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Anopheles gambiae
cluster # 4134 cluster # 4134       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4134#0 length = 969 sequences # 2  
consensus_4134#1 length = 729 sequences # 1  

consensusID : consensus_4134#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 969
fasta sequence
                              [CTGAGCATGGTACAATACGGTTCAACAACGTTGATCTGCGGTACTCGGACGATGGAGAGCGTGTACTAAAGGACCTTAATTTTACCATTCGTTCGAACGAGAAGGTTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAACTGATTCAAACTACGATTCGTACAAAATTTGCCCACTGCACAGTATTAACNATTGCGCATCGATTAAACACGGTTATGGACAGTGATAGAGTGTTGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCTATCTACGGCGACTAGTGGACCAAACTGGTGTTGCTACGGCAGCAATGTTGATGCGTACTGCTGAGGATAATTTTAAAAAATCTAGTGCACGGCAGACGGAAGCAATTACACTGGGATTGTCATGAGACAAGGTCTAAAAGAAAATATACACACTTGCTGCATAAATGCTTAGATTATTTTATGTACAGTATTTATGTACAACATAAACTACGAGCAATATTTTGTGTCAATTGTCACTGAAAGTAAGATTGAAATCAATAAAGAAATATAAAA]

[+] EMBL BX627923             [CTGAGCATGGTACAATACGGTTCAACAACGTTGATCTGCGGTACTCGGACGATGGAGAGCGTGTACTAAAGGACCTTAATTTTACCATTCGTTCGAACGAGAAGGTTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAACTGATTCAAACTACGATTCGTACAAAATTTGCCCACTGCACAGTATTAACNATTGCGCATCGATTAAACACGGTTATGGACAGTGATAGAGTGTT                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX612777             [                                                                                                                                                                                                                    ACCTTGCGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAACTGATTCAAACTACGATTCGTACAAAATTTGCCCACTGCACAGTATTAACAATTGCGCATCGATTAAACACGGTTATGGACAGTGATAGAGTGTTGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCTATCTACGGCGACTAGTGGACCAAACTGGTGTTGCTACGGCAGCAATGTTGATGCGTACTGCTGAGGATAATTTTAAAAAATCTAGTGCACGGCAGACGGAAGCAATTACACTGGGATTGTCATGAGACAAGGTCTAAAAGAAAATATACACACTTGCTGCATAAATGCTTAGATTATTTTATGTACAGTATTTATGTACAACATAAACTACGAGCAATATTTTGTGTCAATTGTCACTGAAAGTAAGATTGAAATCAATAAAGAAATATAAAA]


>consensus_4134#0 CTGAGCATGGTACAATACGGTTCAACAACGTTGATCTGCGGTACTCGGACGATGGAGAGC GTGTACTAAAGGACCTTAATTTTACCATTCGTTCGAACGAGAAGGTTGGCATCGTGGGAC GTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGG GAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCA AAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGG ATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGA AAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCA ATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATA AAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAACTGATTC AAACTACGATTCGTACAAAATTTGCCCACTGCACAGTATTAACNATTGCGCATCGATTAA ACACGGTTATGGACAGTGATAGAGTGTTGGTGATGGACGCTGGACGCGTAGTCGAGTTTG GGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCTATCTACGGCGACTAGTGGACCAAA CTGGTGTTGCTACGGCAGCAATGTTGATGCGTACTGCTGAGGATAATTTTAAAAAATCTA GTGCACGGCAGACGGAAGCAATTACACTGGGATTGTCATGAGACAAGGTCTAAAAGAAAA TATACACACTTGCTGCATAAATGCTTAGATTATTTTATGTACAGTATTTATGTACAACAT AAACTACGAGCAATATTTTGTGTCAATTGTCACTGAAAGTAAGATTGAAATCAATAAAGA AATATAAAA



consensusID : consensus_4134#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 729
fasta sequence
                              [CAGAATCGCCACNAGGTTGNAAGGTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAAGCTGATTCAAACTACGATTCGTACAAAATTTGCCCACGTGCACAGTATTAACAATTGCGCATCGATTNAANACACGGTTATGGACAGTGATAGAGTGTTCGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCCTATCTAACGGCGACTAGTGGACCAAAACTGGTGTTGCTACGGCAAGCNCAATGTCTAGATGCGTAACTTGCTGAGGGATACGTTNTAANACAGANAATTCTAGGTGCACG]

[+] EMBL BX466575             [CAGAATCGCCACNAGGTTGNAAGGTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAAGCTGATTCAAACTACGATTCGTACAAAATTTGCCCACGTGCACAGTATTAACAATTGCGCATCGATTNAANACACGGTTATGGACAGTGATAGAGTGTTCGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCCTATCTAACGGCGACTAGTGGACCAAAACTGGTGTTGCTACGGCAAGCNCAATGTCTAGATGCGTAACTTGCTGAGGGATACGTTNTAANACAGANAATTCTAGGTGCACG]


>consensus_4134#1 CAGAATCGCCACNAGGTTGNAAGGTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTC CTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACAT AGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGA TCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGA CGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGC CGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCA ACTTGTTTGTCTCGCTAGAGCCATTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCC ACTGCCAATGTAGATCCGGAAACGGATAAAGCTGATTCAAACTACGATTCGTACAAAATT TGCCCACGTGCACAGTATTAACAATTGCGCATCGATTNAANACACGGTTATGGACAGTGA TAGAGTGTTCGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGGCATCCGCATGAGCTT CTGCACGGTCCGATTGGCCTATCTAACGGCGACTAGTGGACCAAAACTGGTGTTGCTACG GCAAGCNCAATGTCTAGATGCGTAACTTGCTGAGGGATACGTTNTAANACAGANAATTCT AGGTGCACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4134#0      CTGAGCATGGTACAATACGGTTCAACAACGTTGATCTGCGGTACTCGGACGATGGAGAGC 60
consensus_4134#1      ------------------------------------------------------------
                                                                                  

consensus_4134#0      GTGTACTAAAGGACCTTAATTTTACCATTCGTTCGAACGAGAAGGTTGGCATCGTGGGAC 120
consensus_4134#1      ----------------------CAGAATCGCCACNAGGTTGNAAGGTGGCATCGTGGGAC 38
                                             *  **     * *    * * * **************

consensus_4134#0      GTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGG 180
consensus_4134#1      GTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGG 98
                      ************************************************************

consensus_4134#0      GAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCA 240
consensus_4134#1      GAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCA 158
                      ************************************************************

consensus_4134#0      AAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGG 300
consensus_4134#1      AAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGG 218
                      ************************************************************

consensus_4134#0      ATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGA 360
consensus_4134#1      ATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGA 278
                      ************************************************************

consensus_4134#0      AAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCA 420
consensus_4134#1      AAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCA 338
                      ************************************************************

consensus_4134#0      ATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATA 480
consensus_4134#1      ATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTT-GAGAAACAATA 397
                      ************************************************ ***********

consensus_4134#0      AAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAA-CTGATT 539
consensus_4134#1      AAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAAGCTGATT 457
                      ***************************************************** ******

consensus_4134#0      CAAACTACGATTCGTACAAAATTTGCCCAC-TGCACAGTATTAACNATTGCGCATCGATT 598
consensus_4134#1      CAAACTACGATTCGTACAAAATTTGCCCACGTGCACAGTATTAACAATTGCGCATCGATT 517
                      ****************************** ************** **************

consensus_4134#0      AAACAC--GGTTATGGACAGTGATAGAGTGTT-GGTGATGGACGCTGGACGCGTAGTCGA 655
consensus_4134#1      NAANACACGGTTATGGACAGTGATAGAGTGTTCGGTGATGGACGCTGGACGCGTAGTCGA 577
                       ** **  ************************ ***************************

consensus_4134#0      GTTTGGG-CATCCGCATGAGCTTCTGCACGGTCCGATTGGC-TATCTA-CGGCGACTAGT 712
consensus_4134#1      GTTTGGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCCTATCTAACGGCGACTAGT 637
                      ******* ********************************* ****** ***********

consensus_4134#0      GGACCAAA-CTGGTGTTGCTACGGCA---GCAATGTT--GATGCGTA--CTGCTGAGG-A 763
consensus_4134#1      GGACCAAAACTGGTGTTGCTACGGCAAGCNCAATGTCTAGATGCGTAACTTGCTGAGGGA 697
                      ******** *****************    ******   ********   ******** *

consensus_4134#0      TA-ATTTTAAAAAATCTAGTGCACGGCAGACGGAAGCAATTACACTGGGATTGTCATGAG 822
consensus_4134#1      TACGTTNTAANACAGANAATTCTAGGTGCACG---------------------------- 729
                      **  ** *** * *   * * *  **   ***                            

consensus_4134#0      ACAAGGTCTAAAAGAAAATATACACACTTGCTGCATAAATGCTTAGATTATTTTATGTAC 882
consensus_4134#1      ------------------------------------------------------------
                                                                                  

consensus_4134#0      AGTATTTATGTACAACATAAACTACGAGCAATATTTTGTGTCAATTGTCACTGAAAGTAA 942
consensus_4134#1      ------------------------------------------------------------
                                                                                  

consensus_4134#0      GATTGAAATCAATAAAGAAATATAAAA 969
consensus_4134#1      ---------------------------
                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)