cluster # 4084

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Anopheles gambiae
cluster # 4084 cluster # 4084 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4084#0 length = 714 sequences # 2

consensus_4084#1 length = 588 sequences # 1

consensusID : consensus_4084#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 714
fasta sequence

                              [ACATTGCGGGAATTGCGGCGAAACGGGTANGATCGGGTAAGATCTNGTTACATCGTCGGGCTCG-ATCCCGCCTCGCCACTGTTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGACGATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAACATTGGCCAGGCCGACTACTATCCTAACGGCGGTGTTCGACAGCCGGGCTGCGGATTCAGCCTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGATTAAGCAACTATTACGCCCGGCGGTGCGATGGTATCGCGAACCTTGGGCCGACCTGTTCCACCGATCGGACGGTGCTGGGCGGAATGATCTGGAAGTCGTCNAAACCNGGCANGCGTGTATTACATCTCGACCGCCCCCGANCGAGCCATTCCCTTNCCAGCGGAACGGTAGAATTGCGACNAAGCGCCTNCCTGGATCCCTTCTGCTGCTTTCACTCGCCNTCNACGTACATACGGATCGCTAAATCGAAGCTAAAATACAAAATATACCAAAAAAACACGACACATAACCCATCTGAGGTGATGTACGGTCGGAATGCTTTTCCAAATTCCGGTTGGCCCCCCGGAAAGCAAAGCTTCCAAATTAATTTGGAACGCCCGAAAAAAANGGGTTTGGGGGCACAAGAGAGNGAGAGAGACNC]

[+] EMBL BX619632             [ACATTGCGGGAATTGCGGCGAAACGGGTANGATCGGGTAAGATCTNGTTACATCGTCGGGCTCG ATCCCGCCTCGCCACTGTTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGACGATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAACATTGGCCAGGCCGACTACTATCCTAACGGCGGTGTTCGACAGCCGGGCTGCGGATTCAGCCTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGATTAAGCAACTATTACGCCCGGCGGTGCGATGGTATCGCGAACCTTGGGCCGACCTGTTCCACCGATCGGACGGTGCTGGGCGGAATGATCTGGAAGTCGTCNAAACCNGGCANGCGTGTATTACATCTCGACCGCCCCCGANCGAGCCATTCCCTTNCCAGCGGAACGGTAGAATTGCGACNAAGCGCCTNCCTGGATCCCTTCTGCTGCTTTCACTCGCCNTCNACGTACATACGGATCGCTAAATCGAAG                                                                                                                                                                          ]
[+] EMBL BX468290             [                                                 agcagaatcGGCACGTAGGCCGCCTCGCCACTGTTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGACGATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAACATTGGCCAGGCCGACTACTATCCTAACGGCGGTGTTCGACAGCCGGGCTGCGGATTCAGCCTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGA TAAGCAACTATTACGCCCGGCGGTGCGATGGTATCGCGAACCTTGGGCCGACCTGTTCCACCGATCGGACGGTGCTGGGCGGAATGATCTGGAAGTCGTCGAAACC GGCAGGCGTGTATTACATCTCGACCG  CCCGAACGAGCCATT CCTTCGCAGCGGAACGGTAGAATTGCGACGAAGCGCCT CCTGGAT CCTTCTGCTGCTTTCACTCGCC TCGACGTACATACGGATCGCTTAATCGAAGCTAAAATACAAAATATACCAAAAAAACACGACACATAACCCATCTGAGGTGATGTACGGTCGGAATGCTTTTCCAAATTCCGGTTGGCCCCCCGGAAAGCAAAGCTTCCAAATTAATTTGGAACGCCCGAAAAAAANGGGTTTGGGGGCACAAGAGAGNGAGAGAGACNC]




>consensus_4084#0
ACATTGCGGGAATTGCGGCGAAACGGGTANGATCGGGTAAGATCTNGTTACATCGTCGGG
CTCGATCCCGCCTCGCCACTGTTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGAC
GATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAAC
ATTGGCCAGGCCGACTACTATCCTAACGGCGGTGTTCGACAGCCGGGCTGCGGATTCAGC
CTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGATTAAGCAA
CTATTACGCCCGGCGGTGCGATGGTATCGCGAACCTTGGGCCGACCTGTTCCACCGATCG
GACGGTGCTGGGCGGAATGATCTGGAAGTCGTCNAAACCNGGCANGCGTGTATTACATCT
CGACCGCCCCCGANCGAGCCATTCCCTTNCCAGCGGAACGGTAGAATTGCGACNAAGCGC
CTNCCTGGATCCCTTCTGCTGCTTTCACTCGCCNTCNACGTACATACGGATCGCTAAATC
GAAGCTAAAATACAAAATATACCAAAAAAACACGACACATAACCCATCTGAGGTGATGTA
CGGTCGGAATGCTTTTCCAAATTCCGGTTGGCCCCCCGGAAAGCAAAGCTTCCAAATTAA
TTTGGAACGCCCGAAAAAAANGGGTTTGGGGGCACAAGAGAGNGAGAGAGACNC

consensusID : consensus_4084#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [TTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGACGATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAACATTGGCCAGGCCGACTACTATCCTAACGGCGGCGTTCGACAGCCGGGCTGCGGATTCAGCCTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGATAAGCAACTATTACGCCCGGCGGTGCGATGGCATCGCGAACCTTGGGCCGACCTGTTCCACCGATCGGACGGTGCTGGGCGGAATGATCTGGAAGTCGTCGAAACCGGCAGGCGTGTATTACATCTCGACCGCCCCGAACGAGCCATTCCTTCGCAGCGGAACGGTAGAATTGCGACGAAGCGCCTCCTGGATCCTTCTGCTGCTTTCACTCGCCTCGACGTACATACGGATCGCTTAATCGAAGCTAAAATACAACATATATCAAAAAAACACACACATAACCCATCTGAGTGATGTACGTCGAATGCTTTTCAATCGTGCCCGACACTCATATGACCAAAGTGGAAATACCAACAAACGGAGAAGATTACGCCGA]

[+] EMBL BX622874             [TTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGACGATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAACATTGGCCAGGCCGACTACTATCCTAACGGCGGCGTTCGACAGCCGGGCTGCGGATTCAGCCTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGATAAGCAACTATTACGCCCGGCGGTGCGATGGCATCGCGAACCTTGGGCCGACCTGTTCCACCGATCGGACGGTGCTGGGCGGAATGATCTGGAAGTCGTCGAAACCGGCAGGCGTGTATTACATCTCGACCGCCCCGAACGAGCCATTCCTTCGCAGCGGAACGGTAGAATTGCGACGAAGCGCCTCCTGGATCCTTCTGCTGCTTTCACTCGCCTCGACGTACATACGGATCGCTTAATCGAAGCTAAAATACAACATATATCAAAAAAACACACACATAACCCATCTGAGTGATGTACGTCGAATGCTTTTCAATCGTGCCCGACACTCATATGACCAAAGTGGAAATACCAACAAACGGAGAAGATTACGCCGA]




>consensus_4084#1
TTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGACGATGCACAGTACGTGGAGATT
ATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAACATTGGCCAGGCCGACTACTAT
CCTAACGGCGGCGTTCGACAGCCGGGCTGCGGATTCAGCCTTACTTGCAGCCATCAACGC
GCGGTGGACTTTTTCAAGGAATCGCTCAAGATAAGCAACTATTACGCCCGGCGGTGCGAT
GGCATCGCGAACCTTGGGCCGACCTGTTCCACCGATCGGACGGTGCTGGGCGGAATGATC
TGGAAGTCGTCGAAACCGGCAGGCGTGTATTACATCTCGACCGCCCCGAACGAGCCATTC
CTTCGCAGCGGAACGGTAGAATTGCGACGAAGCGCCTCCTGGATCCTTCTGCTGCTTTCA
CTCGCCTCGACGTACATACGGATCGCTTAATCGAAGCTAAAATACAACATATATCAAAAA
AACACACACATAACCCATCTGAGTGATGTACGTCGAATGCTTTTCAATCGTGCCCGACAC
TCATATGACCAAAGTGGAAATACCAACAAACGGAGAAGATTACGCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4084#0      ACATTGCGGGAATTGCGGCGAAACGGGTANGATCGGGTAAGATCTNGTTACATCGTCGGG 60
consensus_4084#1      ------------------------------------------------------------
                                                                                  

consensus_4084#0      CTCGATCCCGCCTCGCCACTGTTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGAC 120
consensus_4084#1      ---------------------TTTCGGCTGAAGAAACCGGACGAGCGGCTGTCGGCCGAC 39
                                           ***************************************

consensus_4084#0      GATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAAC 180
consensus_4084#1      GATGCACAGTACGTGGAGATTATACACACGAACGGCAAAGCGTTGGGCTTCTTCAGCAAC 99
                      ************************************************************

consensus_4084#0      ATTGGCCAGGCCGACTACTATCCTAACGGCGGTGTTCGACAGCCGGGCTGCGGATTCAGC 240
consensus_4084#1      ATTGGCCAGGCCGACTACTATCCTAACGGCGGCGTTCGACAGCCGGGCTGCGGATTCAGC 159
                      ******************************** ***************************

consensus_4084#0      CTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGATTAAGCAA 300
consensus_4084#1      CTTACTTGCAGCCATCAACGCGCGGTGGACTTTTTCAAGGAATCGCTCAAGAT-AAGCAA 218
                      ***************************************************** ******

consensus_4084#0      CTATTACGCCCGGCGGTGCGATGGTATCGCGAACCTTGGGCCGACCTGTTCCACCGATCG 360
consensus_4084#1      CTATTACGCCCGGCGGTGCGATGGCATCGCGAACCTTGGGCCGACCTGTTCCACCGATCG 278
                      ************************ ***********************************

consensus_4084#0      GACGGTGCTGGGCGGAATGATCTGGAAGTCGTCNAAACCNGGCANGCGTGTATTACATCT 420
consensus_4084#1      GACGGTGCTGGGCGGAATGATCTGGAAGTCGTCGAAACCGG-CAGGCGTGTATTACATCT 337
                      ********************************* ***** * ** ***************

consensus_4084#0      CGACCGCCCCCGANCGAGCCATTCCCTTNCCAGCGGAACGGTAGAATTGCGACNAAGCGC 480
consensus_4084#1      CGACCGCCCC-GAACGAGCCATTCC-TTCGCAGCGGAACGGTAGAATTGCGACGAAGCGC 395
                      ********** ** *********** **  *********************** ******

consensus_4084#0      CTNCCTGGATCCCTTCTGCTGCTTTCACTCGCCNTCNACGTACATACGGATCGCTAAATC 540
consensus_4084#1      CTCC-TGGATCC-TTCTGCTGCTTTCACTCGCCT-CGACGTACATACGGATCGCTTAATC 452
                      ** * ******* ********************  * ****************** ****

consensus_4084#0      GAAGCTAAAATACAAAATATACCAAAAAAACACGACACATAACCCATCTGAGGTGATGTA 600
consensus_4084#1      GAAGCTAAAATACAACATATATCAAAAAAACAC-ACACATAACCCATCTGAG-TGATGTA 510
                      *************** ***** *********** ****************** *******

consensus_4084#0      CGGTCGGAATGCTTTTCCAAATTCCGGTTGGCCCCCCGGAAAGCAAAGCTTCCAAATTAA 660
consensus_4084#1      CGTC--GAATGCTTTTC--AATCGTGCCCGACACTCATATGACCAAAGTGGAAATACCAA 566
                      **    ***********  ***   *   * * * *     * *****     * *  **

consensus_4084#0      TTTGGAACGCCCGAAAAAAANGGGTTTGGGGGCACAAGAGAGNGAGAGAGACNC 714
consensus_4084#1      C---AAACG---GAGAAGATTACGCCGA-------------------------- 588
                           ****   ** ** *    *