_4065#1 TATCTTTTATGCGATGGAATAATACATCGCGTAATTATCTACCAAAAACGATGCCGCG-- 651
************* ********************************************
consensus_4065#0 CGAATAGCATATCACTGGAAGGATTTATGGACGGCAATAATAAGTTTATTAAAATTTCTC 686
consensus_4065#1 ------------------------------------------------------------
consensus_4065#0 ATCTACCAAGAACAAAATCTCATGAAGAGATGTAATATATTTGATTTAGCATTACAGGTT 746
consensus_4065#1 ------------------------------------------------------------
consensus_4065#0 ATTAATATTTTCAATCTTTTTATAACTTATGGGGACACGTTTCTTGCAACAACCAACAGC 806
consensus_4065#1 ------------------------------------------------------------
consensus_4065#0 TATGATGAGCTTTATTACGAATTAAACCGCGAAGAAAAAGTGNTCTGTGAATTACATGCC 866
consensus_4065#1 ------------------------------------------------------------
consensus_4065#0 ATGGNTCTACGATATGCTTCNATGCAAGA 895
consensus_4065#1 -----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||