These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1020 fasta sequence [CCGTAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGAGAAAAAAACATAACACAAAAACAATAAACACACACTCTAGTGTAGAGTTAAACTGTATTTAAAGCAAAAGAGAAAAACAAAACAGCATGCAAACCTGATAGGAAAACGTCTTACCAAAGCAAGCTGGACAGGCAAGACCGGAACAACACAATAATACACGGAACAATATCTGGCGGACGGTTTGTTTTGTTTTCCCCAGTGCATGAAAACAATCATCAACACGGATTGAAAACGGGTCGATGAATGCATTACGGACGAGGGTCGAGAGGAAGGACAAAAACCATTTCAACTCTAACTAGCGACTACAAATATACAGTATACACTATTACGCTCTTACAAAGCAGAAACCCCACCGTGTGGTTTTGTTGACAGTTTGACAGTTGCCTATACGCTGATACTAACCCCTATAGTACGAACTGAAGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCTCTCTCGCGTGTCCTTTTACCTTCCCTCTCCCCCCAACCACTTAGCCAGGTTTCTCTGAGCTGAACTCAGAACTTTCCACTCTACTAGTGGTTGCTTCGTTTTCATCCCCCCCACCAGTTAGATTAGTTAGCTGAGCGAAGTAGCGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCCCTGACCCTTTCCATCAGGTGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAACAAAACGAGACGAAGCAAAAACTGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAGAGGGTGTTTACACCCGGTTAAAGCGAGACGTGTTAAAAGTGTGTACGAAAGGAGCAAGAGCCGCTACCGAATCAACCAAGACAAGACAGCAAAACTAGCGCGAGTCAGAAAGACAGAGCAG] [+] EMBL BM639483 [CCGTAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGAGAAAAAAACATAACACAAAAACAATAAACACACACTCTAGTGTAGAGTTAAACTGTATTTAAAGCAAAAGAGAAAAACAAAACAGCATGCAAACCTGATAGGAAAACGTCTTACCAAAGCAAGCTGGACAGGCAAGACCGGAACAACACAATAATACACGGAACAATATCTGGCGGACGGTTTGTTTTGTTTTCCCCAGTGCATGAAAACAATCATCAACACGGATTGAAAACGGGTCGATGAATGCATTACGGACGAGGGTCGAGAGGAAGGACAAAAACCATTTCAACTCTAACTAGCGACTACAAATATACAGTATACACTATTACGCTCTTACAAAGCAGAAACCCCACCGTGTGGTTTTGTTGACAGTTTGACAGTTGCCTATACGCTGATACTAACCCCTATAGTACGAACTGAAGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCTCTCTCGCGTGTCCTTTTACCTTCCCTCTCCCCCCAACCACTTAGCCAGGTTTCTCTGAGCTGAACTCAGAACTTTCCACTCTACTAGTGGTTGCTTCGTTTTCATCCCCCCC ] [+] EMBL BM592844 [ ccGAAGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCTCTCACGCGTGTCCTTTTACTTCCCCTCTCTCCCCAACCTCTTAGCCAGGTTTCTCTGAGCTGAACTCAGAATTTTCCACTCCACTAACGTTTGCTTCGTTTTCATCCCCCCCACCAGTTAGATTAGTTAGCTGAGCGAAGTAGCGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCCCTGACCCTTTCCATCAGGTGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAACAAAACGAGACGAAGCAAAAACTGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAGAGGGTGTTTACACCCGGTTAAAGCGAGACGTGTTAAAAGTGTGTACGAAAGGAGCAAGAGCCGCTACCGAATCAACCAAGACAAGACAGCAAAACTAGCGCGAGTCAGAAAGACAGAGCAG] consensusID : consensus_4118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCTTATACAGCTTGATGTAGCACTCTATATTAGCTTCAAAATCGAATCACAACAATGAGAAGTGTTTTGAATTGTATGGAAACAGAAACACTGAAAGGTTCGTAATAATATGCGTTTCGCCTCTGACTGTGTATCTGTGTGTGTGTGTTTAAGTGTTTGTGTGTACTATTTGTTAAACCCCTCCTGCACTCACTCTTCCACACACACACCGGTTCGCTTCCACAACCTTATCGCTGCCCCAAGTGTTCCTTCTCTTGCCTTCTGTCCAACCTCTTCTCAAAAGCTAACGTGCGTCGTACGTTCGTCGCTTGCGAGAAGAGGTTGGACAGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCTCTGACCCTTTCCATCAGGAGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAAAAAGAGATGAAGCGAAAAATGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAAAGGGTGTTTACACCCGGTTAAAGCGTGACGTGTTAAAAGTGTGTCAGAAAGTAG] [-] EMBL BX617311 [CCTTATACAGCTTGATGTAGCACTCTATATTAGCTTCAAAATCGAATCACAACAATGAGAAGTGTTTTGAATTGTATGGAAACAGAAACACTGAAAGGTTCGTAATAATATGCGTTTCGCCTCTGACTGTGTATCTGTGTGTGTGTGTTTAAGTGTTTGTGTGTACTATTTGTTAAACCCCTCCTGCACTCACTCTTCCACACACACACCGGTTCGCTTCCACAACCTTATCGCTGCCCCAAGTGTTCCTTCTCTTGCCTTCTGTCCAACCTCTTCTCAAAAGCTAACGTGCGTCGTACGTTCGTCGCTTGCGAGAAGAGGTTGGACAGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCTCTGACCCTTTCCATCAGGAGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAAAAAGAGATGAAGCGAAAAATGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAAAGGGTGTTTACACCCGGTTAAAGCGTGACGTGTTAAAAGTGTGTCAGAAAGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4118#0 CCGTAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGA 60 consensus_4118#1 ------------------------------------------------------------ consensus_4118#0 GAAAAAAACATAACACAAAAACAATAAACACACACTCTAGTGTAGAGTTAAACTGTATTT 120 consensus_4118#1 ------------------------------------------------------------ consensus_4118#0 AAAGCAAAAGAGAAAAACAAAACAGCATGCAAACCTGATAGGAAAACGTCTTACCAAAGC 180 consensus_4118#1 ------------------------------------------------------------ consensus_4118#0 AAGCTGGACAGGCAAGACCGGAACAACACAATAATACACGGAACAATATCTGGCGGACGG 240 consensus_4118#1 ------------------------------------------------------------ consensus_4118#0 TTTGTTTTGTTTTCCCCAGTGCATGAAAACAATCATCAACACGGATTGAAAACGGGTCGA 300 consensus_4118#1 ------------------------------------------------------------ consensus_4118#0 TGAATGCATTACGGACGAGGGTCGAGAGGAAGGACAAAAACCATTTCAACTCTAACTAGC 360 consensus_4118#1 ----------CCTTATACAGCTTGA--TGTAGCACT----CTATATTAGCTTCAAAATCG 44 * * * * ** * ** ** * ** * * ** ** consensus_4118#0 GACTACAAATATACAGTATACACTATTACGCTCTTACAAAGCAGAAACCCCACCGTGTGG 420 consensus_4118#1 AATCACAACAATGAGAAGTG---TTTTGAATTGTATGGAAACAGAAA---CACTGAAAGG 98 * **** ** * * ** * * ** ****** *** * ** consensus_4118#0 TTTTGTTGACAGTTTGACAGTTGCCTATACGCTGATACTAACCCCTATAGTACGAACTGA 480 consensus_4118#1 TTCG--TAATAATATGCGTTTCGCCT-----CTGACTGTGTATCTGTGTGTGTGTGTTTA 151 ** * * * * ** * **** **** * * ** * * * consensus_4118#0 AGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCT--CTCTCGCGTGTCCTTTTACCTTCCC 538 consensus_4118#1 AGTGTTTGTGTGTACTATTTGTTAAACCCCTCCTGCACTCACTCTTCCACACACACACCG 211 ** * * * * * * *** ** ** * *** * *** ** ** consensus_4118#0 TCTCCCCCCAACCACTTAGCCAGGTTTCTCTGAGCTGAACTCAGAACTTTCCACTCTACT 598 consensus_4118#1 GTTCGCTTCCACAACCTTATCGCTGCCCCAAGTGTTCCTTCTCTTGCCTTCTGTCCAACC 271 ** * * ** ** * * * * * * * *** * ** consensus_4118#0 AGTGGTTGCTTCGTTTTCATCCCCCCCACCAGTTAGATTAGTTAGCTGAGCGAAGTAGCG 658 consensus_4118#1 TCTTCTCAAAA-GCTAACGTGCGTCGTACGTTCGTCGCTTGCGAGAAGAG-GTTGGACAG 329 * * * * * * * * ** * * ** *** * * * * consensus_4118#0 AGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCA 718 consensus_4118#1 AGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCA 389 ************************************************************ consensus_4118#0 CCCCAATTCTTCCCACCAATACACCGCCCCCTGACCCTTTCCATCAGGTGCGGTTAGAGC 778 consensus_4118#1 CCCCAATTCTTCCCACCAATACACCGCCCTCTGACCCTTTCCATCAGGAGCGGTTAGAGC 449 ***************************** ****************** *********** consensus_4118#0 GAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAACAAAACGAGACGAAGCAAAAA 838 consensus_4118#1 GAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAAAAA---GAGATGAAGCGAAAA 506 *************************************** ** **** ***** **** consensus_4118#0 CTGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACA 898 consensus_4118#1 ATGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACA 566 *********************************************************** consensus_4118#0 GAGGGTGTTTACACCCGGTTAAAGCGAGACGTGTTAAAAGTGTGTACGAAAGGAGCAAGA 958 consensus_4118#1 AAGGGTGTTTACACCCGGTTAAAGCGTGACGTGTTAAAAGTGTGTCAGAAAGTAG----- 621 ************************* ****************** ***** ** consensus_4118#0 GCCGCTACCGAATCAACCAAGACAAGACAGCAAAACTAGCGCGAGTCAGAAAGACAGAGC 1018 consensus_4118#1 ------------------------------------------------------------ consensus_4118#0 AG 1020 consensus_4118#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||