cluster # 4194

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Anopheles gambiae
cluster # 4194 cluster # 4194 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4194#0 length = 707 sequences # 2

consensus_4194#1 length = 669 sequences # 1

consensusID : consensus_4194#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 707
fasta sequence

                              [CCGCGGACGCGTGGGTGCAGGCGTGCAAAAGTGAAGCAACACAGACACACACACACACACCGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGCCAAACGAAACAGCAATCCAGCTGCAGATCGAGAGCAAGTTAGTGGTGGATCTTGGTTGGTTGTTTGTCCCCTTTTTTTCCTCCGTTTCGGTGGTCGATGGTAGTTTTTGAGCGCACACAAGACAGGGAAAGGCGGTTTTCGCGCGGTTGAGTGTTACCAATTGTTGGCGAATAGTTTTTGTTTTAATTAAAGTACGATCGGTGAGACAAGTTAGCATTTTAAAACGCAACACTAGAGATCCACGTGTTCCAGTGAAACGATCGGTTGAAGGAAAAGCGACGCATCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTGCGGAAACAAGCGAACGGCTTCAGCATGACCCGGCGTACGGTGCAACCTTTGGCGCGCGAGCAGTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCGCTGGTCCTGTTCGGGGCGCTCGTGCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGATAGTGCCAGCAGCCTGTACGGCGATAACAAACACGCAAGCGACAAGCGCCCCTTCTTCGTCGGCAGCCGGTACGGGCGATCGCACGTGTACGGTGCGAAAGATATGCG]

[+] EMBL BM655497             [CCGCGGACGCGTGGGTGCAGGCGTGCAAAAGTGAAGCAACACAGACACACACACACACACCGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGCCAAACGAAACAGCAATCCAGCTGCAGATCGAGAGCAAGTTAGTGGTGGATCTTGGTTGGTTGTTTGTCCCCTTTTTTTCCTCCGTTTCGGTGGTCGATGGTAGTTTTTGAGCGCACACAAGACAGGGAAAGGCGGTTTTCGCGCGGTTGAGTGTTACCAATTGTTGGCGAATAGTTTTTGTTTTAATTAAAGTACGATCGGTGAGACAAGTTAGCATTTTAAAACGCAACACTAGAGATCCACGTGTTCCAGTGAAACGATCGGTTGAAGGAAAAGCGACGCATCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTGCGGAAACAAGCGAACGGCTTCAGCATGACCCGGCGTACGGTGCAACCTTTGGCGCGCGAGCAGTCCTCC                                                                                                                                                                                                                          ]
[+] EMBL BM630458             [                ccgGGCGTGCAAAAGTGAAGCAACACAGACACACACACACACACCGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGCCAAACGAAACAGCAATCCAGCTGCAGATCGAGAGCAAGTTAGTGGTGGATCTTGGTTGGTTGTTTGTCCCCTTTTTTTCCTCCGTTTCGGTGGTCGATGGTAGTTTTTGAGCGCACACAAGACAGGGAAAGGCGGTTTTCGCGCGGTTGAGTGTTACCAATTGTTGGCGAATAGTTTTTGTTTTAATTAAAGTACGATCGGTGAGACAAGTTAGCATTTTAAAACGCAACACTAGAGATCCACGTGTTCCAGTGAAACGATCGGTTGAAGGAAAAGCGACGCATCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTGCGGAAACAAGCGAACGGCTTCAGCATGACCCGGCGTACGGTGCAACCTTTGGCGCGCGAGCAGTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCGCTGGTCCTGTTCGGGGCGCTCGTGCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGATAGTGCCAGCAGCCTGTACGGCGATAACAAACACGCAAGCGACAAGCGCCCCTTCTTCGTCGGCAGCCGGTACGGGCGATCGCACGTGTACGGTGCGAAAGATATGCG]




>consensus_4194#0
CCGCGGACGCGTGGGTGCAGGCGTGCAAAAGTGAAGCAACACAGACACACACACACACAC
CGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGCCAAACGAAACAGCAATCCAGCTGCA
GATCGAGAGCAAGTTAGTGGTGGATCTTGGTTGGTTGTTTGTCCCCTTTTTTTCCTCCGT
TTCGGTGGTCGATGGTAGTTTTTGAGCGCACACAAGACAGGGAAAGGCGGTTTTCGCGCG
GTTGAGTGTTACCAATTGTTGGCGAATAGTTTTTGTTTTAATTAAAGTACGATCGGTGAG
ACAAGTTAGCATTTTAAAACGCAACACTAGAGATCCACGTGTTCCAGTGAAACGATCGGT
TGAAGGAAAAGCGACGCATCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTG
CGGAAACAAGCGAACGGCTTCAGCATGACCCGGCGTACGGTGCAACCTTTGGCGCGCGAG
CAGTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCG
CTGGTCCTGTTCGGGGCGCTCGTGCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGAT
AGTGCCAGCAGCCTGTACGGCGATAACAAACACGCAAGCGACAAGCGCCCCTTCTTCGTC
GGCAGCCGGTACGGGCGATCGCACGTGTACGGTGCGAAAGATATGCG

consensusID : consensus_4194#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [CCGCAGGCGTGCAAAAGTGAAGCAAAACAGACACACACACACACACACACCGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGGCAAACGAAACAGCAATCCAGCTGCAGATCGAGAGCAACGACCAGCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTGCGGAAACAAGCGAACGGCATCAGCATGACCCGGCGAACGGTGCAACCTTTGGCGCGCGAGCAGTCCTCATCCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCGCTGGTTCTGTTCGGGGCGCTCGTCCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGATAGTGCCAGCAGCCTGTACGGCGATAACAAACATGCAAGCGATAAGCGCCCATTCTTCGTCGGCAGCCGGTACGGGCGATCGCACGTGTACGGAGCAAAGGATATGCGACAAGTAAACGTGGTTCCGCGCAACGATCGCTTCTTCCTCGGCTCACGGTACGGCAAACGTTCCGACCTGACGAAGGAAATCGAATCCGACAACAATAATGGTATCGCCGAGCTGACCTATCTCGCCTGTCTGCATACGGGCGTCTCGAATCTGTACCGATGCTACAGTCGCGATTCATCTTCGAATGCACTACACCAGCAGGAAACGGAACAGT]

[+] EMBL BM577905             [CCGCAGGCGTGCAAAAGTGAAGCAAAACAGACACACACACACACACACACCGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGGCAAACGAAACAGCAATCCAGCTGCAGATCGAGAGCAACGACCAGCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTGCGGAAACAAGCGAACGGCATCAGCATGACCCGGCGAACGGTGCAACCTTTGGCGCGCGAGCAGTCCTCATCCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCGCTGGTTCTGTTCGGGGCGCTCGTCCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGATAGTGCCAGCAGCCTGTACGGCGATAACAAACATGCAAGCGATAAGCGCCCATTCTTCGTCGGCAGCCGGTACGGGCGATCGCACGTGTACGGAGCAAAGGATATGCGACAAGTAAACGTGGTTCCGCGCAACGATCGCTTCTTCCTCGGCTCACGGTACGGCAAACGTTCCGACCTGACGAAGGAAATCGAATCCGACAACAATAATGGTATCGCCGAGCTGACCTATCTCGCCTGTCTGCATACGGGCGTCTCGAATCTGTACCGATGCTACAGTCGCGATTCATCTTCGAATGCACTACACCAGCAGGAAACGGAACAGT]




>consensus_4194#1
CCGCAGGCGTGCAAAAGTGAAGCAAAACAGACACACACACACACACACACCGGCGGCGCA
GTGTCGATTAACAACAGGTGTGTGGCAAACGAAACAGCAATCCAGCTGCAGATCGAGAGC
AACGACCAGCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTGCGGAAACAAG
CGAACGGCATCAGCATGACCCGGCGAACGGTGCAACCTTTGGCGCGCGAGCAGTCCTCAT
CCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCGCTGGTTCTGTTCG
GGGCGCTCGTCCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGATAGTGCCAGCAGCC
TGTACGGCGATAACAAACATGCAAGCGATAAGCGCCCATTCTTCGTCGGCAGCCGGTACG
GGCGATCGCACGTGTACGGAGCAAAGGATATGCGACAAGTAAACGTGGTTCCGCGCAACG
ATCGCTTCTTCCTCGGCTCACGGTACGGCAAACGTTCCGACCTGACGAAGGAAATCGAAT
CCGACAACAATAATGGTATCGCCGAGCTGACCTATCTCGCCTGTCTGCATACGGGCGTCT
CGAATCTGTACCGATGCTACAGTCGCGATTCATCTTCGAATGCACTACACCAGCAGGAAA
CGGAACAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4194#0      CCGCGGACGCGTGGGTGCAGGCGTGCAAAAGTGAAGCAACACAGACACACACACACACAC 60
consensus_4194#1      ------------------------------------------------------------
                                                                                  

consensus_4194#0      CGGCGGCGCAGTGTCGATTAACAACAGGTGTGTGCCAAACGAAACAGCAATCCAGCTGCA 120
consensus_4194#1      ------------------------------------------------------------
                                                                                  

consensus_4194#0      GATCGAGAGCAAGTTAGTGGTGGATCTTGGTTGGTTGTTTGTCCCCTTTTTTTCCTCCGT 180
consensus_4194#1      ------------------------------------------------------------
                                                                                  

consensus_4194#0      TTCGGTGGTCGATGGTAGTTTTTGAGCGCACACAAGACAGGGAAAGGCGGTTTTCGCGCG 240
consensus_4194#1      -------------------------------------------------------CCGCA 5
                                                                              *** 

consensus_4194#0      GTTGAGTGTTACCAATTGTTGGCGAATAGTTTTTGTTTTAATTAAAGTACGATCGGTGAG 300
consensus_4194#1      G--GCGTGCAA--AAGTGAAGCAAAACAG---ACACACACACACACACAC-ACCGGCGGC 57
                      *  * ***  *  ** **  *   ** **           *   *   ** * *** *  

consensus_4194#0      ACAAGTTAGCATTTTAAAACGCAACACTAGAGATCCACGTGTTCCAGTGAAACGATCGGT 360
consensus_4194#1      GCAG--TGTCGATTAACAACAGGTGTGTGGCAAACGAAACAG--CAATCCAGCTGCAGAT 113
                       **   *  *  ** * ***       * *  * * *       ** *  * *    * *

consensus_4194#0      TGAAGGAAAAGCGACGCATCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTG 420
consensus_4194#1      CGAGAGCAA--CGAC-CAGCGCCTTTCCGGGCCATCATTATTATCCTGCTCGATTGGTTG 170
                       **  * **  **** ** *****************************************

consensus_4194#0      CGGAAACAAGCGAACGGCTTCAGCATGACCCGGCGTACGGTGCAACCTTTGGCGCGCGAG 480
consensus_4194#1      CGGAAACAAGCGAACGGCATCAGCATGACCCGGCGAACGGTGCAACCTTTGGCGCGCGAG 230
                      ****************** **************** ************************

consensus_4194#0      CAGTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCTTCTCTTGCATCAGCACCACCGTCGCG 540
consensus_4194#1      CAGTCCTCATCCTCCTCCTCCTCC---TTCCTCTTCTCTTGCATCAGCACCACCGTCGCG 287
                      ******** ***************   *********************************

consensus_4194#0      CTGGTCCTGTTCGGGGCGCTCGTGCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGAT 600
consensus_4194#1      CTGGTTCTGTTCGGGGCGCTCGTCCTGGCGGCGGTTGCCGATGCTGACCCGATGGTGGAT 347
                      ***** ***************** ************************************

consensus_4194#0      AGTGCCAGCAGCCTGTACGGCGATAACAAACACGCAAGCGACAAGCGCCCCTTCTTCGTC 660
consensus_4194#1      AGTGCCAGCAGCCTGTACGGCGATAACAAACATGCAAGCGATAAGCGCCCATTCTTCGTC 407
                      ******************************** ******** ******** *********

consensus_4194#0      GGCAGCCGGTACGGGCGATCGCACGTGTACGGTGCGAAAGATATGCG------------- 707
consensus_4194#1      GGCAGCCGGTACGGGCGATCGCACGTGTACGGAGCAAAGGATATGCGACAAGTAAACGTG 467
                      ******************************** ** ** ********             

consensus_4194#0      ------------------------------------------------------------
consensus_4194#1      GTTCCGCGCAACGATCGCTTCTTCCTCGGCTCACGGTACGGCAAACGTTCCGACCTGACG 527
                                                                                  

consensus_4194#0      ------------------------------------------------------------
consensus_4194#1      AAGGAAATCGAATCCGACAACAATAATGGTATCGCCGAGCTGACCTATCTCGCCTGTCTG 587
                                                                                  

consensus_4194#0      ------------------------------------------------------------
consensus_4194#1      CATACGGGCGTCTCGAATCTGTACCGATGCTACAGTCGCGATTCATCTTCGAATGCACTA 647
                                                                                  

consensus_4194#0      ----------------------
consensus_4194#1      CACCAGCAGGAAACGGAACAGT 669