These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1050 fasta sequence [AGATCGCCCGAGGGGACAACGCACGGTAAATCGTAACAACAACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGATCGCAAAACTTTAAACTAGTCGCGTAAATATTTAAATTTAAATGTCAATTATCGTTAAGCAAACCATGCAAACCTGTGTCCTGTAAACATCACTCTATGCAACGATTTGCACGCGTGAGGAGTAATTTAACAATAAATAAAAAAAAACAACATACACTTATCCAAATGACCACAGCGTACGGGAAAGGGCAAAACAGATCTAGTGGATGCACTTTTAATACCTTGACATGCACAGTTAAATTTGAAATTTTAGCCTCCAGCTATAATGCNCGGTTAAAATGCAGCACCAGAGCAAACCAAAGCGGTATAAATAAAACATAAGTTGATCTTGCTTAACACAGCAAACCGG-CCACAAGGCAAAGCTAAGATAGCGAACCACCACGATAAACTAGAACAACTCTTCATATGTATG-TTGTGTATGTGTACGTGTACGTGTAAGTGTACTACATGTAAGCATTAATAAACAAAGCAACATCCATTGCGACAAAGCAGGTCTGGGTGCTGCGTAAAACGGTAACGAGAAAGGGGCATAAAACAAAAGCTCCAGAACACTTCATTAAAATTTCCTATTTGGTGCAACAATGAGAACACAGTTTTGCTAAACGGTTTGAGATGATGATGATTAAAGAAACAATACACACAGCCAAAACCCGGTTACAAATGGGACCGCACACGATGTTCCACGATGCTTCCCCACAGGTCTTCTCCATCGGATACGAAATGTCGATACAAATTTTGGAGCGTTTTATAGCGGGGAATGAGCGTGAATGGTAGAATTTCGTGTGTGGAAAGCATTCGAACAGCGTGAGAAAACTCAACGGTGAATCCAGTTTTAATTTAGTTTTAAAAGAATCACACAATTACACCGCTGAGTTTCGAAATCGAATAAAAGAAAGTCACGTATTCCCATCCCAAACTGCTTGTGATGGAGAAGCGGAACAGTTGAAACCGTGCATCGGTACAT] [+] EMBL AL930816 [AGATCGCCCGAGGGGACAACGCACGGTAAATCGTAACAACAACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGATCGCAAAACTTTAAACTAGTCGCGTAAATATTTAAATTTAAATGTCAATTATCGTTAAGCAAACCATGCAAACCTGTGTCCTGTAAACATCACTCTATGCAACGATTTGCACGCGTGAGGAGTAATTTAACAATAAATAAAAAAAAACAACATACACTTATCCAAATGACCACAGCGTACGGGAAAGGGCAAAACAGATCTAGTGGATGCACTTTTAATACCTTGACATGCACAGTTAAATTTGAAATTTTAGCCTCCAGCTATAATGCNCGGTTAAAATGCAGCACCAGAGCAAACCAAAGCGGTATAAATAAAACATAAGTTGATCTTGCTTAACACAGCAAACCGG CCACAAGGCAAAGCTAAGATAGCGAACCACCACGATAAACTAGAACAACTCTTCATATGTATG TTGTGTATGTGTACGTGTAC ] [+] EMBL BX609348 [ AGCTATAATGC AGGTTAAAATGCAGCACCAGAGCAAACAAAAGCGGTATAAATAAAACATAAGTTGATCTTGCTTAACACAGCAAACCGGCCCACAAGGCAAAGCTAAGATAGCGAACCA CACGATAAACTAGAACAACTCTTCATATGTATGTTTGTGTATGTGTACGTGTACGTGTAAGTGTACTACATGTAAGCATTAATAAACAAAGCAACATCCATTGCGACAAAGCAGGTCTGGGTGCTGCGTAAAACGGTAACGAGAAAGGGGCATAAAACAAAAGCTCCAGAACACTTCATTAAAATTTCCTATTTGGTGCAACAATGAGAACACAGTTTTGCTAAACGGTTTGAGATGATGATGATTAAAGAAACAATACACACAGCCAAAACCCGGTTACAAATGGGACCGCACACGATGTTCCACGATGCTTCCCCACAGGTCTTCTCCATCGGATACGAAATGTCGATACAAATTTTGGAGCGTTTTATAGCGGGGAATGAGCGTGAATGGTAGAATTTCGTGTGTGGAAAGCATTCGAACAGCGTGAGAAAACTCAACGGTGAATCCAGTTTTAATTTAGTTTTAAAAGAATCACACAATTACACCGCTGAGTTTCGAAATCGAATAAAAGAAAGTCACGTATTCCCATCCCAAACTGCTTGTGATGGAGAAGCGGAACAGTTGAAACCGTGCATCGGTACAT] consensusID : consensus_4115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence [AGCGTAACATAAGGCAATACTTAAATGGAAAGGCCCAAAAACCAGGACAAACGCACCGGTAAATCGTAACAACCAACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGATCGCAAACTTTAAACTA] [+] EMBL BX604574 [AGCGTAACATAAGGCAATACTTAAATGGAAAGGCCCAAAAACCAGGACAAACGCACCGGTAAATCGTAACAACCAACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGATCGCAAACTTTAAACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4115#0 ---------------------------AGATCGCCCGAGG----GGACAA-CGCAC-GGT 27 consensus_4115#1 AGCGTAACATAAGGCAATACTTAAATGGAAAGGCCCAAAAACCAGGACAAACGCACCGGT 60 * **** * ****** ***** *** consensus_4115#0 AAATCGTAACAAC-AACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGA 86 consensus_4115#1 AAATCGTAACAACCAACACTAAACGATGCATCTAAATGCTAAATAACTCAACATTTCCGA 120 ************* ********************************************** consensus_4115#0 TCGCAAAACTTTAAACTAGTCGCGTAAATATTTAAATTTAAATGTCAATTATCGTTAAGC 146 consensus_4115#1 TCGCAAA-CTTTAAACTA------------------------------------------ 137 ******* ********** consensus_4115#0 AAACCATGCAAACCTGTGTCCTGTAAACATCACTCTATGCAACGATTTGCACGCGTGAGG 206 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 AGTAATTTAACAATAAATAAAAAAAAACAACATACACTTATCCAAATGACCACAGCGTAC 266 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 GGGAAAGGGCAAAACAGATCTAGTGGATGCACTTTTAATACCTTGACATGCACAGTTAAA 326 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 TTTGAAATTTTAGCCTCCAGCTATAATGCNCGGTTAAAATGCAGCACCAGAGCAAACCAA 386 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 AGCGGTATAAATAAAACATAAGTTGATCTTGCTTAACACAGCAAACCGGCCACAAGGCAA 446 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 AGCTAAGATAGCGAACCACCACGATAAACTAGAACAACTCTTCATATGTATGTTGTGTAT 506 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 GTGTACGTGTACGTGTAAGTGTACTACATGTAAGCATTAATAAACAAAGCAACATCCATT 566 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 GCGACAAAGCAGGTCTGGGTGCTGCGTAAAACGGTAACGAGAAAGGGGCATAAAACAAAA 626 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 GCTCCAGAACACTTCATTAAAATTTCCTATTTGGTGCAACAATGAGAACACAGTTTTGCT 686 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 AAACGGTTTGAGATGATGATGATTAAAGAAACAATACACACAGCCAAAACCCGGTTACAA 746 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 ATGGGACCGCACACGATGTTCCACGATGCTTCCCCACAGGTCTTCTCCATCGGATACGAA 806 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 ATGTCGATACAAATTTTGGAGCGTTTTATAGCGGGGAATGAGCGTGAATGGTAGAATTTC 866 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 GTGTGTGGAAAGCATTCGAACAGCGTGAGAAAACTCAACGGTGAATCCAGTTTTAATTTA 926 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 GTTTTAAAAGAATCACACAATTACACCGCTGAGTTTCGAAATCGAATAAAAGAAAGTCAC 986 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 GTATTCCCATCCCAAACTGCTTGTGATGGAGAAGCGGAACAGTTGAAACCGTGCATCGGT 1046 consensus_4115#1 ------------------------------------------------------------ consensus_4115#0 ACAT 1050 consensus_4115#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||