These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CCGGTCGCTTTAAGTGGACGCAGTCGTGTTTGGTCCGCGATGAGGATTTCGTTGTTCAGTTTTGTTGGCTTCTTGCTGTCGCTGGGAGTTACTGTGAATGGGGCCAATATACTCTGCCTGATGGGAGTTGCCAGCCCAAGTCATCATATCTGGAATCGAGCTATTATGGACGGGCTAGCCCGCGCTGGACACAATCTAACCATCCTGTCGGCTGATGTGGAAAAGAACCAACCGAATAACGTCCACTACGTGCATCTGGAGGAAATCTATCCCACGCTGTACAGCGGTCCCGACTCGATCGATCTGATGGAAATGGCGAACGAAAATGTGTTCAAAAGTGTCGTCTCCTTCTATCGTGACTTTGTAGTGCATGAATGTGCTGGAACGCTGAAATCGAAAGGTTTACAGCAGGTGATGGACTATCCGGACGATTTTCGGTTCGATCTTGTGCTGCACGACTTCACCTGTGGACCGTGTTTGCTTGGTTTGCTGCACAAGTTCAACTATCCGCCGTTGGTCAGCGTGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTTCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTTAACGGATGTGGTCTACCGAAACTATGTTTC] [+] EMBL BM579004 [CCGGTCGCTTTAAGTGGACGCAGTCGTGTTTGGTCCGCGATGAGGATTTCGTTGTTCAGTTTTGTTGGCTTCTTGCTGTCGCTGGGAGTTACTGTGAATGGGGCCAATATACTCTGCCTGATGGGAGTTGCCAGCCCAAGTCATCATATCTGGAATCGAGCTATTATGGACGGGCTAGCCCGCGCTGGACACAATCTAACCATCCTGTCGGCTGATGTGGAAAAGAACCAACCGAATAACGTCCACTACGTGCATCTGGAGGAAATCTATCCCACGCTGTACAGCGGTCCCGACTCGATCGATCTGATGGAAATGGCGAACGAAAATGTGTTCAAAAGTGTCGTCTCCTTCTATCGTGACTTTGTAGTGCATGAATGTGCTGGAACGCTGAAATCGAAAGGTTTACAGCAGGTGATGGACTATCCGGACGATTTTCGGTTCGATCTTGTGCTGCACGACTTCACCTGTGGACCGTGTTTGCTTGGTTTGCTGCACAAGTTCAACTATCCGCCGTTGGTCAGCGTGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTTCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTTAACGGATGTGGTCTACCGAAACTATGTTTC] consensusID : consensus_4140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTGAATGTGCTGGAACGCTGAAATCGAAAGGTTTGCAGCGAGTGATGGACTACCCGGACGATTTTCGGTTCGATCTGGTACTACACGACTTCACCTGTGGACCGTGTTTGCTCGGTTTGCTGCACAAGTTCAACTATCCGCCGCTGGTCAGCGTGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCGAATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCTAAGCCAGCGAACGAAGATGATGCTGGTGAATGCACACTACTCGATCGATTTTCCTGAGGCGGCTCCACCTAACCTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGCTCCACTGCCCGCCGATTTGGAGCAGTTCGTTAACGCAAGCCGCAAAGGAGCCGTGCTGTTCTCGCTCGGTACGAACGTGCGTAGTGATCAGTTGGACAGTGGCCGGCAGCGTATGATAGTGGGAAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGT] [+] EMBL BM578879 [CCGCGGACGCGTGGGCGGACGCGTGGGTGAATGTGCTGGAACGCTGAAATCGAAAGGTTTGCAGCGAGTGATGGACTACCCGGACGATTTTCGGTTCGATCTGGTACTACACGACTTCACCTGTGGACCGTGTTTGCTCGGTTTGCTGCACAAGTTCAACTATCCGCCGCTGGTCAGCGTGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCGAATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCTAAGCCAGCGAACGAAGATGATGCTGGTGAATGCACACTACTCGATCGATTTTCCTGAGGCGGCTCCACCTAACCTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGCTCCACTGCCCGCCGATTTGGAGCAGTTCGTTAACGCAAGCCGCAAAGGAGCCGTGCTGTTCTCGCTCGGTACGAACGTGCGTAGTGATCAGTTGGACAGTGGCCGGCAGCGTATGATAGTGGGAAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGT] consensusID : consensus_4140#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [AAGAATCGCCACGAGGNGCNAACGTTTATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCGAATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCTAAGCCAGCGAACGAAGATGGATGCTGGGTCAATGCACACGTACTCGATCGAGTTTTCCTGAGGCGGCTCCACCTAACCTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGCGTCCACTGCCCGCCGATTTGGAGCAGTTCGTTAACGCAAGCCGCGAAAGGAGCCGTGCTGTTCTCGCTCGGTACGAACGTGCGTAGTGAGTCAGTTGGACAGTGGCCGGCAGGCGTATGATAGTGGAAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGTGGAAGTTTGAAACGGAGCTACGGCATTCCGGTGCCCAAAAAATGTGATCGTGCGCCCGTGGATGCACAGAATGATCTGCGTGGCGGCATNCA] [+] EMBL BX469275 [AAGAATCGCCACGAGGNGCNAACGTTTATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACTCGTACGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCGAATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCTAAGCCAGCGAACGAAGATGGATGCTGGGTCAATGCACACGTACTCGATCGAGTTTTCCTGAGGCGGCTCCACCTAACCTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGCGTCCACTGCCCGCCGATTTGGAGCAGTTCGTTAACGCAAGCCGCGAAAGGAGCCGTGCTGTTCTCGCTCGGTACGAACGTGCGTAGTGAGTCAGTTGGACAGTGGCCGGCAGGCGTATGATAGTGGAAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGTGGAAGTTTGAAACGGAGCTACGGCATTCCGGTGCCCAAAAAATGTGATCGTGCGCCCGTGGATGCACAGAATGATCTGCGTGGCGGCATNCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4140#1 CCGCGGACGCGTGGGCGGACGCGTGGGTGAATGTGCTGGAACGCTGAAATCGAAAGGTTT 60 consensus_4140#2 ------------------------------------------------------------ consensus_4140#0 ------------------------------------------------------------ consensus_4140#1 GCAGCGAGTGATGGACTACCCGGACGATTTTCGGTTCGATCTGGTACTACACGACTTCAC 120 consensus_4140#2 ------------------------------------------------------------ consensus_4140#0 --------------------------CCGGTCGCTTTAAGTGGACGCAGTCGTGTTTGGT 34 consensus_4140#1 CTGTGGACCGTGTTTGCTCGGTTTGCTGCACAAGTTCAACTA-TCCGCCGCTGGTCAGCG 179 consensus_4140#2 --------------------------------------AAGA-ATCGCCACGAG---GNG 18 consensus_4140#0 CCGCGATGAGGATTTCGTTGTTCAGTTTTGTTGGCTTCTTGCTGTCGCTGGGAGTTACTG 94 *** * * consensus_4140#1 TGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACT 239 consensus_4140#2 CNAACG---TTTATAATCCACCCTACTCGACGGAGGTGATCGGGGGACATAAGTTTTACT 75 consensus_4140#0 TGAATG---GGGCCAATATACTCTGCCTGATGGGAGTTGCCAGCCCAAGTCATCATATCT 151 * * *** ** ** * ** ** ** * * * * * * ** consensus_4140#1 CGTA-CGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTT 298 consensus_4140#2 CGTA-CGTCCCGTTCTACTCGCTCAGCTACGGCACGGACATGAATTTCTTCCAGCGCGTT 134 consensus_4140#0 GGAATCGAGCTATTATGGACGGGCTAGCCCGCGCTGGACACAA--TCTAACCATCCTGTC 209 * * ** * ** * ** * ** ***** * * *** * ** consensus_4140#1 CAC-AACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCG 357 consensus_4140#2 CAC-AACACGCTGCTTTGTCTAACGGATGTGGTCTACCGAAACTATGTTTCCAATCCTCG 193 consensus_4140#0 GGCTGATGTGGAAAAGAACCAACCGAATAACGTCCACTA----CGTGCATCTGGAG--GA 263 * * * * * ** ** *** ** ** ** consensus_4140#1 AATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCT 417 consensus_4140#2 AATCGATGCGATGATGCGAGAGTACTTCCGCTACGATGATCTTCCCTACGCTCCCGAGCT 253 consensus_4140#0 AATCTATCCCACGCTGT-ACAGCGGTCCCGACTCGATCGATCTGATGGAAATGGCGAACG 322 **** ** * * * ** * ** * *** **** * * *** * consensus_4140#1 AAGCCAGCGAACGAAGATG-ATGCTGG-TGAATGCACAC-TACTCGATCGA--TTTTCCT 472 consensus_4140#2 AAGCCAGCGAACGAAGATGGATGCTGGGTCAATGCACACGTACTCGATCGAG-TTTTCCT 312 consensus_4140#0 AAAAT-GTGTTCAAAAGTGTCGTCTCCTTCTATCGTGACTTTGTAGTGCATGAATGTGCT 381 ** * * * ** ** ** * ** ** * * * * * * ** consensus_4140#1 GAGGCGGCTCCACCTAAC--CTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGC-- 528 consensus_4140#2 GAGGCGGCTCCACCTAAC--CTAATCCCAGTCGGTGGACTGCAGATACGTGAACCTGCG- 369 consensus_4140#0 GGAACGCTGAAATCGAAAGGTTTACAGCAGGTGATGGACTATCCGGACGATTTTCGGTTC 441 * ** * * ** * * *** * ****** *** * * consensus_4140#1 --TCCACTGCCCGCCGATTTG----GAGCAGTTCGTTAACGCAAGCCGC-AAAGGAGCCG 581 consensus_4140#2 --TCCACTGCCCGCCGATTTG----GAGCAGTTCGTTAACGCAAGCCGCGAAAGGAGCCG 423 consensus_4140#0 GATCTTGTGCTGCACGACTTCACCTGTGGACCGTGTTTGCTTGGTTTGCTGCACAAGTTC 501 ** *** *** ** * * * *** * ** * ** consensus_4140#1 TGCTGTTC----TCGCTCGGTACGAACGTGCGTAGTGA-TCAGTTGGACAGTGGCCGGCA 636 consensus_4140#2 TGCTGTTC----TCGCTCGGTACGAACGTGCGTAGTGAGTCAGTTGGACAGTGGCCGGCA 479 consensus_4140#0 AACTATCCGCCGTTGGTCAGCGTGACCGCGTTTAATAATCCACCCTACTCGACGGAGGTG 561 ** * * * * ** * ** ** * ** * * ** * * ** consensus_4140#1 G-CGTATGATAGTGGGAAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGT-------- 687 consensus_4140#2 GGCGTATGATAGTGG-AAGCGCTCCGTCAGCTACCGGACTATCACTTTCTGTGGAAGTTT 538 consensus_4140#0 ATCGGGGGACATAAG--TTTTACTCGTACGTT-CCGTTCTACT-CGCTCAGCTACGGCAC 617 ** ** * * *** * * *** *** * ** * consensus_4140#1 ------------------------------------------------------------ consensus_4140#2 GAAACGGAGCTACGGCATTCCGGTGCCCAAAAAATGTGATCGTGCGCCCGTGGATGCACA 598 consensus_4140#0 GGACATGAATTTCTTCCAGCGCGTTCACAACACGCTGCTTTGTCTTAACGGATGTGGTCT 677 consensus_4140#1 ------------------------ consensus_4140#2 GAATGATCTGCGTGGCGGCATNCA 622 consensus_4140#0 ACCGAAACTATGTTTC-------- 693 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||