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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence
[GCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCGTTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAAGTTGCTCTCTGTCGGGCCCGATCAGCGGCGGGCAGAGACGACCGGTCCGGACGGTGTGACGCGCGGCTCCTACTCCTATCTGGACGATAAGGGTGTGCAGCGAACGGTACAGTATATTGCCGGTGCCGGCATCGGTTACAAGGTGGTCCAGAGCACGGTCGGCGCAGGGACGCACCGGTTACAGCAGCCCAACTTTGGCATTAGCCACGTGGAGCAGAGTGAAATTGGTGACAATAACAATCCTTCCTATCAGACGGCTCCCTCGGGACCTGCCAGCGAGCGGCCCGGTACGTCCGGCGCGGGGTACGATCATGTCGCTCGTCCGTCCGCCGGTGGGTATGATGGTGGTTCGAATCGTCCGACGGCTCCTGGTGGATCGTACGATCCTCCAACGGGACCATCGGGGGCTGGTAGTAGCTACCCGGACGGACCCAAGCCAGGAATTACCGGCTATCCGGAGAGCAGTCGCCCAACGGGACAAGGATACGATGAGGAAGACTTTGACAGCAAGCGTCCTACAACGAGCTCTCCAAGCCTTCGTCCACCCACCACCGATCGACCGACGGGACCGAGTGACTCGAGCGAGACGTCCCGTGAAAAGTATCCTCCTTCCAGCGATC]
[+] EMBL BX625153 [GCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCGTTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAAGTTGCTCTCTGTCGGGCCCGATCAGCGGCGGGCAGAGACGACCGGTCCGGACGGTGTGACGCGCGGCTCCTACTCCTATCTGGACGATAAGGGTGTGCAGCGAACGGTACAGTATATTGCCGGTGCCGGCATCGGTTACAAGGTGGTCCAGAGCACGGTCGGCGCAGGGACGCACCGGTTACAGCAGCCCAACTTTGGCATTAGCCACGTGGAGCAGAGTGAAATTGGTGACAATAACAATCCTTCCTATCAGACGGCTCCCTCGGGACCTGCCAGCGAGCGGCCCGGTACGTCCGGCGCGGGGTACGATCATGTCGCTCGTCCGTCCGCCGGTGGGTATGATGGTGGTTCGAATCGTCCGACGGCTCCTGGTGGATCGTACGATCCTCCAACGGGACCATCGGGGGCTGGTAGTAGCTACCCGGACGGACCCAAGCCAGGAATTACCGGCTATCCGGAGAGCAGTCGCCCAACGGGACAAGGATACGATGAGGAAGACTTTGACAGCAAGCGTCCTACAACG ]
[+] EMBL BX611085 [ CTATCAGACGGCTCCCTCGGGACCTGCCAGTGAGCGGCCCGGTACGTCCGGCGCGGGGTACGATCATGTCGCTCGTCCGTCCGCCGGTGGGTATGATGGTGGTTCGAGCCGTCCGACGGCTCCTGGTGGATCGTACGATCCTCCAACGGGACCATCGGGGGCTGGCAGTAGCTACCCGGATGGGCCAAAGCCAGGAATTCCCGGCTATCCGGAGAGCAGTCGCCCAACGGGACAAGGATACGACGAGGAAGACTTTGACAGCAAGCGTCCTACAACGAGCTCTCCAAGCCTTCGTCCACCCACCACCGATCGACCGACGGGACCGAGTGACTCGAGCGAGACGTCCCGTGAAAAGTATCCTCCTTCCAGCGATC]
consensusID : consensus_4192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[AGAATCGCCACGAGGTNCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCGTTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAACGTTGCTCTCTGTCGGGCCCGATCAGCGTGCTGGTGCAGAGACTGACCTGTGTCCTGGACTGGTGTGACTGCTGCTGTGCTCCTACATCCGTATCTGGACTGATAAGTGGTTGTTGCAAGCTGAACGTGTACATGTATATTTGCCTGGTGCCTGGCATTCNGAGTTACAATGGTGGTCCANGAAGCACTGGTCTGGCTGCAGTGGACTGCACCTGGTTACATGCAGCCCAACTTTTGGCACTTAGCCAACGTGGATGACAGATGTGAAACTTTGGTCTGACAATAAGCAATTCGCCTTTCCATAATCACATGAACTAGTGCTCCCCATCTNGGGGGAACCATTGCCCAAGCTGATACGCGTGCCCCCGTGTACANGTCCTGTGCTCGCTGTCGTGTGTACTGAATCCATTGTCNGCTCTGGTCCTGTCTCTTGCCTGAGTTGGGTGTATTTGAGTTGCGTTGGGTTCTGAAGTC]
[+] EMBL AL931644 [AGAATCGCCACGAGGTNCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCGTTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAACGTTGCTCTCTGTCGGGCCCGATCAGCGTGCTGGTGCAGAGACTGACCTGTGTCCTGGACTGGTGTGACTGCTGCTGTGCTCCTACATCCGTATCTGGACTGATAAGTGGTTGTTGCAAGCTGAACGTGTACATGTATATTTGCCTGGTGCCTGGCATTCNGAGTTACAATGGTGGTCCANGAAGCACTGGTCTGGCTGCAGTGGACTGCACCTGGTTACATGCAGCCCAACTTTTGGCACTTAGCCAACGTGGATGACAGATGTGAAACTTTGGTCTGACAATAAGCAATTCGCCTTTCCATAATCACATGAACTAGTGCTCCCCATCTNGGGGGAACCATTGCCCAAGCTGATACGCGTGCCCCCGTGTACANGTCCTGTGCTCGCTGTCGTGTGTACTGAATCCATTGTCNGCTCTGGTCCTGTCTCTTGCCTGAGTTGGGTGTATTTGAGTTGCGTTGGGTTCTGAAGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4192#0 ----------------GCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCG 44
consensus_4192#1 AGAATCGCCACGAGGTNCCCACTGTACAAGACGCACAAGCAGGTTCGCGGCAAGGTCGCG 60
*******************************************
consensus_4192#0 TTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAA-GTTGCTCTCTGTCGGGCCCGATCA 103
consensus_4192#1 TTCGAGAGTGGACCGAGTGGTTCGGGACAGTACAACGTTGCTCTCTGTCGGGCCCGATCA 120
*********************************** ************************
consensus_4192#0 GCG-GCGGG--CAGAGAC-GACCGGT---CCGGAC-GGTGTGAC----GCGCGGCTCCTA 151
consensus_4192#1 GCGTGCTGGTGCAGAGACTGACCTGTGTCCTGGACTGGTGTGACTGCTGCTGTGCTCCTA 180
*** ** ** ******* **** ** * **** ******** ** *******
consensus_4192#0 CTCC--TATCTGGAC-GATAAGGGTGTGCAGC-----GAACG-GTACA-GTATATTG--C 199
consensus_4192#1 CATCCGTATCTGGACTGATAAGTGGTTGTTGCAAGCTGAACGTGTACATGTATATTTGCC 240
* * ********* ****** * ** ** ***** ***** ******* *
consensus_4192#0 CGGTGCC-GGCATC---GGTTACAA-GGTGGTCCAG--AGCAC-GGTCGG--CGCAG-GG 248
consensus_4192#1 TGGTGCCTGGCATTCNGAGTTACAATGGTGGTCCANGAAGCACTGGTCTGGCTGCAGTGG 300
****** ***** ******* ********* ***** **** * **** **
consensus_4192#0 AC-GCACC-GGTTACA-GCAGCCCAACTTT-GGCA-TTAGCCA-CGTGGA--GCAGA-GT 299
consensus_4192#1 ACTGCACCTGGTTACATGCAGCCCAACTTTTGGCACTTAGCCAACGTGGATGACAGATGT 360
** ***** ******* ************* **** ******* ****** **** **
consensus_4192#0 GAAA--TTGGT--GACAATAA-CAATCCTTCCTATCAGA--CGGCTCCCTCGGGACCTGC 352
consensus_4192#1 GAAACTTTGGTCTGACAATAAGCAATTCGCCTTTCCATAATCACATGAACTAGTGCTCCC 420
**** ***** ******** **** * * * ** * * * * * *
consensus_4192#0 CAGCGAGCGGCCCGGTACGTCCGGCGCGGGGTACGATCATGTCGCTCGTCCGTCCGCCGG 412
consensus_4192#1 CATCTNGGGGGAACCATTGCCCAAGCTGATACGCGTGCCC-CCGTGTACANGTCCTGTGC 479
** * * ** * ** * ** * ** **** *
consensus_4192#0 TGGGTATGATGGTGGTTCGAATCGTCCGACGGCTCCTGGTGGATCGTACGATCCTCCAAC 472
consensus_4192#1 TCGCTGTCGTG-TGTACTGAATCCATTGTCNGCTCTGGTCCTGTCTCTTG--CCTGAGTT 536
* * * * ** ** ***** * * **** * ** * ***
consensus_4192#0 GGGACCATCGGGGGCTGGTAGTAGCTACCCGGACGGACCCAAGCCAGGAATTACCGGCTA 532
consensus_4192#1 GGGTGTATTTGAG--TTGCGTTGGGTTCTGAAGTC------------------------- 569
*** ** * * * * * * * *
consensus_4192#0 TCCGGAGAGCAGTCGCCCAACGGGACAAGGATACGATGAGGAAGACTTTGACAGCAAGCG 592
consensus_4192#1 ------------------------------------------------------------
consensus_4192#0 TCCTACAACGAGCTCTCCAAGCCTTCGTCCACCCACCACCGATCGACCGACGGGACCGAG 652
consensus_4192#1 ------------------------------------------------------------
consensus_4192#0 TGACTCGAGCGAGACGTCCCGTGAAAAGTATCCTCCTTCCAGCGATC 699
consensus_4192#1 -----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||