These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 748 fasta sequence [CCGCCGCGAAGCGTTCGGGATCGGACCCTGTGTCCAAACCGGCAAGTCAGGGCGCAGGCGAGACGGGTAAGACTGGTGCGAGCTGTGATAGGAACCAGCGCGGGAACGATCAAGAGCTGTCGGAGCTGCAGCGCAACATTCGAGGGCTGGAGCAGTACTACTATCCCTCGCCGTTGGCGTCTCCGGCCGTTCCAGTGCAGCTGAGTGTGATGCGCGCCTCCGTCATACAGCAGCAACCTTTACATTCGTCGGCGGGCATTGGGCCCGAGGGAGAACCACGCCCGGAAAGTGGCTGTGAAGTGCAAGATCAGCAACAGTCGCAGGAGCAGCAGGAACAGCAGCAACTGTCCGTAATCATGGAGGGCAACGATGGTCAAATTCCGCGGCCCATCTGGCCCCTGGACACGGACGACTCGCTGATGGACATTAATCTGGAGTCGTTTCGCATGGCGAACCACAGCAGTCAGAACTTGATCGGTTTCGAGAGGTCCGTCGCTGTCCTCGATCTCCGAGAGTGAAATGTACGCGATCCGCGATCAAGCGATGGAAGGGGCCGGCGATGGAGGCACGCAAAGTCGCAAGAAGTCACAGTACGAGGAGTATCTCGAGTTTCACAACACGCGCAACATACTGGAGCAGATACGGGGTAAGCTGAACACGCTGCTGGAACAGCGCACCGAGCAGCAGCAGCAGCAGCAGAAGCAGCAGGAAGATCATCCAGCTCAGCGGGATACCGAAGACGGGCAAC] [+] EMBL BM605032 [CCGCCGCGAAGCGTTCGGGATCGGACCCTGTGTCCAAACCGGCAAGTCAGGGCGCAGGCGAGACGGGTAAGACTGGTGCGAGCTGTGATAGGAACCAGCGCGGGAACGATCAAGAGCTGTCGGAGCTGCAGCGCAACATTCGAGGGCTGGAGCAGTACTACTATCCCTCGCCGTTGGCGTCTCCGGCCGTTCCAGTGCAGCTGAGTGTGATGCGCGCCTCCGTCATACAGCAGCAACCTTTACATTCGTCGGCGGGCATTGGGCCCGAGGGAGAACCACGCCCGGAAAGTGGCTGTGAAGTGCAAGATCAGCAACAGTCGCAGGAGCAGCAGGAACAGCAGCAACTGTCCGTAATCATGGAGGGCAACGATGGTCAAATTCCGCGGCCCATCTGGCCCCTGGACACGGACGACTCGCTGATGGACATTAATCTGGAGTCGTTTCGCATGGCGAACCACAGCAGTCAGAACTTGA ] [+] EMBL BM589650 [ ccgCGTTGGCGTCTCCGGCCGTTCCAGTGCAGCTGAGTGTGATGCGCGCCTCCGTCATACAGCAGCAACCTTTACATTCGTCGGCGGGCATTGGG CCGAGGGAGAACCACGCCCGGAAAGTGGCTGTGAAGTGCAAGATCAGCAACAGTCGCAGGAGCAGCAGGAACAGCAGCAACTGTCCGTAATCATGGAGGGCAACGATGGTCAAATTCCGCGGCCCATCTGGCCCCTGGACACGGACGACTCGCTGATGGACATTAATCTGGAGTCGTTTCGCATGGCGAACCACAGCAGTCAGAACTTGATCGGTTTCGAGAGGTCCGTCGCTGTCCTCGATCTCCGAGAGTGAAATGTACGCGATCCGCGATCAAGCGATGGAAGGGGCCGGCGATGGAGGCACGCAAAGTCGCAAGAAGTCACAGTACGAGGAGTATCTCGAGTTTCACAACACGCGCAACATACTGGAGCAGATACGGGGTAAGCTGAACACGCTGCTGGAACAGCGCACCGAGCAGCAGCAGCAGCAGCAGAAGCAGCAGGAAGATCATCCAGCTCAGCGGGATACCGAAGACGGGCAAC] consensusID : consensus_4117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [CCGCCCACGCGTCCGCGCAAAGCCGCAAGAAGTCACAGTACGAGGAGTATCTCGAGTTTCACATCACGCGCAACATACTGGAGCAGATACGGGGTAAGCTGAACACGCTGCTGGAACAGCGCACTGAACAGCAGCAGCAGCAGCAGAAACATCAGGAAGATCATCCAGCTCAGCGGTTACCGAAGACGGGCAATCCGTTCATGAAGGATGCGGGACCGATCGAGACGGAGCTGGAGAATAATATTGCCATTCTGAAGGCGGATCTGGACGGGTATCTACGCACGATGAACCACAAGAATGAGAACTAGATCCGGGGCTTCTGCAAGGGAATGAGCCGGGAGCCCAAAGTGGTGGCCGTACAGAATGCGGTTGAGCAACGAAACCGATCACTATCTGGATCCATATTGAGTCTCGAGCATGATTA] [+] EMBL BM577331 [CCGCCCACGCGTCCGCGCAAAGCCGCAAGAAGTCACAGTACGAGGAGTATCTCGAGTTTCACATCACGCGCAACATACTGGAGCAGATACGGGGTAAGCTGAACACGCTGCTGGAACAGCGCACTGAACAGCAGCAGCAGCAGCAGAAACATCAGGAAGATCATCCAGCTCAGCGGTTACCGAAGACGGGCAATCCGTTCATGAAGGATGCGGGACCGATCGAGACGGAGCTGGAGAATAATATTGCCATTCTGAAGGCGGATCTGGACGGGTATCTACGCACGATGAACCACAAGAATGAGAACTAGATCCGGGGCTTCTGCAAGGGAATGAGCCGGGAGCCCAAAGTGGTGGCCGTACAGAATGCGGTTGAGCAACGAAACCGATCACTATCTGGATCCATATTGAGTCTCGAGCATGATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4117#0 CCGCCGCGAAGCGTTCGGGATCGGACCCTGTGTCCAAACCGGCAAGTCAGGGCGCAGGCG 60 consensus_4117#1 ------------------------------------------------------------ consensus_4117#0 AGACGGGTAAGACTGGTGCGAGCTGTGATAGGAACCAGCGCGGGAACGATCAAGAGCTGT 120 consensus_4117#1 ------------------------------------------------------------ consensus_4117#0 CGGAGCTGCAGCGCAACATTCGAGGGCTGGAGCAGTACTACTATCCCTCGCCGTTGGCGT 180 consensus_4117#1 --------------------------------------------------CCGCCCACGC 10 *** ** consensus_4117#0 CTCCGGCC---GTTCCAGTGCAGCTGAGTGTGATGCGCGCCTCCGTCATACAGCAGCAAC 237 consensus_4117#1 GTCCGCGCAAAGCCGCAAGAAGTCACAGTACGAGGAGTATCTCGA--GTTTCACATCACG 68 **** * * ** * *** ** * * *** * ** ** consensus_4117#0 CTTTACATTCGTCGGCGGGCATTGGGCCCGAGGGAGAACCACGCCCGGAAAGTGGCTGTG 297 consensus_4117#1 CGCAACATACTGGAGCAGATACGGGG--TAAGCTGAACACGCTGCTGGAA-----CAGCG 121 * **** * ** * * *** ** * * * * **** * * * consensus_4117#0 AAGTGCAAGATCAGCAACAGTCGCAGGAGCAGCAGGAACAGCAGCAA--CTGTCCGTAAT 355 consensus_4117#1 CACTG-AACAGCAGCAGCAGCAGCAGAAACATCAGGAAGATCATCCAGCTCAGCGGTTAC 180 * ** ** * ***** *** **** * ** ****** * ** * * * ** * consensus_4117#0 CATGGA-GGGCAA--CGATGGTCAAAT-TCCGCGGCCCATCTGGCCC---CTGGACACGG 408 consensus_4117#1 CGAAGACGGGCAATCCGTTCATGAAGGATGCGGGACCGATCGAGACGGAGCTGGAGAATA 240 * ** ****** ** * * ** * ** * ** *** * * ***** * consensus_4117#0 ACGACTCGCTGATGGACATTAATCTGGA---GTCGTTTCGCATGGCGAACCACAGCAGTC 465 consensus_4117#1 ATATTGCCATTCTGAAGGCGGATCTGGACGGGTATCTACGCACGATGAACCACAAGAATG 300 * * * ** * ******* ** * **** * ******** * * consensus_4117#0 AGAACTTGATC---GGTTTCGAGAGGTCCGTCGCTGTCCTCGATCTCCGAGAGTGAAATG 522 consensus_4117#1 AGAACTAGATCCGGGGCTTCTGCAAG---GGAATGAGCCGGGAGCCCAAAGTGGTGGCCG 357 ****** **** ** *** * * * ** ** * * ** * * consensus_4117#0 TACGCGATCCGCGATCAAGCGATGGAAGGGGCCGGCGA-TGGAGGCACGCAAAGTCGCAA 581 consensus_4117#1 TACAGAAT--GCGGTTGAGCAACGAAACCGATCACTATCTGGATCCATATTGAGTCTCGA 415 *** ** *** * *** * * ** * * **** ** **** * * consensus_4117#0 GAAGTCACAGTACGAGGAGTATCTCGAGTTTCACAACACGCGCAACATACTGGAGCAGAT 641 consensus_4117#1 GCATGATTA--------------------------------------------------- 424 * * * consensus_4117#0 ACGGGGTAAGCTGAACACGCTGCTGGAACAGCGCACCGAGCAGCAGCAGCAGCAGCAGAA 701 consensus_4117#1 ------------------------------------------------------------ consensus_4117#0 GCAGCAGGAAGATCATCCAGCTCAGCGGGATACCGAAGACGGGCAAC 748 consensus_4117#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||