These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence [AATCGCCCGAGGTAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTTTTTTAATTGGTGTGATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATCCATCCATCACACGATTTCGATCGATCTTTGATGCAGCAGGTGCGTTCTGGTGGCTATATTCTGCTCTGGCACCAAGTCATTGTCGTTGGCAAGAAAGAAAGTCACTTGTATAAAGGANGCGGGTTCTGCTGCAAATCTAGCCAANAAAAGCNACCAAATTACCCGGTCAAGATTGGTTCACACAAATTATGGAATGGCCCTGTCGCATTAATTCGTNAAACNGTTGGGACTGAACCGAATCCCTTGGGTTCCGAACCTCCACGGCCNCGCGCGTACNGGCAAGNGAAAATCCCCCATNGTGTAANCGCCCTANGCAACAACCCGGGGCAAACTTAACCCGGGGGAAAAANACGCGTTGGCCNGTGTGTGACCAATGTCGCGCGCTTTCCGCCCATTGTTGAACATTTTTCCCCAACACGTCGT] [+] EMBL AL932410 [AATCGCCCGAGGTAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTTTTTTAATTGGTGTGATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATCCATCCATCACACGATTTCGATCGATCTTTGATGCAGCAGGTGCGTTCTGGTGGCTATATTCTGCTCTGGCACCAAGTCATTGTCGTTGGCAAGAAAGAAAGTCACTTGTATAAAGGANGCGGGTTCTGCTGCAAATCTAGCCAANAAAAGCNACCAAATTACCCGGTCAAGATTGGTTCACACAAATTATGGAATGGCCCTGTCGCATTAATTCGTNAAACNGTTGGGACTGAACCGAATCCCTTGGGTTCCGAACCTCCACGGCCNCGCGCGTACNGGCAAGNGAAAATCCCCCATNGTGTAANCGCCCTANGCAACAACCCGGGGCAAACTTAACCCGGGGGAAAAANACGCGTTGGCCNGTGTGTGACCAATGTCGCGCGCTTTCCGCCCATTGTTGAACATTTTTCCCCAACACGTCGT] consensusID : consensus_4107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CCGAAACGGGTCTTGCATGACTTGAAACAGAAGACCGTTTTAGGCAAAGGGCCGGACCGATACGAGATTGCGAAAGATGCGCGTGTGTGTGGCGTTTGCGTTAACGTCATTGACAGAACACAAAAAAACCATGTTCAACGATATGGCGAACCGTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGGTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGCTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATTCATCCATCACACGATTTCGATCGATTTGGTG] [+] EMBL BM630125 [CCGAAACGGGTCTTGCATGACTTGAAACAGAAGACCGTTTTAGGCAAAGGGCCGGACCGATACGAGATTGCGAAAGATGCGCGTGTGTGTGGCGTTTGCGTTAACGTCATTGACAGAACACAAAAAAACCATGTTCAACGATATGGCGAACCGTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGGTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGCTTCTGTAATCAGTTTATAAAATCAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCGACGATTCATCCATCACACGATTTCGATCGATTTGGTG] consensusID : consensus_4107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [ATCCCCCGAGGTTAAGATGCGCGTGTGTATGGCGTTTGCGTTACGTCATTGACAGAACACAAAAAACCATGTTCAACGATATGGCGTACCTTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTTTTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTGTCTTCTTTTTTTTAATTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATTAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAATGCAGCGCGACGATTTATCCATCACACGATTTCGATCGATTTGGTGAG] [+] EMBL AL931575 [ATCCCCCGAGGTTAAGATGCGCGTGTGTATGGCGTTTGCGTTACGTCATTGACAGAACACAAAAAACCATGTTCAACGATATGGCGTACCTTAAAATATGTAGGAATCTACAATAAAAAGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTTTTTGATCGTGCCGTTAGTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTCTGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTGTCTTCTTTTTTTTAATTGGTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGTTTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATTAGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAATGCAGCGCGACGATTTATCCATCACACGATTTCGATCGATTTGGTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4107#1 CCGAAACGGGTCTTGCATGACTTGAAACAGAAGACCGTTTTAGGCAAAGGGCCGGACCGA 60 consensus_4107#2 -------------------------------------------------------ATCCC 5 consensus_4107#0 ------------------------------------------------------------ consensus_4107#1 TACGAGATTGCGAAAGATGCGCGTGTGTGTGGCGTTTGCGTTAACGTCATTGACAGAACA 120 consensus_4107#2 C-CGAGGTT----AAGATGCGCGTGTGTATGGCGTTTGCGTTA-CGTCATTGACAGAACA 59 consensus_4107#0 ------------------------------------------------------------ consensus_4107#1 CAAAAAAACCATGTTCAACGATATGGCGAACCGTAAAATATGTAGGAATCTACAATAAAA 180 consensus_4107#2 CAAAAAA-CCATGTTCAACGATATGGCGTACCTTAAAATATGTAGGAATCTACAATAAAA 118 consensus_4107#0 ----------------------------------------------------------AA 2 ** consensus_4107#1 AGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTA 240 consensus_4107#2 AGGCCAATAAATCAGACCCGACGCGCGAAATGCAGGTTGGCGTTTTTGATCGTGCCGTTA 178 consensus_4107#0 TCGCC--CGAGGTAGACCCGACGCGCGAAATGCAGGTTGGCGTATTTGATCGTGCCGTTA 60 *** * ****************************** **************** consensus_4107#1 GTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTC 300 consensus_4107#2 GTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTC 238 consensus_4107#0 GTTCCGTAAGCTTACAGATTTTGGGGCTGTTCCGATGAGTCAACCATCACACACACACTC 120 ************************************************************ consensus_4107#1 TGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTT---------G 351 consensus_4107#2 TGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTT-GTCTTCTTTTTTTT--AATTG 295 consensus_4107#0 TGACATTGCAGTGGGTTGAATTTGTCTTACACATCTTTTGTCTTCTTTTTTTTTTAATTG 180 ************************************** *********** * consensus_4107#1 GTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGGTGT 411 consensus_4107#2 GTGTAATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGT 355 consensus_4107#0 GTGTGATTGCGCATTATTTGCTATGGTGCATTATCAAGCAAATTGTGCATTATGTGCTGT 240 **** *************************************************** *** consensus_4107#1 TTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGCTTCTGTAATCAGTTTATAAAATC 471 consensus_4107#2 TTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATT 415 consensus_4107#0 TTGCGGTAAAGGGGGAATGCACACGCTGTCACGTCGTTTCTGTAATCAGTTTATAAAATC 300 ************************************ ********************** consensus_4107#1 AGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCG 531 consensus_4107#2 AGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAATGCAGCGCG 475 consensus_4107#0 AGTATGCGATATACATCGACGAAAGCTCTTTTCTTTTGCCCAAAGCATAAGTGCAGCGCG 360 ************************************************** ********* consensus_4107#1 ACGATTCATCCATCACACGATTTCGATCGAT--TTGGTG--------------------- 568 consensus_4107#2 ACGATTTATCCATCACACGATTTCGATCGAT--TTGGTGAG------------------- 514 consensus_4107#0 ACGATCCATCCATCACACGATTTCGATCGATCTTTGATGCAGCAGGTGCGTTCTGGTGGC 420 ***** ************************ *** ** consensus_4107#1 ------------------------------------------------------------ consensus_4107#2 ------------------------------------------------------------ consensus_4107#0 TATATTCTGCTCTGGCACCAAGTCATTGTCGTTGGCAAGAAAGAAAGTCACTTGTATAAA 480 consensus_4107#1 ------------------------------------------------------------ consensus_4107#2 ------------------------------------------------------------ consensus_4107#0 GGANGCGGGTTCTGCTGCAAATCTAGCCAANAAAAGCNACCAAATTACCCGGTCAAGATT 540 consensus_4107#1 ------------------------------------------------------------ consensus_4107#2 ------------------------------------------------------------ consensus_4107#0 GGTTCACACAAATTATGGAATGGCCCTGTCGCATTAATTCGTNAAACNGTTGGGACTGAA 600 consensus_4107#1 ------------------------------------------------------------ consensus_4107#2 ------------------------------------------------------------ consensus_4107#0 CCGAATCCCTTGGGTTCCGAACCTCCACGGCCNCGCGCGTACNGGCAAGNGAAAATCCCC 660 consensus_4107#1 ------------------------------------------------------------ consensus_4107#2 ------------------------------------------------------------ consensus_4107#0 CATNGTGTAANCGCCCTANGCAACAACCCGGGGCAAACTTAACCCGGGGGAAAAANACGC 720 consensus_4107#1 ------------------------------------------------------------ consensus_4107#2 ------------------------------------------------------------ consensus_4107#0 GTTGGCCNGTGTGTGACCAATGTCGCGCGCTTTCCGCCCATTGTTGAACATTTTTCCCCA 780 consensus_4107#1 --------- consensus_4107#2 --------- consensus_4107#0 ACACGTCGT 789 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||