These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 892 fasta sequence [GAATAATAAAATTACGTTTAAGATCACTCTTACACGTCACAGAACTTTATTTGCAATTTACAAACATAAACCAAACATTTACACACAATCGCAAAACAAAATATATCCATGGACAGTCGATTACGGGGATCCAAACAAGCTTAGCAATACTAAAATACTAAAAAGATGTAATACCGAAATAAAACCTGAATTGTTCACCTTCACTGAGAGGTATGTCAGTAGTGACTGTAGTACAGCAACTAAAAGATTCATACAAGCAAACGAGAAACACAAAATCTGTTGTTATCATGTTATAACAACATTCACCTTCTGCCCTGACGCTACCAATACTAGCAGAATCTCTTTGGCAATTAGCAGCAAAAACACTTTTCAAGAAACACTAGCGATAGAAAACGTAGCGTGCCACATCGTACGCTTTGCGTGCGATCGATCGCTTGCGCA-CAGCAGGGTCAGCAACCTGCTCGAACTTGTCCTCATTGCGCGCATAGTACGTTGCCGTATCCTTCTCCAGCTGGGCAATCTTTTCCGGCCGCACCTCAACCATCGGCAGGAACTCGGTAAGGTACGGATTGAAACGGAAATAATGACCGGCCGGTAGCAGATCGCTCAGCACCGTGTGCGCCGCTTCCGTGTCGGTGGCCGAATCGAGAATACGCAGGAACTTTGTCTTCCACGAGCTGGACAACGAAGCTTGGTCGAGTATTTTACGGCTTATAATTTTTTGACCATCGTTCGATTTGCCGCGCGTTCGTCCCGTACCGAACGACACCACACACTGGATGCGATCGTTCGGCCACAGACATTTGGCTTCGTGGATGGCCACGGCGGTAGGATTGTTGTACAGTATGCCACCGTCCTGATGCAGCTGACCGTTCAGCGGGAAGTCACCCGG] [+] EMBL CNS09FC0 [GAATAATAAAATTACGTTTAAGATCACTCTTACACGTCACAGAACTTTATTTGCAATTTACAAACATAAACCAAACATTTACACACAATCGCAAAACAAAATATATCCATGGACAGTCGATTACGGGGATCCAAACAAGCTTAGCAATACTAAAATACTAAAAAGATGTAATACCGAAATAAAACCTGAATTGTTCACCTTCACTGAGAGGTATGTCAGTAGTGACTGTAGTACAGCAACTAAAAGATTCATACAAGCAAACGAGAAACACAAAATCTGTTGTTATCATGTTATAACAACATTCACCTTCTGCCCTGACGCTACCAATACTAGCAGAATCTCTTTGGCAATTAGCAGCAAAAACACTTTTCAAGAAACACTAGCGATAGAAAACGTAGCGTGCCACATCGTACGCTTTGCGTGCGATCGATCGCTTGCGCA CAGCAGGGTCAGCAACCTGCTCGAACTTGTCCTCATTGCGCGCATAGTACGTTGCCGTATCCTTCTCCAGCTGGGCAATCTTTTCCGGCCGCACCTCAACCATCGGCAGGAACTCGGTAAGGTACGGATTGAAACGGAAATAATGACCGGCCGGTAGCA ] [-] EMBL BM610973 [ TGGCAATTAGCAGCAAAAACACTTTTCAAGAAACACTAGCGATAGAAAACGTAGCGAGCCACATCGTACGCTTTGCGTGCGATCGATCGCTTGCGCAGCAGCA GGTCAGCAACCTGCTCGAACTTGTCCTCATTGCGCGCATAGTACATTGCCGTATCCTTCTCCAGCTGGGCAATCTTTTCCGGCCGCACCTCAACCATCGACAGGAACTCGGTAAGGTACGGATTGAAACGGAAATAGTGACCGGCCGGTAGCAGATCGCTCAGCACCGTGTGCGCCGCTTCCGTGTCGGTGGCCGAATCGAGAATACGCAGGAACTTTGTCTTCCACGAGCTGGACAACGAAGCTTGGTCGAGTATTTTACGGCTTATAATTTTTTGACCATCGTTCGATTTGCCGCGCGTTCGTCCCGTACCGAACGACACCACACACTGGATGCGATCGTTCGGCCACAGACATTTGGCTTCGTGGATGGCCACGGCGGTAGGATTGTTGTACAGTATGCCACCGTCCTGATGCAGCTGACCGTTCAGCGGGAAGTCACCCGG] consensusID : consensus_4072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [TAGTGCGCTTTGTGTGCGATTGATCGCTTGCGCAGCAGCAGGTCAGCAACCTGCTCGACCTTGTCCTCATTGCGCGCATAGTACATTGCAGTATCCTTCTCCATCTGGGCAATCTGTTGCGGCCGCACCTCAACCATCGACAGGAACTCGGTAAGGTACGGAGTGAAGCGGAAATAGTGACCGGCCGGTAGCAGATCGGTCAGCACCGTGTGCACCGCTTCGGTGTCGGTGGCCGAATCGAGAATAGGCAGGAGCTTTGTCTTGCACGAGCTGGACAACGAAGCCGGACGCGTGGGCGG] [-] EMBL BM587198 [TAGTGCGCTTTGTGTGCGATTGATCGCTTGCGCAGCAGCAGGTCAGCAACCTGCTCGACCTTGTCCTCATTGCGCGCATAGTACATTGCAGTATCCTTCTCCATCTGGGCAATCTGTTGCGGCCGCACCTCAACCATCGACAGGAACTCGGTAAGGTACGGAGTGAAGCGGAAATAGTGACCGGCCGGTAGCAGATCGGTCAGCACCGTGTGCACCGCTTCGGTGTCGGTGGCCGAATCGAGAATAGGCAGGAGCTTTGTCTTGCACGAGCTGGACAACGAAGCCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4072#0 GAATAATAAAATTACGTTTAAGATCACTCTTACACGTCACAGAACTTTATTTGCAATTTA 60 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CAAACATAAACCAAACATTTACACACAATCGCAAAACAAAATATATCCATGGACAGTCGA 120 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 TTACGGGGATCCAAACAAGCTTAGCAATACTAAAATACTAAAAAGATGTAATACCGAAAT 180 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 AAAACCTGAATTGTTCACCTTCACTGAGAGGTATGTCAGTAGTGACTGTAGTACAGCAAC 240 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 TAAAAGATTCATACAAGCAAACGAGAAACACAAAATCTGTTGTTATCATGTTATAACAAC 300 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 ATTCACCTTCTGCCCTGACGCTACCAATACTAGCAGAATCTCTTTGGCAATTAGCAGCAA 360 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 AAACACTTTTCAAGAAACACTAGCGATAGAAAACGTAGCGTGCCACATCGTACGCTTTGC 420 consensus_4072#1 -----------------------------------------------TAGTGCGCTTTGT 13 * ** ******* consensus_4072#0 GTGCGATCGATCGCTTGCGCA-CAGCAGGGTCAGCAACCTGCTCGAACTTGTCCTCATTG 479 consensus_4072#1 GTGCGATTGATCGCTTGCGCAGCAGCAGG-TCAGCAACCTGCTCGACCTTGTCCTCATTG 72 ******* ************* ******* **************** ************* consensus_4072#0 CGCGCATAGTACGTTGCCGTATCCTTCTCCAGCTGGGCAATCTTTTCCGGCCGCACCTCA 539 consensus_4072#1 CGCGCATAGTACATTGCAGTATCCTTCTCCATCTGGGCAATCTGTTGCGGCCGCACCTCA 132 ************ **** ************* *********** ** ************* consensus_4072#0 ACCATCGGCAGGAACTCGGTAAGGTACGGATTGAAACGGAAATAATGACCGGCCGGTAGC 599 consensus_4072#1 ACCATCGACAGGAACTCGGTAAGGTACGGAGTGAAGCGGAAATAGTGACCGGCCGGTAGC 192 ******* ********************** **** ******** *************** consensus_4072#0 AGATCGCTCAGCACCGTGTGCGCCGCTTCCGTGTCGGTGGCCGAATCGAGAATACGCAGG 659 consensus_4072#1 AGATCGGTCAGCACCGTGTGCACCGCTTCGGTGTCGGTGGCCGAATCGAGAATAGGCAGG 252 ****** ************** ******* ************************ ***** consensus_4072#0 AACTTTGTCTTCCACGAGCTGGACAACGAAGCTTGGTCGAGTATTTTACGGCTTATAATT 719 consensus_4072#1 AGCTTTGTCTTGCACGAGCTGGACAACGAAGCC-GGACGCGTGGGCGG------------ 299 * ********* ******************** ** ** ** consensus_4072#0 TTTTGACCATCGTTCGATTTGCCGCGCGTTCGTCCCGTACCGAACGACACCACACACTGG 779 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 ATGCGATCGTTCGGCCACAGACATTTGGCTTCGTGGATGGCCACGGCGGTAGGATTGTTG 839 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 TACAGTATGCCACCGTCCTGATGCAGCTGACCGTTCAGCGGGAAGTCACCCGG 892 consensus_4072#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||