These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 969 fasta sequence [CTGAGCATGGTACAATACGGTTCAACAACGTTGATCTGCGGTACTCGGACGATGGAGAGCGTGTACTAAAGGACCTTAATTTTACCATTCGTTCGAACGAGAAGGTTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAACTGATTCAAACTACGATTCGTACAAAATTTGCCCACTGCACAGTATTAACNATTGCGCATCGATTAAACACGGTTATGGACAGTGATAGAGTGTTGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCTATCTACGGCGACTAGTGGACCAAACTGGTGTTGCTACGGCAGCAATGTTGATGCGTACTGCTGAGGATAATTTTAAAAAATCTAGTGCACGGCAGACGGAAGCAATTACACTGGGATTGTCATGAGACAAGGTCTAAAAGAAAATATACACACTTGCTGCATAAATGCTTAGATTATTTTATGTACAGTATTTATGTACAACATAAACTACGAGCAATATTTTGTGTCAATTGTCACTGAAAGTAAGATTGAAATCAATAAAGAAATATAAAA] [+] EMBL BX627923 [CTGAGCATGGTACAATACGGTTCAACAACGTTGATCTGCGGTACTCGGACGATGGAGAGCGTGTACTAAAGGACCTTAATTTTACCATTCGTTCGAACGAGAAGGTTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAACTGATTCAAACTACGATTCGTACAAAATTTGCCCACTGCACAGTATTAACNATTGCGCATCGATTAAACACGGTTATGGACAGTGATAGAGTGTT ] [+] EMBL BX612777 [ ACCTTGCGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAACTGATTCAAACTACGATTCGTACAAAATTTGCCCACTGCACAGTATTAACAATTGCGCATCGATTAAACACGGTTATGGACAGTGATAGAGTGTTGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCTATCTACGGCGACTAGTGGACCAAACTGGTGTTGCTACGGCAGCAATGTTGATGCGTACTGCTGAGGATAATTTTAAAAAATCTAGTGCACGGCAGACGGAAGCAATTACACTGGGATTGTCATGAGACAAGGTCTAAAAGAAAATATACACACTTGCTGCATAAATGCTTAGATTATTTTATGTACAGTATTTATGTACAACATAAACTACGAGCAATATTTTGTGTCAATTGTCACTGAAAGTAAGATTGAAATCAATAAAGAAATATAAAA] consensusID : consensus_4134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence [CAGAATCGCCACNAGGTTGNAAGGTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAAGCTGATTCAAACTACGATTCGTACAAAATTTGCCCACGTGCACAGTATTAACAATTGCGCATCGATTNAANACACGGTTATGGACAGTGATAGAGTGTTCGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCCTATCTAACGGCGACTAGTGGACCAAAACTGGTGTTGCTACGGCAAGCNCAATGTCTAGATGCGTAACTTGCTGAGGGATACGTTNTAANACAGANAATTCTAGGTGCACG] [+] EMBL BX466575 [CAGAATCGCCACNAGGTTGNAAGGTGGCATCGTGGGACGTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGGGAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCAAAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGGATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGAAAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCAATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTGAGAAACAATAAAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAAGCTGATTCAAACTACGATTCGTACAAAATTTGCCCACGTGCACAGTATTAACAATTGCGCATCGATTNAANACACGGTTATGGACAGTGATAGAGTGTTCGGTGATGGACGCTGGACGCGTAGTCGAGTTTGGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCCTATCTAACGGCGACTAGTGGACCAAAACTGGTGTTGCTACGGCAAGCNCAATGTCTAGATGCGTAACTTGCTGAGGGATACGTTNTAANACAGANAATTCTAGGTGCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4134#0 CTGAGCATGGTACAATACGGTTCAACAACGTTGATCTGCGGTACTCGGACGATGGAGAGC 60 consensus_4134#1 ------------------------------------------------------------ consensus_4134#0 GTGTACTAAAGGACCTTAATTTTACCATTCGTTCGAACGAGAAGGTTGGCATCGTGGGAC 120 consensus_4134#1 ----------------------CAGAATCGCCACNAGGTTGNAAGGTGGCATCGTGGGAC 38 * ** * * * * * ************** consensus_4134#0 GTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGG 180 consensus_4134#1 GTACTGGGGCTGGCAAATCGTCCTTGATTCAGGCACTTTTCAGACTCGCACCCTTCGAGG 98 ************************************************************ consensus_4134#0 GAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCA 240 consensus_4134#1 GAAATATTGAAATTGACGACATAGATACAAAGACCTTGGGTTTGCGCGATTTACGAAGCA 158 ************************************************************ consensus_4134#0 AAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGG 300 consensus_4134#1 AAATCTCTATTATACCTCAGGATCCCATTTTATTTTCCGGCACGTTGCGTAGCAATTTGG 218 ************************************************************ consensus_4134#0 ATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGA 360 consensus_4134#1 ATCCATTTGATCAGCGCAAGGACGATGAATTGTGGAGTGCTCTTGATCAGGTTGAGTTGA 278 ************************************************************ consensus_4134#0 AAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCA 420 consensus_4134#1 AAGAGGCCGTATCTTCGCTAGCCGGAGGTTTAGAGTGTCGCATGTCCGATGGAGGGAGCA 338 ************************************************************ consensus_4134#0 ATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTTTGAGAAACAATA 480 consensus_4134#1 ATTTCAGTATGGGCCAAAGGCAACTTGTTTGTCTCGCTAGAGCCATTT-GAGAAACAATA 397 ************************************************ *********** consensus_4134#0 AAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAA-CTGATT 539 consensus_4134#1 AAATCCTTGTTCTCGACGAAGCCACTGCCAATGTAGATCCGGAAACGGATAAAGCTGATT 457 ***************************************************** ****** consensus_4134#0 CAAACTACGATTCGTACAAAATTTGCCCAC-TGCACAGTATTAACNATTGCGCATCGATT 598 consensus_4134#1 CAAACTACGATTCGTACAAAATTTGCCCACGTGCACAGTATTAACAATTGCGCATCGATT 517 ****************************** ************** ************** consensus_4134#0 AAACAC--GGTTATGGACAGTGATAGAGTGTT-GGTGATGGACGCTGGACGCGTAGTCGA 655 consensus_4134#1 NAANACACGGTTATGGACAGTGATAGAGTGTTCGGTGATGGACGCTGGACGCGTAGTCGA 577 ** ** ************************ *************************** consensus_4134#0 GTTTGGG-CATCCGCATGAGCTTCTGCACGGTCCGATTGGC-TATCTA-CGGCGACTAGT 712 consensus_4134#1 GTTTGGGGCATCCGCATGAGCTTCTGCACGGTCCGATTGGCCTATCTAACGGCGACTAGT 637 ******* ********************************* ****** *********** consensus_4134#0 GGACCAAA-CTGGTGTTGCTACGGCA---GCAATGTT--GATGCGTA--CTGCTGAGG-A 763 consensus_4134#1 GGACCAAAACTGGTGTTGCTACGGCAAGCNCAATGTCTAGATGCGTAACTTGCTGAGGGA 697 ******** ***************** ****** ******** ******** * consensus_4134#0 TA-ATTTTAAAAAATCTAGTGCACGGCAGACGGAAGCAATTACACTGGGATTGTCATGAG 822 consensus_4134#1 TACGTTNTAANACAGANAATTCTAGGTGCACG---------------------------- 729 ** ** *** * * * * * ** *** consensus_4134#0 ACAAGGTCTAAAAGAAAATATACACACTTGCTGCATAAATGCTTAGATTATTTTATGTAC 882 consensus_4134#1 ------------------------------------------------------------ consensus_4134#0 AGTATTTATGTACAACATAAACTACGAGCAATATTTTGTGTCAATTGTCACTGAAAGTAA 942 consensus_4134#1 ------------------------------------------------------------ consensus_4134#0 GATTGAAATCAATAAAGAAATATAAAA 969 consensus_4134#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||