These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence [CCGCGGACGCGTGGGCGCGAGTACTTGTGTGCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGTCCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATCGTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGAGCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGCTGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATACGCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGATTTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACACACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGGACGAATTGATAGGTATCTCACAAGAAATGGAGAGTTTTATTTATTTAAGTAGCTCTAGTAACCCTCCCCA] [+] EMBL BM589572 [CCGCGGACGCGTGGGCGCGAGTACTTGTGTGCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGTCCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATCGTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGAGCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGCTGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATACGCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGATTTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACACACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGGACGAATTGATAGGTATCTCACAAGAAATGGAGAGTTTTATTTATTTAAGTAGCTCTAGTAACCCTCCCCA] [+] EMBL BM630093 [ ccgGCGAGTACTTGTGTGCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGTCCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATCGTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGAGCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGCTGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATACGCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGATTTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACACACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGGACGAATTGATAGGTATCTCACAAGAAATGGAGAGTTTTATTTATTTAAGTAGC ] consensusID : consensus_4174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CCGGCAGTACAAGCGGGCCACGGTGAACATCAAGAGCGCGGCCATCGCGAGTACTTGTGTGCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGTCCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATCGTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGAGCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGCTGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATACGCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGATTTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACACACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGGACGAATTGATAGGTATCTCACAAGAA] [+] EMBL BM597093 [CCGGCAGTACAAGCGGGCCACGGTGAACATCAAGAGCGCGGCCATCGCGAGTACTTGTGTGCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGTCCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATCGTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGAGCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGCTGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATACGCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGATTTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACACACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGGACGAATTGATAGGTATCTCACAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4174#0 -----------------------------CCGCGGACGCG-TGGGCGCGAGTACTTGTGT 30 consensus_4174#1 CCGGCAGTACAAGCGGGCCACGGTGAACATCAAGAGCGCGGCCATCGCGAGTACTTGTGT 60 * * **** *************** consensus_4174#0 GCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGT 90 consensus_4174#1 GCATGTTTTGCCACCTATCGTACCACCCCTCCTTCCCGCGTACCTCCCACTGAAGGTCGT 120 ************************************************************ consensus_4174#0 CCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATC 150 consensus_4174#1 CCGTGAGGGTGTGCAACCGCGGGGGTTGGAGGTGGGGCACTAGAAAAGGGAAAGTAAATC 180 ************************************************************ consensus_4174#0 GTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGA 210 consensus_4174#1 GTTTCAAACTAGTTCGAGCTGCTACTAACACCAGCGCAGGGCAGTGTTGGGTACGCTGGA 240 ************************************************************ consensus_4174#0 GCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGC 270 consensus_4174#1 GCATAACTGAAGAGCAACAGCACAGCCGCATGCACTTAACTCTATTGCGCACGGTGCTGC 300 ************************************************************ consensus_4174#0 TGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATAC 330 consensus_4174#1 TGAAGGTGCTGACAGGACGGCACCGCACGAAACAACCGCTTGATACAGCGCTCACAATAC 360 ************************************************************ consensus_4174#0 GCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGAT 390 consensus_4174#1 GCACGCTGTGTTCTTGTTGTGACGCACAAACGGGCAGGGAACTCCAATGTAGGAAGCGAT 420 ************************************************************ consensus_4174#0 TTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACAC 450 consensus_4174#1 TTGAACGAACCACATTGCGGGTTCCACCTTAGTCCTTATTCAGGGTTTACACTTACACAC 480 ************************************************************ consensus_4174#0 ACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGG 510 consensus_4174#1 ACACACATACAACACACACAACAAAGACGAAACTATTAGCCAATTCGGGTCGTGTGAGGG 540 ************************************************************ consensus_4174#0 ACGAATTGATAGGTATCTCACAAGAAATGGAGAGTTTTATTTATTTAAGTAGCTCTAGTA 570 consensus_4174#1 ACGAATTGATAGGTATCTCACAAGAA---------------------------------- 566 ************************** consensus_4174#0 ACCCTCCCCA 580 consensus_4174#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||