These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CCGATTGATGTGCCGTAGCAGAATCACAAAGAAGAGATTGATGCACTCTTCTGTCACGGTTTGCGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGTTGCAGTGCAGTTACCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTAGAATCTGCGTGCGGTAGATTCCGGTTCATCACTGCTCCTCCGCCCGGCTCCTGCGCTGTCGGAACAGTGCACTGAGAGTCCCGTAAATTTGAAAGAAATGTCCGTTGTCAGCTTAAACAGAATGTTCCGGGGGAAGATTCGCACCAACACCTGCCGTATCGTAGTGCTCACCTCACTCGTGTGGCTGCTGATCGATGTGATACTGATAGTGAAATATGCCGACTGTCCCAGTACCGGTGGCGGATCAAGCTGGCTCTGCAAACGGAACGGCGACGGCTATGATGTTGAGGTGCCAAATGCAGCTCGCCAGTCGCAGCAACAACGCCGGGCGGCTGCCCCCGAGGACGACGATCCCATCGTGGACGCGGAGGAGATTGACACCAACTCGAACAACTTCGGTGACCCGGGCGGCTACGGTGGCGGCGGCGGCGGCGGGGGTCGCGATGCCGACAGTTCAATGCCTCGCACGTACCGGCCGCAGGAGCTGAAGAAG] [+] EMBL BM589651 [CCGATTGATGTGCCGTAGCAGAATCACAAAGAAGAGATTGATGCACTCTTCTGTCACGGTTTGCGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGTTGCAGTGCAGTTACCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTAGAATCTGCGTGCGGTAGATTCCGGTTCATCACTGCTCCTCCGCCCGGCTCCTGCGCTGTCGGAACAGTGCACTGAGAGTCCCGTAAATTTGAAAGAAATGTCCGTTGTCAGCTTAAACAGAATGTTCCGGGGGAAGATTCGCACCAACACCTGCCGTATCGTAGTGCTCACCTCACTCGTGTGGCTGCTGATCGATGTGATACTGATAGTGAAATATGCCGACTGTCCCAGTACCGGTGGCGGATCAAGCTGGCTCTGCAAACGGAACGGCGACGGCTATGATGTTGAGGTGCCAAATGCAGCTCGCCAGTCGCAGCAACAACGCCGGGCGGCTGCCCCCGAGGACGACGATCCCATCGTGGACGCGGAGGAGATTGACACCAACTCGAACAACTTCGGTGACCCGGGCGGCTACGGTGGCGGCGGCGGCGGCGGGGGTCGCGATGCCGACAGTTCAATGCCTCGCACGTACCGGCCGCAGGAGCTGAAGAAG] consensusID : consensus_4089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CCGCCCACGCGTCCGGTGCCGTGGCGTTACTTGGGTTTTTTAGTTTACCAAATTGGTTCGTGTCGTGTAGGTTGTGCGTGCAGTAGGTGCGCTGCCGGAAAATGCAGTAAATACCAGCAGCAAAAGTGTTTCCTTCCTTAGCGCAATCGAAATAGCATGTCAACATTTTAAAGATACACAACTATTCAAAAAGCATAAAATGTGAATCGCGACTGTTTTTTGTTTTCTTCAATCCAGTGCAGTGTGTTTGTTTTGTACGTAAATCGTGTGTATATTAGTTTCGCTGTGCCTATATGAAGTATGAAATGTGTAACTATGTTACTAGTTGAAGTGCAATAATCGTTAGCAGTATTGATGTGCCGTAGCAGAATCTCAGAGAAGAGATTGATGCACTCTTCTGCCACGGTTTGCGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGTTGCAGTGCAGCTACCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTGCACGTGTGCGCGTAGTGAATCTGCGTGAAGGTAGATTCCGGTTCATCACTGCTCCTCCG] [+] EMBL BM656281 [CCGCCCACGCGTCCGGTGCCGTGGCGTTACTTGGGTTTTTTAGTTTACCAAATTGGTTCGTGTCGTGTAGGTTGTGCGTGCAGTAGGTGCGCTGCCGGAAAATGCAGTAAATACCAGCAGCAAAAGTGTTTCCTTCCTTAGCGCAATCGAAATAGCATGTCAACATTTTAAAGATACACAACTATTCAAAAAGCATAAAATGTGAATCGCGACTGTTTTTTGTTTTCTTCAATCCAGTGCAGTGTGTTTGTTTTGTACGTAAATCGTGTGTATATTAGTTTCGCTGTGCCTATATGAAGTATGAAATGTGTAACTATGTTACTAGTTGAAGTGCAATAATCGTTAGCAGTATTGATGTGCCGTAGCAGAATCTCAGAGAAGAGATTGATGCACTCTTCTGCCACGGTTTGCGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGTTGCAGTGCAGCTACCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTGCACGTGTGCGCGTAGTGAATCTGCGTGAAGGTAGATTCCGGTTCATCACTGCTCCTCCG] consensusID : consensus_4089#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [CCGCCCCCGAGGACGACGATCCCATCGTGGACGCGGTAGGAGATTGACACCAGACTCTAACAACTTCTGCGACCCGGGCGGCTACGGTGGCGGCTGCGGGGGTCGCGATGCCGACAGTTCAATGCCTCGCACGTATCGGCCGCAGGATCTGAAGAAGTGGCGGCAGGCACCAACGGTCGCCGAAAACTATGGTCGTCCCGGTGAAATGGGTAAACCAGTAAAAATTCCAGCGAACCATCAGGAGCTGATGAAGGAAAAGTTCAAAGAAAATCAATTCAATCTCCTCTCCAGTGACATGATCTGGGTGAATCTATCGCTCACCGATGTGCGCCATCACGACTGCAAAAAGAAACGCTACCCGGCGAAGCTGCCAACGACCTCCATTGTGATCGTGTTCCACAACGAAGCCTGGAGCACGCTGCTCCGCACGATATGGAGTGTGAT] [+] EMBL BM607679 [CCGCCCCCGAGGACGACGATCCCATCGTGGACGCGGTAGGAGATTGACACCAGACTCTAACAACTTCTGCGACCCGGGCGGCTACGGTGGCGGCTGCGGGGGTCGCGATGCCGACAGTTCAATGCCTCGCACGTATCGGCCGCAGGATCTGAAGAAGTGGCGGCAGGCACCAACGGTCGCCGAAAACTATGGTCGTCCCGGTGAAATGGGTAAACCAGTAAAAATTCCAGCGAACCATCAGGAGCTGATGAAGGAAAAGTTCAAAGAAAATCAATTCAATCTCCTCTCCAGTGACATGATCTGGGTGAATCTATCGCTCACCGATGTGCGCCATCACGACTGCAAAAAGAAACGCTACCCGGCGAAGCTGCCAACGACCTCCATTGTGATCGTGTTCCACAACGAAGCCTGGAGCACGCTGCTCCGCACGATATGGAGTGTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4089#0 CCGATTGATGTGCCGTAGCAGAATCACAAAGAAGAGATTGATGCACTCTTCTGTCACGGT 60 consensus_4089#1 --------------------------------------------------------CCGC 4 consensus_4089#2 ------------------------------------------------------------ consensus_4089#0 TTGCGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGTGT 120 consensus_4089#1 CCACGCGTCCGGTGC-CGTGGCGTTACTTGGGTTTTTTAGTTTACCAAATTGGTTCGTGT 63 consensus_4089#2 ------------------------------------------------------------ consensus_4089#0 TGCAGTGCAGTTACCAGCTGCCGATCTTTTATGTTGAAGTATATTTAGTGCTAGAATCTG 180 consensus_4089#1 CGTGTAGGTTGTGCGTGCAGTAGGTGCGCTGCCGGAAAATGCAGTAAATACCAGCAGCAA 123 consensus_4089#2 ---------------------------------------------------CCGCCCCCG 9 * * consensus_4089#0 CGTGCGGTAGATTCCGGTTCATCACTGCTCCTCCGCCCGGCTCCTGCGCTGTCGGAACAG 240 consensus_4089#1 AA----GTGTTTCCTTCCTTAGCGCAATCGAAATAGCATGTCAACATTTTAAAGATACAC 179 consensus_4089#2 AGGACGACGATCCCATCGTGGACGCGGTAGGAGATTGACACCAG-ACTCTAACAAC-TTC 67 * * * * * consensus_4089#0 TGC-ACTGAGAGTCCCGTAAATTTGAA--AGAAATGTCCGTTGTCAGCTTAAACAGAATG 297 consensus_4089#1 AACTATTCAAAAAGCATAAAATGTGAATCGCGACTGTTTTTTGTTTTCTTCAATCCAGTG 239 consensus_4089#2 TGCGACCCGGGCGGC-TACGGTGGCGGCTGCGGGGGTCG--CGATGCCGACAGTTCAATG 124 * * * * ** * * * * ** consensus_4089#0 TTCCGGGGGAAGATTCGCACCAACACCTGCCGTATCGTAGTGCTCACCTCACTCGTGTGG 357 consensus_4089#1 CAGTGTGTTT-GTTTTGTACGTAAATCGTGTGTATATTAGT-TTCGCTGTGCCTATATGA 297 consensus_4089#2 CCTCGCAC---GTATCGGCCGCA----GGATCTGAAGAAGT-GGCGGCAGGCACCAACGG 176 * * * * * * * *** * * * consensus_4089#0 CTGCTGATCGATGTGA---TACTGATAGT-GAAATA---TGCCGACTGTCCCAGT-ACCG 409 consensus_4089#1 AGTATGAAATGTGTAACTATGTTACTAGTTGAAGTG---CAATAATCGTT--AGC-AGTA 351 consensus_4089#2 TCGCCGAAAACTATGGTCGTCCCGGTGAAATGGGTAAACCAGTAAAAATTCCAGCGAACC 236 ** * * * * * * * ** * consensus_4089#0 GTGGCGGATCA-AGCTGGCTCTGCAAACGGAACGGCGACG-GCTATGATGTTGAGGTGC- 466 consensus_4089#1 TTGATGTGCCGTAGCAGAATCT-CAGAGAAGAGATTGATGCACTCTTCTGCCACGGTTTG 410 consensus_4089#2 ATCAGGAGCTGATGAAGGAAAAGTTCAAAGAAAATCAATTCAATCTCCT-CTCCAGTGA- 294 * * * * * * * * * * ** consensus_4089#0 CAAATGCAGCTCGCCAGTCGCAGCAACAACGCCGGGCGGCTGCCCCCGAGGACGACGATC 526 consensus_4089#1 CGCAGGCTGTGTGTGTGTTGCGTTTAGGTGCATGTGTGGTCACACATTGTGGCGT--GTT 468 consensus_4089#2 CATGATCTGGGTGAATCTATCGCTCACCGATGTGCGCCATCACG-ACTGCAAAAAGAAAC 353 * * * * * * * * * * consensus_4089#0 CCATCGTGGACGC-GGAGGAGATTGACACCAACTC-GAACAACTTCGGTGACCCGGGCGG 584 consensus_4089#1 GCAGTGCAGCTACCAGCTGCCGATCTTTTATGTTG-AAGTATATTTAGTGCTGCACGTGT 527 consensus_4089#2 GCTACCCGGCGA--AGCTGCCAACGACCTCCATTGTGATCGTGTTCCACAACGAAGCCTG 411 * * * * * * ** consensus_4089#0 CTACGGTGGCGGCGGCGGCGGCGGGGGTCGCGATGCCGACAGTTCAATGCCTCGCACGTA 644 consensus_4089#1 GCGCG-TAGTGA-ATCTGCG-TGAAGGTA--GATTCCGGTTCATCACTGCTCCTC-CG-- 579 consensus_4089#2 GAGCA-CGCTGCTCCGCACGATATGGAGTGTGAT-------------------------- 444 * * ** * *** consensus_4089#0 CCGGCCGCAGGAGCTGAAGAAG 666 consensus_4089#1 ---------------------- consensus_4089#2 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||