cluster # 415

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Anopheles gambiae
cluster # 415 cluster # 415 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_415#0 length = 396 sequences # 1

consensus_415#1 length = 372 sequences # 1

consensusID : consensus_415#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [CCGCCCACGACGTCCGCCCACGCGTCCGCCCACGCGTCCGGCCGGAATGGCTCGTCGTTATCGGCGTGTGCACGCATCTGGGCTGTGTCCCGATCGCCAACGCCGGTGACTTCGGTGGCTACTACTGTCCGTGCCACGGTTCCCACTACGACGCGTCCGGACGCATCCGCAAGGGTCCGGCTCCGCTGAACCTGGAGGTGCCGCACTACAAATTCCCGGAGGATGGTCTCCTTATTGTCGGTTAGAGACCTTTGGTACCCCCCTCCCCGTTCCGTTCCACCGTACAACGGGACACCAACAATCCCGCGCTCAGCTAAAGTAGTGAATAATGTATCAATCGCAGCAAGCCGCACGCTGAATGATTATCATCTTTTGTTCGGCTAAACCAATTTCGAT]

[+] EMBL BM599925             [CCGCCCACGACGTCCGCCCACGCGTCCGCCCACGCGTCCGGCCGGAATGGCTCGTCGTTATCGGCGTGTGCACGCATCTGGGCTGTGTCCCGATCGCCAACGCCGGTGACTTCGGTGGCTACTACTGTCCGTGCCACGGTTCCCACTACGACGCGTCCGGACGCATCCGCAAGGGTCCGGCTCCGCTGAACCTGGAGGTGCCGCACTACAAATTCCCGGAGGATGGTCTCCTTATTGTCGGTTAGAGACCTTTGGTACCCCCCTCCCCGTTCCGTTCCACCGTACAACGGGACACCAACAATCCCGCGCTCAGCTAAAGTAGTGAATAATGTATCAATCGCAGCAAGCCGCACGCTGAATGATTATCATCTTTTGTTCGGCTAAACCAATTTCGAT]




>consensus_415#0
CCGCCCACGACGTCCGCCCACGCGTCCGCCCACGCGTCCGGCCGGAATGGCTCGTCGTTA
TCGGCGTGTGCACGCATCTGGGCTGTGTCCCGATCGCCAACGCCGGTGACTTCGGTGGCT
ACTACTGTCCGTGCCACGGTTCCCACTACGACGCGTCCGGACGCATCCGCAAGGGTCCGG
CTCCGCTGAACCTGGAGGTGCCGCACTACAAATTCCCGGAGGATGGTCTCCTTATTGTCG
GTTAGAGACCTTTGGTACCCCCCTCCCCGTTCCGTTCCACCGTACAACGGGACACCAACA
ATCCCGCGCTCAGCTAAAGTAGTGAATAATGTATCAATCGCAGCAAGCCGCACGCTGAAT
GATTATCATCTTTTGTTCGGCTAAACCAATTTCGAT

consensusID : consensus_415#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [CCGGCAGCAAGCCGCACGCTGAATGATTATCATCTTTTGTTCGGCTAAAGTAGTGAAGAATGTATCAATCGCAGCAAGCCGCACGCTGAATGATTATCATCTTTTGTTCGGCTAAACCAATTTCGACGATGCCTCCTCCTCCACCTCCGGATTGTGTCACTATGCGCGTGTGTAAGTATTTGCATATTCAATCCGACTATCCGACCAATCCAACATAAAAAAAAAAACCCAGATTGGCAGGAGGCAACCCCCCAACCAACAGCAGGAGGCAACAGCAAAGCAACCAAAACCCGAACCTACCGCTAACTAGTAGAACAATTACAGCACCAGACTGGGTAATAAATTGATTGGTAAAACGTTACTATAGTTACG]

[+] EMBL BM606171             [CCGGCAGCAAGCCGCACGCTGAATGATTATCATCTTTTGTTCGGCTAAAGTAGTGAAGAATGTATCAATCGCAGCAAGCCGCACGCTGAATGATTATCATCTTTTGTTCGGCTAAACCAATTTCGACGATGCCTCCTCCTCCACCTCCGGATTGTGTCACTATGCGCGTGTGTAAGTATTTGCATATTCAATCCGACTATCCGACCAATCCAACATAAAAAAAAAAACCCAGATTGGCAGGAGGCAACCCCCCAACCAACAGCAGGAGGCAACAGCAAAGCAACCAAAACCCGAACCTACCGCTAACTAGTAGAACAATTACAGCACCAGACTGGGTAATAAATTGATTGGTAAAACGTTACTATAGTTACG]




>consensus_415#1
CCGGCAGCAAGCCGCACGCTGAATGATTATCATCTTTTGTTCGGCTAAAGTAGTGAAGAA
TGTATCAATCGCAGCAAGCCGCACGCTGAATGATTATCATCTTTTGTTCGGCTAAACCAA
TTTCGACGATGCCTCCTCCTCCACCTCCGGATTGTGTCACTATGCGCGTGTGTAAGTATT
TGCATATTCAATCCGACTATCCGACCAATCCAACATAAAAAAAAAAACCCAGATTGGCAG
GAGGCAACCCCCCAACCAACAGCAGGAGGCAACAGCAAAGCAACCAAAACCCGAACCTAC
CGCTAACTAGTAGAACAATTACAGCACCAGACTGGGTAATAAATTGATTGGTAAAACGTT
ACTATAGTTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_415#0      CCGCCCACGACGTCCGCCCACGCGTCCGCCCACGCGTCCGGC-CGGAATGGCTCGTCGTT 59
consensus_415#1      -------------------------CCGGCAGCAAGCCGCACGCTGAATGATT-ATCATC 34
                                              *** *  *  * *   * * *****  *  ** * 

consensus_415#0      ATCGGCGTGTGCACGCATCTGGGCTGTGTCCCGATCGCCAACGCCGGTGACTTCGGTGGC 119
consensus_415#1      TTTTGTTCGGCTAAAGTAGTGAAGAATGTATCAATCGCAGCAAGCCGCACGCTGAATGAT 94
                      *  *   *   *      **     ***  * *****      * *     *   **  

consensus_415#0      TACTACTGTCCGTGCCACGGTTCCCACTACGACGCGTCCGGACGCATCCGCAAGGGTCCG 179
consensus_415#1      TATCATCTTTTGTTCGGCTAAACCAATTTCGACG-ATGCCTCCTCCTCCACCTCCGGATT 153
                     **  *   *  ** *  *    ** * * *****  * *   * * *** *    *    

consensus_415#0      GCTCCGCTGAACCTGGAGGTGCCGCACTACAAATTC--CCGGAGGAT--GGTCTCCTTAT 235
consensus_415#1      GTGTCACTATGCGCGTGTGTAAGTATTTGCATATTCAATCCGACTATCCGACCAATCCAA 213
                     *   * **   *  *   **       * ** ****   * **  **  *  *     * 

consensus_415#0      TGTCGGTTAGAGACCTTTGGT--ACCCCCCTCCCCGTTCCGTTCCACCGTACAACGGGAC 293
consensus_415#1      CATAAAAAAAAAAACCCAGATTGGCAGGAGGCAACCCCCCAACCAACAGCAGGAGGCAAC 273
                       *     * * * *   * *   *      *  *   **   * ** * *  * *  **

consensus_415#0      ACCAACA-ATCCCGCGCTCAGCTAAAGTAGTGAATAATGTATCAATCGCAGCAAGCCGCA 352
consensus_415#1      AGCAAAGCAACCAAAACCCGAACCTACCGCTAACTAGTAGAACAATTACAGCAC----CA 329
                     * ***   * **    * *      *    * * ** *  * ****  *****     **

consensus_415#0      CGCTGAATGATTA-TCATCTTTTGTTCGGCTAAACCAATTTCGAT 396
consensus_415#1      GACTGGGTAATAAATTGATTGGTAAAACGTTACTATAGTTACG-- 372
                       ***  * ** * *    *  *     * **    * ** **