These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 981 fasta sequence [ACGGGCTGAAATGAATGAATGTGCAGAAGAGTGAACAAGCGAGTCGAATGAGTCGAAGGACGACTTCTTAAAACGGTGAGTTTGTCACCGCATTAGCATTATACGAAAAGTAACGAAAAGCTGCACAATGCAGACATGATTGCACTTGTTTCATATTTTAGTTAAGCGTGATGCTCCTTTTTTTTAAAGCATGTATCTATACGGATACTATCATAAGCATGCGACATAATACTACCAAAAAGAGAAAATGTAAGGGGAAAACGAAATTCTGAACTAAATAAGGAAAGAAGGTGCACAACGCAACCTGCAGTTGCACTATACAGATTCAGCTGATTCTCTCAGCAACAGCTCAGAATCACCTTGGTGTAGCACTGGGGAAGAGAGAACAGAGAGAGAGAGAGAGAGAGAGTGGGAGAAAGAGAATTAGAGGGACAAAGAAAACTGCGTTAGGCAATTGTTTTTTGAATAGTAGAGATAAGAAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTATATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGAGATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTCAAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTAGGGAAGGGGGCTAGTTCAAGTTGTAGGTATGAGAAATGATAAAAAATGAGAGTAGAAATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGTGGAGGGAAAAGGCCAAATGGGAAGGTAGTTGAGAAGGTGATTTGCACGGGAGAACGCTCTTAAACACAATATTCTAACCGCAAACACTAACCAGAGGAGGAAATGTGTTCCGACCTCCTCCCCCAATCTCCCCCCCAATACAANGG] [+] EMBL BX623726 [ACGGGCTGAAATGAATGAATGTGCAGAAGAGTGAACAAGCGAGTCGAATGAGTCGAAGGACGACTTCTTAAAACGGTGAGTTTGTCACCGCATTAGCATTATACGAAAAGTAACGAAAAGCTGCACAATGCAGACATGATTGCACTTGTTTCATATTTTAGTTAAGCGTGATGCTCCTTTTTTTTAAAGCATGTATCTATACGGATACTATCATAAGCATGCGACATAATACTACCAAAAAGAGAAAATGTAAGGGGAAAACGAAATTCTGAACTAAATAAGGAAAGAAGGTGCACAACGCAACCTGCAGTTGCACTATACAGATTCAGCTGATTCTCTCAGCAACAGCTCAGAATCACCTTGGTGTAGCACTGGGGAAGAGAGAACAGAGAGAGAGAGAGAGAGAGAGTGGGAGAAAGAGAATTAGAGGGACAAAGAAAACTGCGTTAGGCAATTGTTTTTTGAATAGTAGAGATAAGAAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTATATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGAGATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTCAAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTT ] [+] EMBL BX626363 [ ACTATACAGATTCAGCTGATTCTCTCAGCAACAGCTCAGAATCACCTTGGTGTAGCACTGGGGAAGAGAGAACAGAGAGAGAGAGAGAGAGAGAGTGGGAGAAAGAGAATTAGAGGGACAAAGAAAACTGCGTTAGGCAATTGTTTTTTGAATAGTAGAGATAAGAAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTATATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGAGATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTCAAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTAGGGAAGGGGGCTAGTTCAAGTTGTAGGTATGAGAAATGATAAAAAATGAGAGTAGAAATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGTGGAGGGAAAAGGCCAAATGGGAAGGTAGTTGAGAAGGTGATTTGCACGGGAGAACGCTCTTAAACACAATATTCTAACCGCAAACACTAACCAGAGGAGGAAATGTGTTCCGACCTCCTCCCCCAATCTCCCCCCCAATACAANGG] consensusID : consensus_4128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [CAGATCCCCCACGAGNTAAAAAACTGCGTTAGGCAATTGTTCTTTTGAATAGTAGAGATAAGAAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTATATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGAGATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTCAAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTAGGGGAAGGGGGCTAGTTGCAAGTTGTAGGTATGAGAAATGATAAGAGAAATGAGAGTAGAAATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGTGGAGGG] [+] EMBL BX466561 [CAGATCCCCCACGAGNTAAAAAACTGCGTTAGGCAATTGTTCTTTTGAATAGTAGAGATAAGAAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTATATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGAGATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTCAAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTAGGGGAAGGGGGCTAGTTGCAAGTTGTAGGTATGAGAAATGATAAGAGAAATGAGAGTAGAAATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGTGGAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4128#0 ACGGGCTGAAATGAATGAATGTGCAGAAGAGTGAACAAGCGAGTCGAATGAGTCGAAGGA 60 consensus_4128#1 ------------------------------------------------------------ consensus_4128#0 CGACTTCTTAAAACGGTGAGTTTGTCACCGCATTAGCATTATACGAAAAGTAACGAAAAG 120 consensus_4128#1 ------------------------------------------------------------ consensus_4128#0 CTGCACAATGCAGACATGATTGCACTTGTTTCATATTTTAGTTAAGCGTGATGCTCCTTT 180 consensus_4128#1 ------------------------------------------------------------ consensus_4128#0 TTTTTAAAGCATGTATCTATACGGATACTATCATAAGCATGCGACATAATACTACCAAAA 240 consensus_4128#1 ------------------------------------------------------------ consensus_4128#0 AGAGAAAATGTAAGGGGAAAACGAAATTCTGAACTAAATAAGGAAAGAAGGTGCACAACG 300 consensus_4128#1 ------------------------------------------------------------ consensus_4128#0 CAACCTGCAGTTGCACTATACAGATTCAGCTGATTCTCTCAGCAACAGCTCAGAATCACC 360 consensus_4128#1 ------------------------------------------------------------ consensus_4128#0 TTGGTGTAGCACTGGGGAAGAGAGAACAGAGAGAGAGAGAGAGAGAGAGTGGGAGAAAGA 420 consensus_4128#1 ----------------------------------------------------------CA 2 * consensus_4128#0 GAATTAGAGGGACAAAGAAAACTGCGTTAGGCAATTGTT-TTTTGAATAGTAGAGATAAG 479 consensus_4128#1 GATCCCCCACGAGNTAAAAAACTGCGTTAGGCAATTGTTCTTTTGAATAGTAGAGATAAG 62 ** ** * ********************** ******************** consensus_4128#0 AAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTAT 539 consensus_4128#1 AAGAAACAGATATAAAGTGAATTAGCTCACACAAATCTATATATATATATATACAATTAT 122 ************************************************************ consensus_4128#0 ATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGA 599 consensus_4128#1 ATATATTCACATACACAGAAAGTCACAGAAGAAAAGCACGCTGCGTGCACAGCAAAAGGA 182 ************************************************************ consensus_4128#0 GATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTC 659 consensus_4128#1 GATTTAAATGCAAAAATCAATGGAAGGTTAACAAATGAATCGTATTACTTTCCCGTACTC 242 ************************************************************ consensus_4128#0 AAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTA 719 consensus_4128#1 AAACTCAACGTTGCAGGGGTTTTTTGCGATATGACGCACTTTTGCTAGCAGTGGGAAGTA 302 ************************************************************ consensus_4128#0 GGG-AAGGGGGCTAGTT-CAAGTTGTAGGTATGAGAAATGATAAAA--AATGAGAGTAGA 775 consensus_4128#1 GGGGAAGGGGGCTAGTTGCAAGTTGTAGGTATGAGAAATGATAAGAGAAATGAGAGTAGA 362 *** ************* ************************** * ************ consensus_4128#0 AATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGT 835 consensus_4128#1 AATATCAAAAGTTTGTCTAAAGGAAAGTGTTCCCTCTTACAATACCCTCGCCAGCAGTGT 422 ************************************************************ consensus_4128#0 GGAGGGAAAAGGCCAAATGGGAAGGTAGTTGAGAAGGTGATTTGCACGGGAGAACGCTCT 895 consensus_4128#1 GGAGGG------------------------------------------------------ 428 ****** consensus_4128#0 TAAACACAATATTCTAACCGCAAACACTAACCAGAGGAGGAAATGTGTTCCGACCTCCTC 955 consensus_4128#1 ------------------------------------------------------------ consensus_4128#0 CCCCAATCTCCCCCCCAATACAANGG 981 consensus_4128#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||