cluster # 4108

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Anopheles gambiae
cluster # 4108 cluster # 4108 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4108#0 length = 765 sequences # 2

consensus_4108#1 length = 460 sequences # 1

consensusID : consensus_4108#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 765
fasta sequence

                              [GGCAAGAATNCCGGCACGTGGAGCAGCTTGGTTCGCTTTACCCTGTTCGGAAAATCTTCCAATAGTCGAGGAAACACGGGAAACCACACGCATTGTTGGAAAAGTGCACGGAATTGTGTGTGTGTAGAGTGTGTATTTGTGTGTAGTTAGTGCTTTATAGCGAAAGAGAGCGTAACTCAAGTGTTGCAAGTGCCAAGTGTGACGATCACCAAGCAAGAAGTGTGCTCCT-TCCCCCGCGTCTTTCACGAACTCTTCCGGTAGCATCCAGAGCGTTAGTTGAAGCGCCTAAACCCAGCAAGCACAAACCTCTCAAGCGCCTCAAAGCGAAGATGGCCACCGAAACCGAGAACAAGCCCGTCGTTGCCGGCGAGGAGGAGAAGAAGGTAGAGGCCCCAGACTGTGGAGGCGGCGGCAGCAGCAGCACCGGGCACAGCAGGATAAGCCAGCGGAGGCTAGCG--GGCGGCCGGCAGCGGGCGGCGGTGACACGAGCACCGATAAGAAGCCGGAGGAGAAGGCCGATGTTGCGCCGGGCGACGGCGGCGAGGGTGGCGATGGAGCGACCAGCGTCCAGATGCGGAGGCNCGGCCCGGACACAGAAGGAGAAGGACGATGAAAGCCGACCGGCCACAAGGCGAACTTCGCAGANAGGACGTGGATGTACCCTGGTANCCAAGGTTCACCCGCACACCAGATTGACCTTGNCAGATCGATATTTCGGACCATTACTGGCTTGAAGGGTGGAAAACCTTGGATGGANCATTACGA]

[+] EMBL BX467196             [GGCAAGAATNCCGGCACGTGGAGCAGCTTGGTTCGCTTTACCCTGTTCGGAAAATCTTCCAATAGTCGAGGAAACACGGGAAACCACACGCATTGTTGGAAAAGTGCACGGAATTGTGTGTGTGTAGAGTGTGTATTTGTGTGTAGTTAGTGCTTTATAGCGAAAGAGAGCGTAACTCAAGTGTTGCAAGTGCCAAGTGTGACGATCACCAAGCAAGAAGTGTGCTCCT TCCCCCGCGTCTTTCACGAACTCTTCCGGTAGCATCCAGAGCGTTAGTTGAAGCGCCTAAACCCAGCAAGCACAAACCTCTCAAGCGCCTCAAAGCGAAGATGGCCACCGAAACCGAGAACAAGCCCGTCGTTGCCGGCGAGGAGGAGAAGAAGGTAGAGGCCCCAGACTGTGGAGGCGGCGGCAGCAGCAGCACCGGGCACAGCAGGATAAGCCAGCGGAGGCTAGCG  GGCGGCCGGCAGCGGGCGGCGGTGACACGAGCACCGATAAGAAGCCGGAGGAGAAGGCCGATGTTGCGCCGGGCGACGGCGGCGAGGGTGGCGATGGAGCGACCAGCGTCCAGATGCGGAGGCNCGGCCCGGACACAGAAGGAGAAGGACGATGAAAGCCGACCGGCCACAAGGCGAACTTCGCAGANAGGACGTGGATGTACCCTGGTANCCAAGGTTCACCCGCACACCAGATTGACCTTGNCAGATCGATATTTCGGACCATTACTGGCTTGAAGGGTGGAAAACCTTGGATGGANCATTACGA]
[+] EMBL BX602574             [                                                                                                                            TAGAGTGTGTGTTTGTGTGTAGTTAGTGCTTTATAGCGAAAGAGAGCGTATCCCAAGTGTTGCAAGTGCCAAGTGTGACGATCACCAAGCAAGAAGTGTGCTCCTCCCCCCCGCGTCTTTCACGAACTCTTCCGGTAGCATCCAGAGCGTTAGTTGAAGCGCCTAAACCCAGCAAGCACAAACCTCT AAGCGACTCAAAGCGAAGATGGCCACCGAAACCGAGAACAAGCCCGTCGTTGCCGGCGAGGAGGAGAAGAAGGTAGAGGCCCCAG CTGTGGAGGCGGCGGCAGCAGCAGCACCGGCCGCAGCA GATAAGCCAGCGGAAGCT GCGGCGGCGG CGGCAGCGGGCGGCGGTGACACGGCCGCCGATAAGAAGCCTGAGGAGAAGGCCGATGc                                                                                                                                                                                                                                                   ]




>consensus_4108#0
GGCAAGAATNCCGGCACGTGGAGCAGCTTGGTTCGCTTTACCCTGTTCGGAAAATCTTCC
AATAGTCGAGGAAACACGGGAAACCACACGCATTGTTGGAAAAGTGCACGGAATTGTGTG
TGTGTAGAGTGTGTATTTGTGTGTAGTTAGTGCTTTATAGCGAAAGAGAGCGTAACTCAA
GTGTTGCAAGTGCCAAGTGTGACGATCACCAAGCAAGAAGTGTGCTCCTTCCCCCGCGTC
TTTCACGAACTCTTCCGGTAGCATCCAGAGCGTTAGTTGAAGCGCCTAAACCCAGCAAGC
ACAAACCTCTCAAGCGCCTCAAAGCGAAGATGGCCACCGAAACCGAGAACAAGCCCGTCG
TTGCCGGCGAGGAGGAGAAGAAGGTAGAGGCCCCAGACTGTGGAGGCGGCGGCAGCAGCA
GCACCGGGCACAGCAGGATAAGCCAGCGGAGGCTAGCGGGCGGCCGGCAGCGGGCGGCGG
TGACACGAGCACCGATAAGAAGCCGGAGGAGAAGGCCGATGTTGCGCCGGGCGACGGCGG
CGAGGGTGGCGATGGAGCGACCAGCGTCCAGATGCGGAGGCNCGGCCCGGACACAGAAGG
AGAAGGACGATGAAAGCCGACCGGCCACAAGGCGAACTTCGCAGANAGGACGTGGATGTA
CCCTGGTANCCAAGGTTCACCCGCACACCAGATTGACCTTGNCAGATCGATATTTCGGAC
CATTACTGGCTTGAAGGGTGGAAAACCTTGGATGGANCATTACGA

consensusID : consensus_4108#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [AGAATCGCCCGAGTTACACAGCCAGCAGCAGCAGCAGCGAGCAGCGAGCGCGTCTTTGGTCCGCACAAGAAGGCTTGTAGCAAACTCCCACATTTGCAGAGCAGCAGCAGCATCAGAAGCAGCTTGGTTCGCTTTACCTGTTCGGAAAATCTTCCAATAGTCGAGGAAACACGGGAAACCACACGCATTGTTGGAAAAGTGCACGGAATTGTGTGTGTGTAGAGTGTGTGTTTGTGTGTAGTTAGTGCTTTATAGCGAACGAGAGCGTACCCCAAGTGTTGCAAGTGCCAAGTGTGACGATCACCAAGCAAGAAGTGTGCTCCTTCCCCCGCGTCTTTCACGAACTCTTCCGGTAGCATCCAGAGCGTTAGTTGAAGCGCCTAAATACCAGCAAGCACAAACCTCTAAGCGACTCAAAGCGAAGATGGCCACCGAAACCGAGAACAAGCCCGTCGTTGCC]

[+] EMBL AL930799             [AGAATCGCCCGAGTTACACAGCCAGCAGCAGCAGCAGCGAGCAGCGAGCGCGTCTTTGGTCCGCACAAGAAGGCTTGTAGCAAACTCCCACATTTGCAGAGCAGCAGCAGCATCAGAAGCAGCTTGGTTCGCTTTACCTGTTCGGAAAATCTTCCAATAGTCGAGGAAACACGGGAAACCACACGCATTGTTGGAAAAGTGCACGGAATTGTGTGTGTGTAGAGTGTGTGTTTGTGTGTAGTTAGTGCTTTATAGCGAACGAGAGCGTACCCCAAGTGTTGCAAGTGCCAAGTGTGACGATCACCAAGCAAGAAGTGTGCTCCTTCCCCCGCGTCTTTCACGAACTCTTCCGGTAGCATCCAGAGCGTTAGTTGAAGCGCCTAAATACCAGCAAGCACAAACCTCTAAGCGACTCAAAGCGAAGATGGCCACCGAAACCGAGAACAAGCCCGTCGTTGCC]




>consensus_4108#1
AGAATCGCCCGAGTTACACAGCCAGCAGCAGCAGCAGCGAGCAGCGAGCGCGTCTTTGGT
CCGCACAAGAAGGCTTGTAGCAAACTCCCACATTTGCAGAGCAGCAGCAGCATCAGAAGC
AGCTTGGTTCGCTTTACCTGTTCGGAAAATCTTCCAATAGTCGAGGAAACACGGGAAACC
ACACGCATTGTTGGAAAAGTGCACGGAATTGTGTGTGTGTAGAGTGTGTGTTTGTGTGTA
GTTAGTGCTTTATAGCGAACGAGAGCGTACCCCAAGTGTTGCAAGTGCCAAGTGTGACGA
TCACCAAGCAAGAAGTGTGCTCCTTCCCCCGCGTCTTTCACGAACTCTTCCGGTAGCATC
CAGAGCGTTAGTTGAAGCGCCTAAATACCAGCAAGCACAAACCTCTAAGCGACTCAAAGC
GAAGATGGCCACCGAAACCGAGAACAAGCCCGTCGTTGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4108#0      ------------------------------------------------------------
consensus_4108#1      AGAATCGCCCGAGTTACACAGCCAGCAGCAGCAGCAGCGAGCAGCGAGCGCGTCTTTGGT 60
                                                                                  

consensus_4108#0      ------------------------------------GGCAAGAATNCCGGCACGTGGAGC 24
consensus_4108#1      CCGCACAAGAAGGCTTGTAGCAAACTCCCACATTTGCAGAGCAGCAGCAGCATCAGAAGC 120
                                                             *  *    * ***   * ***

consensus_4108#0      AGCTTGGTTCGCTTTACCCTGTTCGGAAAATCTTCCAATAGTCGAGGAAACACGGGAAAC 84
consensus_4108#1      AGCTTGGTTCGCTTTACC-TGTTCGGAAAATCTTCCAATAGTCGAGGAAACACGGGAAAC 179
                      ****************** *****************************************

consensus_4108#0      CACACGCATTGTTGGAAAAGTGCACGGAATTGTGTGTGTGTAGAGTGTGTATTTGTGTGT 144
consensus_4108#1      CACACGCATTGTTGGAAAAGTGCACGGAATTGTGTGTGTGTAGAGTGTGTGTTTGTGTGT 239
                      ************************************************** *********

consensus_4108#0      AGTTAGTGCTTTATAGCGAAAGAGAGCGTAACTCAAGTGTTGCAAGTGCCAAGTGTGACG 204
consensus_4108#1      AGTTAGTGCTTTATAGCGAACGAGAGCGTACCCCAAGTGTTGCAAGTGCCAAGTGTGACG 299
                      ******************** ********* * ***************************

consensus_4108#0      ATCACCAAGCAAGAAGTGTGCTCCTTCCCCCGCGTCTTTCACGAACTCTTCCGGTAGCAT 264
consensus_4108#1      ATCACCAAGCAAGAAGTGTGCTCCTTCCCCCGCGTCTTTCACGAACTCTTCCGGTAGCAT 359
                      ************************************************************

consensus_4108#0      CCAGAGCGTTAGTTGAAGCGCCTAAAC-CCAGCAAGCACAAACCTCTCAAGCGCCTCAAA 323
consensus_4108#1      CCAGAGCGTTAGTTGAAGCGCCTAAATACCAGCAAGCACAAACCTCT-AAGCGACTCAAA 418
                      **************************  ******************* ***** ******

consensus_4108#0      GCGAAGATGGCCACCGAAACCGAGAACAAGCCCGTCGTTGCCGGCGAGGAGGAGAAGAAG 383
consensus_4108#1      GCGAAGATGGCCACCGAAACCGAGAACAAGCCCGTCGTTGCC------------------ 460
                      ******************************************                  

consensus_4108#0      GTAGAGGCCCCAGACTGTGGAGGCGGCGGCAGCAGCAGCACCGGGCACAGCAGGATAAGC 443
consensus_4108#1      ------------------------------------------------------------
                                                                                  

consensus_4108#0      CAGCGGAGGCTAGCGGGCGGCCGGCAGCGGGCGGCGGTGACACGAGCACCGATAAGAAGC 503
consensus_4108#1      ------------------------------------------------------------
                                                                                  

consensus_4108#0      CGGAGGAGAAGGCCGATGTTGCGCCGGGCGACGGCGGCGAGGGTGGCGATGGAGCGACCA 563
consensus_4108#1      ------------------------------------------------------------
                                                                                  

consensus_4108#0      GCGTCCAGATGCGGAGGCNCGGCCCGGACACAGAAGGAGAAGGACGATGAAAGCCGACCG 623
consensus_4108#1      ------------------------------------------------------------
                                                                                  

consensus_4108#0      GCCACAAGGCGAACTTCGCAGANAGGACGTGGATGTACCCTGGTANCCAAGGTTCACCCG 683
consensus_4108#1      ------------------------------------------------------------
                                                                                  

consensus_4108#0      CACACCAGATTGACCTTGNCAGATCGATATTTCGGACCATTACTGGCTTGAAGGGTGGAA 743
consensus_4108#1      ------------------------------------------------------------
                                                                                  

consensus_4108#0      AACCTTGGATGGANCATTACGA 765
consensus_4108#1      ----------------------