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Anopheles gambiae
cluster # 4118 cluster # 4118       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4118#0 length = 1020 sequences # 2  
consensus_4118#1 length = 621 sequences # 1  

consensusID : consensus_4118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1020
fasta sequence
                              [CCGTAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGAGAAAAAAACATAACACAAAAACAATAAACACACACTCTAGTGTAGAGTTAAACTGTATTTAAAGCAAAAGAGAAAAACAAAACAGCATGCAAACCTGATAGGAAAACGTCTTACCAAAGCAAGCTGGACAGGCAAGACCGGAACAACACAATAATACACGGAACAATATCTGGCGGACGGTTTGTTTTGTTTTCCCCAGTGCATGAAAACAATCATCAACACGGATTGAAAACGGGTCGATGAATGCATTACGGACGAGGGTCGAGAGGAAGGACAAAAACCATTTCAACTCTAACTAGCGACTACAAATATACAGTATACACTATTACGCTCTTACAAAGCAGAAACCCCACCGTGTGGTTTTGTTGACAGTTTGACAGTTGCCTATACGCTGATACTAACCCCTATAGTACGAACTGAAGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCTCTCTCGCGTGTCCTTTTACCTTCCCTCTCCCCCCAACCACTTAGCCAGGTTTCTCTGAGCTGAACTCAGAACTTTCCACTCTACTAGTGGTTGCTTCGTTTTCATCCCCCCCACCAGTTAGATTAGTTAGCTGAGCGAAGTAGCGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCCCTGACCCTTTCCATCAGGTGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAACAAAACGAGACGAAGCAAAAACTGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAGAGGGTGTTTACACCCGGTTAAAGCGAGACGTGTTAAAAGTGTGTACGAAAGGAGCAAGAGCCGCTACCGAATCAACCAAGACAAGACAGCAAAACTAGCGCGAGTCAGAAAGACAGAGCAG]

[+] EMBL BM639483             [CCGTAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGAGAAAAAAACATAACACAAAAACAATAAACACACACTCTAGTGTAGAGTTAAACTGTATTTAAAGCAAAAGAGAAAAACAAAACAGCATGCAAACCTGATAGGAAAACGTCTTACCAAAGCAAGCTGGACAGGCAAGACCGGAACAACACAATAATACACGGAACAATATCTGGCGGACGGTTTGTTTTGTTTTCCCCAGTGCATGAAAACAATCATCAACACGGATTGAAAACGGGTCGATGAATGCATTACGGACGAGGGTCGAGAGGAAGGACAAAAACCATTTCAACTCTAACTAGCGACTACAAATATACAGTATACACTATTACGCTCTTACAAAGCAGAAACCCCACCGTGTGGTTTTGTTGACAGTTTGACAGTTGCCTATACGCTGATACTAACCCCTATAGTACGAACTGAAGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCTCTCTCGCGTGTCCTTTTACCTTCCCTCTCCCCCCAACCACTTAGCCAGGTTTCTCTGAGCTGAACTCAGAACTTTCCACTCTACTAGTGGTTGCTTCGTTTTCATCCCCCCC                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM592844             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ccGAAGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCTCTCACGCGTGTCCTTTTACTTCCCCTCTCTCCCCAACCTCTTAGCCAGGTTTCTCTGAGCTGAACTCAGAATTTTCCACTCCACTAACGTTTGCTTCGTTTTCATCCCCCCCACCAGTTAGATTAGTTAGCTGAGCGAAGTAGCGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCCCTGACCCTTTCCATCAGGTGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAACAAAACGAGACGAAGCAAAAACTGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAGAGGGTGTTTACACCCGGTTAAAGCGAGACGTGTTAAAAGTGTGTACGAAAGGAGCAAGAGCCGCTACCGAATCAACCAAGACAAGACAGCAAAACTAGCGCGAGTCAGAAAGACAGAGCAG]


>consensus_4118#0 CCGTAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGA GAAAAAAACATAACACAAAAACAATAAACACACACTCTAGTGTAGAGTTAAACTGTATTT AAAGCAAAAGAGAAAAACAAAACAGCATGCAAACCTGATAGGAAAACGTCTTACCAAAGC AAGCTGGACAGGCAAGACCGGAACAACACAATAATACACGGAACAATATCTGGCGGACGG TTTGTTTTGTTTTCCCCAGTGCATGAAAACAATCATCAACACGGATTGAAAACGGGTCGA TGAATGCATTACGGACGAGGGTCGAGAGGAAGGACAAAAACCATTTCAACTCTAACTAGC GACTACAAATATACAGTATACACTATTACGCTCTTACAAAGCAGAAACCCCACCGTGTGG TTTTGTTGACAGTTTGACAGTTGCCTATACGCTGATACTAACCCCTATAGTACGAACTGA AGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCTCTCTCGCGTGTCCTTTTACCTTCCCTC TCCCCCCAACCACTTAGCCAGGTTTCTCTGAGCTGAACTCAGAACTTTCCACTCTACTAG TGGTTGCTTCGTTTTCATCCCCCCCACCAGTTAGATTAGTTAGCTGAGCGAAGTAGCGAG CTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACC CCAATTCTTCCCACCAATACACCGCCCCCTGACCCTTTCCATCAGGTGCGGTTAGAGCGA AGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAACAAAACGAGACGAAGCAAAAACT GATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAGA GGGTGTTTACACCCGGTTAAAGCGAGACGTGTTAAAAGTGTGTACGAAAGGAGCAAGAGC CGCTACCGAATCAACCAAGACAAGACAGCAAAACTAGCGCGAGTCAGAAAGACAGAGCAG



consensusID : consensus_4118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence
                              [CCTTATACAGCTTGATGTAGCACTCTATATTAGCTTCAAAATCGAATCACAACAATGAGAAGTGTTTTGAATTGTATGGAAACAGAAACACTGAAAGGTTCGTAATAATATGCGTTTCGCCTCTGACTGTGTATCTGTGTGTGTGTGTTTAAGTGTTTGTGTGTACTATTTGTTAAACCCCTCCTGCACTCACTCTTCCACACACACACCGGTTCGCTTCCACAACCTTATCGCTGCCCCAAGTGTTCCTTCTCTTGCCTTCTGTCCAACCTCTTCTCAAAAGCTAACGTGCGTCGTACGTTCGTCGCTTGCGAGAAGAGGTTGGACAGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCTCTGACCCTTTCCATCAGGAGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAAAAAGAGATGAAGCGAAAAATGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAAAGGGTGTTTACACCCGGTTAAAGCGTGACGTGTTAAAAGTGTGTCAGAAAGTAG]

[-] EMBL BX617311             [CCTTATACAGCTTGATGTAGCACTCTATATTAGCTTCAAAATCGAATCACAACAATGAGAAGTGTTTTGAATTGTATGGAAACAGAAACACTGAAAGGTTCGTAATAATATGCGTTTCGCCTCTGACTGTGTATCTGTGTGTGTGTGTTTAAGTGTTTGTGTGTACTATTTGTTAAACCCCTCCTGCACTCACTCTTCCACACACACACCGGTTCGCTTCCACAACCTTATCGCTGCCCCAAGTGTTCCTTCTCTTGCCTTCTGTCCAACCTCTTCTCAAAAGCTAACGTGCGTCGTACGTTCGTCGCTTGCGAGAAGAGGTTGGACAGAGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCTCTGACCCTTTCCATCAGGAGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAAAAAGAGATGAAGCGAAAAATGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACAAAGGGTGTTTACACCCGGTTAAAGCGTGACGTGTTAAAAGTGTGTCAGAAAGTAG]


>consensus_4118#1 CCTTATACAGCTTGATGTAGCACTCTATATTAGCTTCAAAATCGAATCACAACAATGAGA AGTGTTTTGAATTGTATGGAAACAGAAACACTGAAAGGTTCGTAATAATATGCGTTTCGC CTCTGACTGTGTATCTGTGTGTGTGTGTTTAAGTGTTTGTGTGTACTATTTGTTAAACCC CTCCTGCACTCACTCTTCCACACACACACCGGTTCGCTTCCACAACCTTATCGCTGCCCC AAGTGTTCCTTCTCTTGCCTTCTGTCCAACCTCTTCTCAAAAGCTAACGTGCGTCGTACG TTCGTCGCTTGCGAGAAGAGGTTGGACAGAGCTGCTAGAGAGGACAGCCGTGGAGACATA CTACAGATACGTTTTTGAATTACATCCCACCCCAATTCTTCCCACCAATACACCGCCCTC TGACCCTTTCCATCAGGAGCGGTTAGAGCGAAGAGAAATGCCAGTAAACATGATTAAAAA AGTAAAAAAAAGAGATGAAGCGAAAAATGATGTTAAAACTAATAAAAATACTATTAAACA AAGTGAAACTTAAAAACGAGCAAACAAAGGGTGTTTACACCCGGTTAAAGCGTGACGTGT TAAAAGTGTGTCAGAAAGTAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4118#0      CCGTAAATGACAGATGGGACATAAGTGCGCGACATAAAATGCAAAGCAAATAAAGAGAGA 60
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      GAAAAAAACATAACACAAAAACAATAAACACACACTCTAGTGTAGAGTTAAACTGTATTT 120
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      AAAGCAAAAGAGAAAAACAAAACAGCATGCAAACCTGATAGGAAAACGTCTTACCAAAGC 180
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      AAGCTGGACAGGCAAGACCGGAACAACACAATAATACACGGAACAATATCTGGCGGACGG 240
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      TTTGTTTTGTTTTCCCCAGTGCATGAAAACAATCATCAACACGGATTGAAAACGGGTCGA 300
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      TGAATGCATTACGGACGAGGGTCGAGAGGAAGGACAAAAACCATTTCAACTCTAACTAGC 360
consensus_4118#1      ----------CCTTATACAGCTTGA--TGTAGCACT----CTATATTAGCTTCAAAATCG 44
                                 *  *    * * **   * ** **     * ** * * **  **     

consensus_4118#0      GACTACAAATATACAGTATACACTATTACGCTCTTACAAAGCAGAAACCCCACCGTGTGG 420
consensus_4118#1      AATCACAACAATGAGAAGTG---TTTTGAATTGTATGGAAACAGAAA---CACTGAAAGG 98
                       *  ****  **      *    * **    * *    ** ******   *** *   **

consensus_4118#0      TTTTGTTGACAGTTTGACAGTTGCCTATACGCTGATACTAACCCCTATAGTACGAACTGA 480
consensus_4118#1      TTCG--TAATAATATGCGTTTCGCCT-----CTGACTGTGTATCTGTGTGTGTGTGTTTA 151
                      **    * * * * **    * ****     ****   *    *     **  *   * *

consensus_4118#0      AGAGCGAGAGCGAGAGAGATAGGAAAGCCTTCT--CTCTCGCGTGTCCTTTTACCTTCCC 538
consensus_4118#1      AGTGTTTGTGTGTACTATTTGTTAAACCCCTCCTGCACTCACTCTTCCACACACACACCG 211
                      ** *   * * *    *  *   *** ** **   * *** *   ***    **   ** 

consensus_4118#0      TCTCCCCCCAACCACTTAGCCAGGTTTCTCTGAGCTGAACTCAGAACTTTCCACTCTACT 598
consensus_4118#1      GTTCGCTTCCACAACCTTATCGCTGCCCCAAGTGTTCCTTCTCTTGCCTTCTGTCCAACC 271
                        ** *  * ** ** *   *      *   * * *          * ***    * ** 

consensus_4118#0      AGTGGTTGCTTCGTTTTCATCCCCCCCACCAGTTAGATTAGTTAGCTGAGCGAAGTAGCG 658
consensus_4118#1      TCTTCTCAAAA-GCTAACGTGCGTCGTACGTTCGTCGCTTGCGAGAAGAG-GTTGGACAG 329
                        *  *      * *  * * *  *  **         * *  **  *** *  * *  *

consensus_4118#0      AGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCA 718
consensus_4118#1      AGCTGCTAGAGAGGACAGCCGTGGAGACATACTACAGATACGTTTTTGAATTACATCCCA 389
                      ************************************************************

consensus_4118#0      CCCCAATTCTTCCCACCAATACACCGCCCCCTGACCCTTTCCATCAGGTGCGGTTAGAGC 778
consensus_4118#1      CCCCAATTCTTCCCACCAATACACCGCCCTCTGACCCTTTCCATCAGGAGCGGTTAGAGC 449
                      ***************************** ****************** ***********

consensus_4118#0      GAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAACAAAACGAGACGAAGCAAAAA 838
consensus_4118#1      GAAGAGAAATGCCAGTAAACATGATTAAAAAAGTAAAAAAAA---GAGATGAAGCGAAAA 506
                      *************************************** **   **** ***** ****

consensus_4118#0      CTGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACA 898
consensus_4118#1      ATGATGTTAAAACTAATAAAAATACTATTAAACAAAGTGAAACTTAAAAACGAGCAAACA 566
                       ***********************************************************

consensus_4118#0      GAGGGTGTTTACACCCGGTTAAAGCGAGACGTGTTAAAAGTGTGTACGAAAGGAGCAAGA 958
consensus_4118#1      AAGGGTGTTTACACCCGGTTAAAGCGTGACGTGTTAAAAGTGTGTCAGAAAGTAG----- 621
                       ************************* ******************  ***** **     

consensus_4118#0      GCCGCTACCGAATCAACCAAGACAAGACAGCAAAACTAGCGCGAGTCAGAAAGACAGAGC 1018
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      AG 1020
consensus_4118#1      --
                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)