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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1097 fasta sequence
[CCGCGGTTATTCATCAGGGCATTATTCGTACTTCGTGCTTCTTCCCCCCTTGTGTGCAAACGCTTTCGACACTTTGAATGATTCTTCTTTTCAATAACTAGGCCATTTATGGATTGGTATTCGTGGCGTGACACCACCGCAAGCATTCCGGCGTGCAAGCAGGTCAGGGATTGTGGTAAACGCCCGCTGTTGATACACTGCACCAAGTTCGACATCCGCCAGTACTTTCTCATCACCTACACGAACAACGTGCTGAAGGTGTGGATGTACCGGAACTGCTACCTAAGGTTTAGCTCGCGCCAGTTCAATCTGGACGATTTTAGCGAATCGATCCATCTGACGAACTACTCCATCCAGAAGAACTACGCGAAGGAGGTGCGCGAGGGTGCGGATGCACTGCCCGCGAGCAACATGTGGTCACTGAAGCGCTTCCAGGAGCATCTGCAATCGCTCGACAAGGGTTTCTACTGGGAGCGCAAGATCTATCCGGACATGAAGAAGAACATCCTCGCCATCGTCTGCGCCAGCCTGGACGGGATGAAGATGGAGCGCAACATGTTTGAGCTGTATGGGGCCGATTTTATGGTGACGGAAAACTTTCGCACCATGCTTATCGAGATCAACACCAGCCCCGATCTGTCCTCGTCCACCGACGTAACGTCCGTCATTTGTCCGGCCGTGCTAGAAGATCTTGTAAAAGTTGTAATCGACAACACGAAGGACAAACGAGCTGGAACGGGACAATTCGAACTGATTCATTCACTAGAGATACCGCGTGTGGCACCGTACGGCTACGGACTGACCGTCGACGGACGTTCGATGCAATCGAAACATCGCTCCAAAAGTCCACTGTCCCCGATCAACACGTCCACAGGACCAACGGTCGCCTCTACCGCCACATCCACACCGAAGCGAAGCACAGCAGCGGCAGGAACGACCGTAGCAACAACAGTCGCAACAGGGGTAATAATATCGACCGGAGCAAATGGTGGGAATGCGAAACATTCGCGCTACGCCGCCAGTAGCTGAATCTTCCAGCAGAGGCAGCAAAACGTCGCTTACGAGCGTCATTTTAGACCGGNCGCGTACGACGCTGA]
[+] EMBL BM575479 [CCGCGGTTATTCATCAGGGCATTATTCGTACTTCGTGCTTCTTCCCCCCTTGTGTGCAAACGCTTTCGACACTTTGAATGATTCTTCTTTTCAATAACTAGGCCATTTATGGATTGGTATTCGTGGCGTGACACCACCGCAAGCATTCCGGCGTGCAAGCAGGTCAGGGATTGTGGTAAACGCCCGCTGTTGATACACTGCACCAAGTTCGACATCCGCCAGTACTTTCTCATCACCTACACGAACAACGTGCTGAAGGTGTGGATGTACCGGAACTGCTACCTAAGGTTTAGCTCGCGCCAGTTCAATCTGGACGATTTTAGCGAATCGATCCATCTGACGAACTACTCCATCCAGAAGAACTACGCGAAGGAGGTGCGCGAGGGTGCGGATGCACTGCCCGCGAGCAACATGTGGTCACTGAAGCGCTTCCAGGAGCATCTGCAATCGCTCGACAAGGGTTTCTACTGGGAGCGCAAGATCTATCCGGACATGAAGAAGAACATCCTCGCCATCGTCTGCGCCAGCCTGGACGGGATGAAGATGGAGCGCAACATGTTTGAGCTGTATGGGGCCGATTTTATGGTGACGGAAAACTTTCGCACCATGCTTATCGAGATCAACACCAGCCCCGATCTGTCCTCGTCCACCGACGTAACGTCCGTCATTTGTCCGGCCGTGCTAGAAGATCTTGTAAAAGTTGTAATCGACAA ]
[+] EMBL BX624651 [ ACCGGAACTGCTACCTTAGGTTTAGCTCGCGCCAGTTCAATCTGGACGATTTTAGCGAATCGATCCATCTGACGAACTACTCCATCCAGAAGAACTACGCGAAGGAGGTGCGCGAGGGTGCGGATGCACTGCCCGCGAGCAACATGTGGTCACTGAAGCGCTTCCAGGAGCATCTGCAATCGCTCGACAAGGGTTTCTACTGGGAGCGGAAGATCTATCCGGACATGAAGAAGAACATCCTCGCCATCGTCTGCGCCAGCCTGGACGGGATGAAGATGGAGCGCAACATGTTTGAGCTGTATGGGGCCGATTTTATGGTGACGGAAAACTTTCGCACCATGCTTATCGAGATCAACACCAGCCCCGATCTGTCCTCGTCCACCGACGTAACGTCCGTCATTTGTCCGGCCGTGCTAGAAGATCTTGTAAAAGTGGTAATCGACAACACGAAGGACAAACGAGCTGGAACGGGACAATTCGAACTGATTCATTCACTAGAGATACCGCGTGTGGCACCGTACGGCTACGGACTGACCGTCGACGGACGTTCGATGCAATCGAAACATCGCTCCAAAAGTCCACTGTCCCCGATCAACACGTCCACAGGACCAACGGTCGCCTCTACCGCCACATCCACACCGAAGCGAAGCACAGCAGCGGCAGGAACGACCGTAGCAACAACAGTCGCAACAGGGGTAATAATATCGACCGGAGCAAATGGTGGGAATGCGAAACATTCGCGCTACGCCGCCAGTAGCTGAATCTTCCAGCAGAGGCAGCAAAACGTCGCTTACGAGCGTCATTTTAGACCGGNCGCGTACGACGCTGA]
consensusID : consensus_4139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[CCAGTGATGTATGGGACAGTGATCCCGGTGTTGATCTAGCGGACATAACGCTAGAGCTGGGCGAGATCGATTATGGCCGGCAGCTCGACCAGCGGTTTGAACAGGCACCGGTACAGCTCACTAGACGATTTCTCAAAGGATTACCTGCGCTAGAGCCACCACCTTCCAATGCACACAAACGTCACCAATGCCCAGGTCCGGCTGGTGCTGCTCCCGGTGATGATGATCGTCCCCTATCGCCACTCTCGCGACCATTTCCCCAGCCAAAGGCTAGCCAGCATGTGCACACCTTCCCGCGCATGGCGCCACGGTTGCAGCCCCCCGACGACGACGAAGACGCGAACCGTACGCCAAAGCACAAGTTTTTCCGCAACTATAGCTTCGGCAGGAACGACCGTAGCAACAACAGTCGCAACAGGGGTAATAATATCGACCGGAGCAAATGGTGGGAATGCGAAACATTCGCGCTACGCCGCCAGTAGCTCGGAATCTTCCAGCAGAGGCAGCAAAACGTCGCTTACGAGCGTCATTTTAGACCGGCCGCGTACGACGCTGAAGTAAGCGGCCCTGTGCCTGTCCCGGTGGTCGGGGACCTCTTCTTTTTGGGGCCCACCACAGTTGTTCATAGCCCTAGATTTGCTAGCCGAATTAGTTCATGG]
[+] EMBL BX624079 [CCAGTGATGTATGGGACAGTGATCCCGGTGTTGATCTAGCGGACATAACGCTAGAGCTGGGCGAGATCGATTATGGCCGGCAGCTCGACCAGCGGTTTGAACAGGCACCGGTACAGCTCACTAGACGATTTCTCAAAGGATTACCTGCGCTAGAGCCACCACCTTCCAATGCACACAAACGTCACCAATGCCCAGGTCCGGCTGGTGCTGCTCCCGGTGATGATGATCGTCCCCTATCGCCACTCTCGCGACCATTTCCCCAGCCAAAGGCTAGCCAGCATGTGCACACCTTCCCGCGCATGGCGCCACGGTTGCAGCCCCCCGACGACGACGAAGACGCGAACCGTACGCCAAAGCACAAGTTTTTCCGCAACTATAGCTTCGGCAGGAACGACCGTAGCAACAACAGTCGCAACAGGGGTAATAATATCGACCGGAGCAAATGGTGGGAATGCGAAACATTCGCGCTACGCCGCCAGTAGCTCGGAATCTTCCAGCAGAGGCAGCAAAACGTCGCTTACGAGCGTCATTTTAGACCGGCCGCGTACGACGCTGAAGTAAGCGGCCCTGTGCCTGTCCCGGTGGTCGGGGACCTCTTCTTTTTGGGGCCCACCACAGTTGTTCATAGCCCTAGATTTGCTAGCCGAATTAGTTCATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4139#0 CCGCGGTTATTCATCAGGGCATTATTCGTACTTCGTGCTTCTTCCCCCCTTGTGTGCAAA 60
consensus_4139#1 ------------------------------------------------------------
consensus_4139#0 CGCTTTCGACACTTTGAATGATTCTTCTTTTCAATAACTAGGCCATTTATGGATTGGTAT 120
consensus_4139#1 ------------------------------------------------------------
consensus_4139#0 TCGTGGCGTGACACCACCGCAAGCATTCCGGCGTGCAAGCAGGTCAGGGATTGTGGTAAA 180
consensus_4139#1 ------------------------------------------------------------
consensus_4139#0 CGCCCGCTGTTGATACACTGCACCAAGTTCGACATCCGCCAGTACTTTCTCATCACCTAC 240
consensus_4139#1 ------------------------------------------------------------
consensus_4139#0 ACGAACAACGTGCTGAAGGTGTGGATGTACCGGAACTGCTACCTAAGGTTTAGCTCGCGC 300
consensus_4139#1 ------------------------------------------------------------
consensus_4139#0 CAGTTCAATCTGGACGATTTTAGCGAATCGATCCATCTGACGAACTACTCCATCCAGAAG 360
consensus_4139#1 ------------------------------------------------------------
consensus_4139#0 AACTACGCGAAGGAGGTGCGCGAGGGTGCGGATGCACTGCCCGCGAGCAACATGTGGTCA 420
consensus_4139#1 ------------------------------------------------------------
consensus_4139#0 CTGAAGCGCTTCCAGGAGCATCTGCAATCGCTCGACAAGGGTTTCTACTGGGAGCGCAAG 480
consensus_4139#1 ------------------------------------------------------------
consensus_4139#0 ATCTATCCGGACATGAAGAAGAACATCCTCGCCATCGTCTGCGCCAGCCTGGACGGGATG 540
consensus_4139#1 ----------------------------CCAGTGATGTATGGGACAGTGATCCCGGTGTT 32
* ** ** * *** *** *
consensus_4139#0 AAGATGGAGCGCAACATGTTTGAGCTGTATGGGGCCGATTTTATGGTGACGGAAAACTTT 600
consensus_4139#1 GATCTAGCGGACATAACGCTAGAGCTGGGCGAGATCGATT-----ATGGCCGGCAGCTCG 87
* * * * ** * * * ****** * * ***** ** * * * **
consensus_4139#0 CGCACCATGCTTATCGAGATCAACACCAGCCCCGATCTGTCCTCGTCCACCGACGTAACG 660
consensus_4139#1 ACCAGCG-----GTTTGAACAGGCACCGGTACAGCTCACTAGACGATTTCTCAAAGGATT 142
** * * * **** * * * ** * ** * * *
consensus_4139#0 TCCGTCATTTGTCCGGCCGTGCTAGAAGATCTTGTAAAAGTTGTAATCGACAACACGAAG 720
consensus_4139#1 ACCTGCGCTAGAGCCACCACCTTCCAATG-CACACAAACGTCAC------CAATGCCCAG 195
** * * * * ** * ** * *** ** *** * **
consensus_4139#0 GACAAACGAGCTGGAACGGGACAATTCGAACTGATTCATTCACTAGAGATAC-CGCGTGT 779
consensus_4139#1 GTC----CGGCTGGTGCTGCTCCCGGTGATGATGATCGTCCCCTATCGCCACTCTCGCGA 251
* * ***** * * * ** ** * * *** * ** * ** *
consensus_4139#0 GGCACCGTACGGCTACGGACTGACCGTCGACGGACGTTCGATGCAATCGAAACATCGCTC 839
consensus_4139#1 CCATTTCCCCAGCCAAAGGCTAGCCAGC-----ATGTGCACACCTTCCCGCGCATGGCGC 306
* ** * * ** ** * * ** * * * *** ** *
consensus_4139#0 CAAAAGTCCACTGTCCCCGATCAACACGTCCACAGGACCAACGGTCGCCTCTACCGCCAC 899
consensus_4139#1 CACGGTTGCAGC-CCCCCGACGACGACGAAGACGCGAAC--CGTACGCC---AAAGCACA 360
** * ** ****** * *** ** ** * ** **** * **
consensus_4139#0 ATCCACACCGAAGCGAAGCACAGCAGCGGCAGGAACGACCGTAGCAACAACAGTCGCAAC 959
consensus_4139#1 AGTTTTTCCGCAAC----TATAGCTTCGGCAGGAACGACCGTAGCAACAACAGTCGCAAC 416
* *** * * * *** **********************************
consensus_4139#0 AGGGGTAATAATATCGACCGGAGCAAATGGTGGGAATGCGAAACATTCGCGCTACGCCGC 1019
consensus_4139#1 AGGGGTAATAATATCGACCGGAGCAAATGGTGGGAATGCGAAACATTCGCGCTACGCCGC 476
************************************************************
consensus_4139#0 CAGTAGCT--GAATCTTCCAGCAGAGGCAGCAAAACGTCGCTTACGAGCGTCATTTTAGA 1077
consensus_4139#1 CAGTAGCTCGGAATCTTCCAGCAGAGGCAGCAAAACGTCGCTTACGAGCGTCATTTTAGA 536
******** **************************************************
consensus_4139#0 CCGGNCGCGTACGACGCTGA---------------------------------------- 1097
consensus_4139#1 CCGGCCGCGTACGACGCTGAAGTAAGCGGCCCTGTGCCTGTCCCGGTGGTCGGGGACCTC 596
**** ***************
consensus_4139#0 ------------------------------------------------------------
consensus_4139#1 TTCTTTTTGGGGCCCACCACAGTTGTTCATAGCCCTAGATTTGCTAGCCGAATTAGTTCA 656
consensus_4139#0 ---
consensus_4139#1 TGG 659
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||