These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence [ATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGGTGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGCGGTGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGTGCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCCAAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGATCGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAGGGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATGCGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGACTCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTTCTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGGATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAGCATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGTAAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AF437888 [ATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGGTGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGCGGTGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGTGCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCCAAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGATCGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAGGGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATGCGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGACTCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTTCTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGGATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAGCATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGTAAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 807 fasta sequence [AATAAAACATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGGTGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGTGGTGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGTGCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCCAAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGATCGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAGGGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATGCGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGACTCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTTCTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGGATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAGCATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGTAAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTG] [+] EMBL CNS08PQX [AATAAAACATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGGTGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGTGGTGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGTGCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCCAAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGATCGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAGGGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATGCGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGACTCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTTCTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGGATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAGCATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGTAAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCTG] [-] EMBL CNS08PQY [ GGTGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGTGGTGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGTGCGATGACGCGAAAACAACTGATCAATTCGATGGACTTGATGCGTTCGGCGTGCGCTCCCAAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGATCGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAGGGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATGCGGGACAAGGCGAAGGAAGCGATCAACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGACTCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTTCTCTTTCCCTGATGGTGTTGGCGCGTCGATCGTTGGCAGAATGTTCGTGATCGGTCCGGGATGAAGCGATCCGGCACCGGGATTGAAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAGCATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGTAAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAATCACG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4164#0 --------ATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGG 52 consensus_4164#1 AATAAAACATTTCTGTTCGGTGTGTCGCGGTACTAACAGGAGGATGATCATCGTTGGTGG 60 **************************************************** consensus_4164#0 TGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGCGG 112 consensus_4164#1 TGGCGATCATCGCGCAACGGCTTAGCCATGGCCGCAAGCAGATCGTGCTGTTGGTGGTGG 120 ********************************************************* ** consensus_4164#0 TGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGT 172 consensus_4164#1 TGGGATTTTATATTGGGATTGGTCGCCTTCATCTTTATTCCGTTCCCTTCTGTGGAGTGT 180 ************************************************************ consensus_4164#0 GCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCC 232 consensus_4164#1 GCGATGACGCGAAAACAACTGATCAATTCGATGGACATGATGCGTTCGGCGTGCGCTCCC 240 ************************************************************ consensus_4164#0 AAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGAT 292 consensus_4164#1 AAGTTCAAAGTATCCACCGAGATGCTGGACAACTTGCGGGGCGGCATATTCGCCGAGGAT 300 ************************************************************ consensus_4164#0 CGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAG 352 consensus_4164#1 CGCGAACTCAAATGCTACACGATGTGCATTGCGCAGATGGCGGGAACGATGAACAAAAAG 360 ************************************************************ consensus_4164#0 GGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATG 412 consensus_4164#1 GGCGAAATCAACGTGCAGAAAACGCTCGCCCAGATGGACGCGATGCTACCGCCGGACATG 420 ************************************************************ consensus_4164#0 CGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGAC 472 consensus_4164#1 CGGGACAAGGCGAAGGAAGCGATCCACTCCTGTCGCGATGTGCAGGGTCGCTATAAGGAC 480 ************************************************************ consensus_4164#0 TCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTT 532 consensus_4164#1 TCGTGCGACAAAACGTTCTACTCTACCAAATGTCTTGCCGAGTACGATCGCGACGTGTTT 540 ************************************************************ consensus_4164#0 CTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGG 592 consensus_4164#1 CTCTTTCCCTGATGGTGATGGCGCGTCGATCGTTGGCAGCATGTTCGTGATCGGTCCGGG 600 ************************************************************ consensus_4164#0 ATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAG 652 consensus_4164#1 ATGAAGCGATCCGGCACCGGGATTGCAGAGACGTCAGCAGGCAGCATCAGCAGGCAGCAG 660 ************************************************************ consensus_4164#0 CATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGT 712 consensus_4164#1 CATAATCTTACAGCATAGGCAGCATAGATGGCACATCGTGGTGGTGGTGGTGTTAGCTGT 720 ************************************************************ consensus_4164#0 AAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAACAAAAAAAA 772 consensus_4164#1 AAATGGGAAAGAATGGGAAAAGAAATAAACGAACAGAAACACGAAACCAAAAAAAAAAAA 780 *************************************************** ******** consensus_4164#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 832 consensus_4164#1 AAAAAAAGGCCACATGTGCCCGGGCTG--------------------------------- 807 ******* * * consensus_4164#0 AAAAAA 838 consensus_4164#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||