These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 870 fasta sequence [AGATCCCCGAGGTTANTAAACACCCAACAATATCCACCGAAAGCGCTGAAAATCTACAGCAAAGAACGCGTGGGAAAGGAAGATGTTTGATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCTTAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCACGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGTCTGTGGGTGATTTTTTGAGCTCATTTCAAAATCAAAATAATCTACACATTGGATTAACATCATCCAATGGAACGATCTATGAGTTCGACGTTCAAAGGTTTAGTGAAAACACCATTCAATAATAGGACCGTGGCCTTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTACCCGAATCGTGGTACGACCGATGGGATGAGGTG-TGGAACAGATTTCAACTGATCAGTCATGGAGCGANAGAGATGTACGAGAAAGACTCCCACAACTGCTACTCATTTGTATTAGGC-TTCTGAAAGCACTGGAGTATGGAGAA-TTTCGGCGCTTTGTCATGACAAATTATTGTTCAGTGAGAAGATCGTGGCTTCCAAGACACAAAATGCTGCTAAGTACATCACCATTCATCGCAAGCTTCAAGGATGCAATTATTTCACCGAAGAACAGGAATGAGAAACTATGGACTGATAGTAGTAACAAGAAACTGACTGTGATCCGTAAGCCGTATTTCTATGTGGAGCTATCCGAAGCTTTGTATTATCTTTTGTAATAAAAGTGATTTGACTGTAACCAGATAAAATATGAAAAAAAAAAAAA] [+] EMBL AL934773 [AGATCCCCGAGGTTANTAAACACCCAACAATATCCACCGAAAGCGCTGAAAATCTACAGCAAAGAACGCGTGGGAAAGGAAGATGTTTGATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCTTAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCACGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGTCTGTGGGTGATTTTTTGAGCTCATTTCAAAATCAAAATAATCTACACATTGGATTAACATCATCCAATGGAACGATCTATGAGTTCGACGTTCAAAGGTTTAGTGAAAACACCATTCAATAATAGGACCGTGGCCTTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTACCCGAATCGTGGTACGACCGATGGGATGAGGTG TGGAACAGATTTCAACTGATCAGTCATGGAGCGANAGAGATGTACGAGAAAGACTCCCACAACTGCTACTCATTTGTATTAGGC TTCTGAAAGCACTGGAGTATGGAGAA TTTCGGC ] [-] EMBL CNS096UU [ GACGTT AAAGGTTTAGTGAAAACACCATTCAATAATAGGACCGTGGCCCTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTACCCCAATCGTGGTACGACCAATGGGATGAGGTGTTGGAACAGATTTCAACTGATCAGTCGTGGAGCGA AGAGATGTACGAAAAAGACTCCCACCACTGCTACTCATTTGTATTAGGCTTTCTGAAAGCACTGGAGTATGGAGAATTTTCGGCGCTTTGTCATGACAAATTATTGTTCAGTGAGAAGATCGTGGCTTCCAAGACACAAAATGCTGCTAAGTACATCACCATTCATCGCAAGCTTCAAGGATGCAATTATTTCACCGAAGAACAGGAATGAGAAACTATGGACTGATAGTAGTAACAAGAAACTGACTGTGATCCGTAAGCCGTATTTCTATGTGGAGCTATCCGAAGCTTTGTATTATCTTTTGTAATAAAAGTGATTTGACTGTAACCAGATAAAATATGAAAAAAAAAAAAA] consensusID : consensus_4142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [TTCGCGCTGTGATTACATGCTCTTGTGCATTTTCCGTGCAAGCATTCTAAACACCCAACGATATCCATCCAAAGCGTTGAAAATCTACAGCAAATAACGAAAGGAAGATGTTTGATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCTTAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCACGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGTCTGTGGGAGATTTTTTGAGCTCTTTTCAAAATCAAAATAATCTACACATTGGATTAACATCGTCCAATGGAACGATCTATGAGTTCGACGTTAAAGGTTTAGTGAAAACACCATTCAATAATAGGACCGTGGCCCTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTACCCGAATCGTGGTACGACCGATGGGATGAGGTGTTGGAACAGATTTAAAATGATCAGTCGTGGAGCGAAGAGATGTACGAAAAAGACTCCCACAACTGCTACTCATTTGTATTAGGCTT] [+] EMBL CNS096UT [TTCGCGCTGTGATTACATGCTCTTGTGCATTTTCCGTGCAAGCATTCTAAACACCCAACGATATCCATCCAAAGCGTTGAAAATCTACAGCAAATAACGAAAGGAAGATGTTTGATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCTTAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCACGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGTCTGTGGGAGATTTTTTGAGCTCTTTTCAAAATCAAAATAATCTACACATTGGATTAACATCGTCCAATGGAACGATCTATGAGTTCGACGTTAAAGGTTTAGTGAAAACACCATTCAATAATAGGACCGTGGCCCTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTACCCGAATCGTGGTACGACCGATGGGATGAGGTGTTGGAACAGATTTAAAATGATCAGTCGTGGAGCGAAGAGATGTACGAAAAAGACTCCCACAACTGCTACTCATTTGTATTAGGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4142#0 ----------------------------AGATCCC---CGAGGTTANTAAACACCCAACA 29 consensus_4142#1 TTCGCGCTGTGATTACATGCTCTTGTGCATTTTCCGTGCAAGCATTCTAAACACCCAACG 60 * * ** * ** * ************ consensus_4142#0 ATATCCACCGAAAGCGCTGAAAATCTACAGCAAAGAACGCGTGGGAAAGGAAGATGTTTG 89 consensus_4142#1 ATATCCATCCAAAGCGTTGAAAATCTACAGCAAATAACG------AAAGGAAGATGTTTG 114 ******* * ****** ***************** **** *************** consensus_4142#0 ATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCT 149 consensus_4142#1 ATAGCCGAGACTTAATGTGCTTGCGACACTGCAATAAAACCATTTTTTCATACGACGTCT 174 ************************************************************ consensus_4142#0 TAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCA 209 consensus_4142#1 TAGTCCAATGTCCCATTTGCTGCAAATCTTTGGGCGAAAGTCTAGACGAAACACCATTCA 234 ************************************************************ consensus_4142#0 CGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGT 269 consensus_4142#1 CGTTGCCGTGTCCATTTGTCCGGGCATATCAACATCCCTGTTCGATTGTTCTTCGACCGT 294 ************************************************************ consensus_4142#0 CTGTGGGTGATTTTTTGAGCTCATTTCAAAATCAAAATAATCTACACATTGGATTAACAT 329 consensus_4142#1 CTGTGGGAGATTTTTTGAGCTCTTTTCAAAATCAAAATAATCTACACATTGGATTAACAT 354 ******* ************** ************************************* consensus_4142#0 CATCCAATGGAACGATCTATGAGTTCGACGTTCAAAGGTTTAGTGAAAACACCATTCAAT 389 consensus_4142#1 CGTCCAATGGAACGATCTATGAGTTCGACGTT-AAAGGTTTAGTGAAAACACCATTCAAT 413 * ****************************** *************************** consensus_4142#0 AATAGGACCGTGGCCTTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTA 449 consensus_4142#1 AATAGGACCGTGGCCCTGAAAGACGAAAGCTGGGACCAATGTCTTGTAATTGCTCAAGTA 473 *************** ******************************************** consensus_4142#0 CCCGAATCGTGGTACGACCGATGGGATGAGGTGT-GGAACAGATTTCAACTGATCAGTCA 508 consensus_4142#1 CCCGAATCGTGGTACGACCGATGGGATGAGGTGTTGGAACAGATTTAAAATGATCAGTCG 533 ********************************** *********** ** ********* consensus_4142#0 TGGAGCGANAGAGATGTACGAGAAAGACTCCCACAACTGCTACTCATTTGTATTAGGCTT 568 consensus_4142#1 TGGAGCGAA-GAGATGTACGAAAAAGACTCCCACAACTGCTACTCATTTGTATTAGGCTT 592 ******** *********** ************************************** consensus_4142#0 CTGAAAGCACTGGAGTATGGAGAATTTCGGCGCTTTGTCATGACAAATTATTGTTCAGTG 628 consensus_4142#1 ------------------------------------------------------------ consensus_4142#0 AGAAGATCGTGGCTTCCAAGACACAAAATGCTGCTAAGTACATCACCATTCATCGCAAGC 688 consensus_4142#1 ------------------------------------------------------------ consensus_4142#0 TTCAAGGATGCAATTATTTCACCGAAGAACAGGAATGAGAAACTATGGACTGATAGTAGT 748 consensus_4142#1 ------------------------------------------------------------ consensus_4142#0 AACAAGAAACTGACTGTGATCCGTAAGCCGTATTTCTATGTGGAGCTATCCGAAGCTTTG 808 consensus_4142#1 ------------------------------------------------------------ consensus_4142#0 TATTATCTTTTGTAATAAAAGTGATTTGACTGTAACCAGATAAAATATGAAAAAAAAAAA 868 consensus_4142#1 ------------------------------------------------------------ consensus_4142#0 AA 870 consensus_4142#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||