cluster # 4203

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Anopheles gambiae
cluster # 4203 cluster # 4203 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4203#0 length = 688 sequences # 1

consensus_4203#1 length = 647 sequences # 1
consensus_4203#2 length = 520 sequences # 1

consensusID : consensus_4203#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [TGCTCTAAGCCCCCCTCCTAGCCGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGTTTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGTTTAAGTAAACGGATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGAACGTATGGGTGCGCTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATATATACATACATAAACATAAACACAAACGCATATAGATACGGTTTTGGTGTGCTGCTTACCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCCACCCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCTCTGCAATCAAGCAAAGCAGAACGTCGCTGTTGGGGTACCACATGAGTCCCTTCAAGTGGACATGAGTGGTGTACAAATTATTGGTGGCCTATGAAGATGGACAAAATCTGTCNTACTTAGTTTTTAGCTGTTTAGATTGAATAGAGAGAAACNAGCCCCGGGTTTGCAAAGAATGTTTAGAACGGAGANGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGGGGCAACAGTACGTCTGGGTCGTCAGCTCGTTGANGCCTCCTTAGATGGGTAAAATGATCTTTTGTACAT]

[+] EMBL BX625375             [TGCTCTAAGCCCCCCTCCTAGCCGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGTTTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGTTTAAGTAAACGGATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGAACGTATGGGTGCGCTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATATATACATACATAAACATAAACACAAACGCATATAGATACGGTTTTGGTGTGCTGCTTACCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCCACCCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCTCTGCAATCAAGCAAAGCAGAACGTCGCTGTTGGGGTACCACATGAGTCCCTTCAAGTGGACATGAGTGGTGTACAAATTATTGGTGGCCTATGAAGATGGACAAAATCTGTCNTACTTAGTTTTTAGCTGTTTAGATTGAATAGAGAGAAACNAGCCCCGGGTTTGCAAAGAATGTTTAGAACGGAGANGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGGGGCAACAGTACGTCTGGGTCGTCAGCTCGTTGANGCCTCCTTAGATGGGTAAAATGATCTTTTGTACAT]




>consensus_4203#0
TGCTCTAAGCCCCCCTCCTAGCCGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGT
TTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGTTTAAGTAAACG
GATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGAACGTATGGGTGCG
CTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATA
TATACATACATAAACATAAACACAAACGCATATAGATACGGTTTTGGTGTGCTGCTTACC
TGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCCACCCGCAGGCTACCAGACGGA
CCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCTCTGCAATCAAGCAAAGCAGAACG
TCGCTGTTGGGGTACCACATGAGTCCCTTCAAGTGGACATGAGTGGTGTACAAATTATTG
GTGGCCTATGAAGATGGACAAAATCTGTCNTACTTAGTTTTTAGCTGTTTAGATTGAATA
GAGAGAAACNAGCCCCGGGTTTGCAAAGAATGTTTAGAACGGAGANGTTTTTGGACAGGC
GGCTCACGGCCCAGTCTGGGGCAACAGTACGTCTGGGTCGTCAGCTCGTTGANGCCTCCT
TAGATGGGTAAAATGATCTTTTGTACAT

consensusID : consensus_4203#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [CCGCGTTCTATTTCGATCGGTTTAATTCCCCCAATCGTTTTTGCTGTTGGTAGTTGAGGAGTTGTTTAACGTTGTAGATCGGATTCAAATTTGCTCGGTACTGATTTGCTTACAGGTTTTGTTATAGTTTTGTGCGTATGTTACCATCTAGTTCCGTCCTCGTTTTTTTTGTTGTTGTCTGCTCTAAGCCCCCCCCTCCAGACGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGTTTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGGTTAAGTGAACGGATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGACGTATGGGTTGCGCTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATATATATACATACATAAACATAAACACAAACGCATATAGAGATACGGTTTGGTGTGCTGCTTATCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCACCCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCCTGGGGTGCCACATGAGTCCCCTCCAAGTGTGGTGTACAAATTATTGGTGGCCTATGAAGATGGACAAA]

[+] EMBL BM649203             [CCGCGTTCTATTTCGATCGGTTTAATTCCCCCAATCGTTTTTGCTGTTGGTAGTTGAGGAGTTGTTTAACGTTGTAGATCGGATTCAAATTTGCTCGGTACTGATTTGCTTACAGGTTTTGTTATAGTTTTGTGCGTATGTTACCATCTAGTTCCGTCCTCGTTTTTTTTGTTGTTGTCTGCTCTAAGCCCCCCCCTCCAGACGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGTTTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGGTTAAGTGAACGGATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGACGTATGGGTTGCGCTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATATATATACATACATAAACATAAACACAAACGCATATAGAGATACGGTTTGGTGTGCTGCTTATCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCACCCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCCTGGGGTGCCACATGAGTCCCCTCCAAGTGTGGTGTACAAATTATTGGTGGCCTATGAAGATGGACAAA]




>consensus_4203#1
CCGCGTTCTATTTCGATCGGTTTAATTCCCCCAATCGTTTTTGCTGTTGGTAGTTGAGGA
GTTGTTTAACGTTGTAGATCGGATTCAAATTTGCTCGGTACTGATTTGCTTACAGGTTTT
GTTATAGTTTTGTGCGTATGTTACCATCTAGTTCCGTCCTCGTTTTTTTTGTTGTTGTCT
GCTCTAAGCCCCCCCCTCCAGACGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGT
TTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGGTTAAGTGAACG
GATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGACGTATGGGTTGCG
CTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATA
TATATACATACATAAACATAAACACAAACGCATATAGAGATACGGTTTGGTGTGCTGCTT
ATCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCACCCGCAGGCTACCAGACG
GACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCCTGGGGTGCCACATGAGTCCCC
TCCAAGTGTGGTGTACAAATTATTGGTGGCCTATGAAGATGGACAAA

consensusID : consensus_4203#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [AGATCGCCCGAGGTAACGCATATAGATACGGTTTTGGTGTGCTGCTTACCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCCAACCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCTCTGCAATCAAGCAAAGCAGAACGTCGCTGTTGTGGTACCACATGAGTCCCTTGAAGTGGACATGAGTGGTGTACAAATTATTGGTGGCTATGAAGATGGACAAAATCTGTCGTACTTAGTTTTTAGCTGTTTAGATTGAATAGAGAGAAACAAGCCCCGGGTTTGCAAAGAAATGTTTAGAACGGAGAGGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGGTGCAACAGTACGTCTGGTTCGTCAGCTCGTTGAGGCCTCCTTAGATGGTTAAATGATCTTTTGTACATGTTTCGTAGTTGCTTAAGTCACTCCCTTTTCCCTTTTTCACTTTTGGCTCATTTACTGCCCCTATTTTGGAGAGTTCTATGTT]

[+] EMBL AL930297             [AGATCGCCCGAGGTAACGCATATAGATACGGTTTTGGTGTGCTGCTTACCTGCTATTGTGGAACTATTTATTGTGGAACAATCCCCCCCAACCGCAGGCTACCAGACGGACCATTCTGAGCGTTTAGCAAGTAGAAACTACTCACCTCTGCAATCAAGCAAAGCAGAACGTCGCTGTTGTGGTACCACATGAGTCCCTTGAAGTGGACATGAGTGGTGTACAAATTATTGGTGGCTATGAAGATGGACAAAATCTGTCGTACTTAGTTTTTAGCTGTTTAGATTGAATAGAGAGAAACAAGCCCCGGGTTTGCAAAGAAATGTTTAGAACGGAGAGGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGGTGCAACAGTACGTCTGGTTCGTCAGCTCGTTGAGGCCTCCTTAGATGGTTAAATGATCTTTTGTACATGTTTCGTAGTTGCTTAAGTCACTCCCTTTTCCCTTTTTCACTTTTGGCTCATTTACTGCCCCTATTTTGGAGAGTTCTATGTT]




>consensus_4203#2
AGATCGCCCGAGGTAACGCATATAGATACGGTTTTGGTGTGCTGCTTACCTGCTATTGTG
GAACTATTTATTGTGGAACAATCCCCCCCAACCGCAGGCTACCAGACGGACCATTCTGAG
CGTTTAGCAAGTAGAAACTACTCACCTCTGCAATCAAGCAAAGCAGAACGTCGCTGTTGT
GGTACCACATGAGTCCCTTGAAGTGGACATGAGTGGTGTACAAATTATTGGTGGCTATGA
AGATGGACAAAATCTGTCGTACTTAGTTTTTAGCTGTTTAGATTGAATAGAGAGAAACAA
GCCCCGGGTTTGCAAAGAAATGTTTAGAACGGAGAGGTTTTTGGACAGGCGGCTCACGGC
CCAGTCTGGTGCAACAGTACGTCTGGTTCGTCAGCTCGTTGAGGCCTCCTTAGATGGTTA
AATGATCTTTTGTACATGTTTCGTAGTTGCTTAAGTCACTCCCTTTTCCCTTTTTCACTT
TTGGCTCATTTACTGCCCCTATTTTGGAGAGTTCTATGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4203#0      TGCTCTAAGCCCCCCTCCTAGCCGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGT 60
consensus_4203#2      ------------------------------------------------------------
consensus_4203#1      ------------------------------------------------------------
                                                                                  

consensus_4203#0      TTTGATGATCTTTTTCTTTTCTGCCAGAAAGACTCCAGTCCAGTCGTGTTTAAGTAAACG 120
consensus_4203#2      ------------------------------------------------------------
consensus_4203#1      ------------------------------------------------------------
                                                                                  

consensus_4203#0      GATATTATATGTGTCTATGTAGCATTAGGGATACGCTCGGGAAAGGAACGTATGGGTGCG 180
consensus_4203#2      ------------------------------------------------------------
consensus_4203#1      -------------------------------------------CCGCGTTCTATTTCGAT 17
                                                                                  

consensus_4203#0      CTTGCGTGCGCGTATTGCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATA 240
consensus_4203#2      ------------------------------------------------------------
consensus_4203#1      CGGTTTAATTCCCCCAATCGTTTTTGCTGTTGGTAGTTGAGGAGTTGTTTAACGTTGTAG 77
                                                                                  

consensus_4203#0      TATACATACATAAACATAAACACAAA---CGCATATAGATACGGTTTTGGTGTGCTGC-- 295
consensus_4203#2      ----------AGATCGCCCGAGGTAA---CGCATATAGATACGGTTTTGGTGTGCTGC-- 45
consensus_4203#1      ATCGGATTCAAATTTGCTCGGTACTGATTTGCTTACAGGTTTTGTTATAGTTTTGTGCGT 137
                                                    ** ** ** *   *** * ** *  ***  

consensus_4203#0      ---TTACCTGCTATTGTGGAACT-ATTTATTGTGGAACAATCCCCCCCACCCGCAGGCTA 351
consensus_4203#2      ---TTACCTGCTATTGTGGAACT-ATTTATTGTGGAACAATCCCCCCCAACCGCAGGCTA 101
consensus_4203#1      ATGTTACCATCTAGTTCCGTCCTCGTTTTTTTTGTTGTTGTCTGCTCTAAGCCCCCCCCT 197
                         *****  *** *   *  **  *** ** **      **  * * *  * *   *  

consensus_4203#0      CCAGACGG---ACCATTCTGAGCGTTTAGCAAG-----TAGAAACTACTCACCTCTGCAA 403
consensus_4203#2      CCAGACGG---ACCATTCTGAGCGTTTAGCAAG-----TAGAAACTACTCACCTCTGCAA 153
consensus_4203#1      CCAGACGATCTACAACACTCTGACTTTGGCGGTGGCCCCGCGTTTTGATGATCTTTTTCT 257
                      *******    ** *  **  *  *** **               *  * * ** *    

consensus_4203#0      TCAAGCAAAGCAGAACGTCGCTGTTGGGGTA-CCACATGAGTCCCT-TCAAGTGGACATG 461
consensus_4203#2      TCAAGCAAAGCAGAACGTCGCTGTTGTGGTA-CCACATGAGTCCCT-TGAAGTGGACATG 211
consensus_4203#1      TTTCTGCCAGAAAGACTCCAGTCCAGTCGTGGTTAAGTGAACGGATATTATATGTGTCTA 317
                      *       ** *  **  *  *   *  **    *  ***     * * *  **    * 

consensus_4203#0      AGTGGTGTACAAATTATTGGTGGCCTATGAAG-ATGGACAAAATCTGTCNTACTTAGTTT 520
consensus_4203#2      AGTGGTGTACAAATTATTGGTGGC-TATGAAG-ATGGACAAAATCTGTCGTACTTAGTTT 269
consensus_4203#1      TGTAGCATTAGGGATACGCTCGGGAAAGGACGTATGGGTTGCGCTTG-CGTGCGCGTATT 376
                       ** *  *      **     **   * ** * ****        ** * * *     **

consensus_4203#0      TTAGCTGTTTAGATTGAATAGAGAGA-AACNAGCCCCGGGTTTGCAAAGAA-TGTTTAGA 578
consensus_4203#2      TTAGCTGTTTAGATTGAATAGAGAGA-AACAAGCCCCGGGTTTGCAAAGAAATGTTTAGA 328
consensus_4203#1      GCGAAACGAGAGACTGAATCGATCGATAGCTCTACCTATATATATATATACATACATAAA 436
                                *** ***** **  ** * *    **    * *  * * *  *   ** *

consensus_4203#0      -----ACGGAGANGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGG-GGCAACAGTACGT 632
consensus_4203#2      -----ACGGAGAGGTTTTTGGACAGGCGGCTCACGGCCCAGTCTGG-TGCAACAGTACGT 382
consensus_4203#1      CATAAACACAAACGCATATAGAGATACGGTTTGGTGTGCTGCTTATCTGCTATTGTGGAA 496
                           **  * * *  * * ** *  *** *    *  * *  *    ** *  **    

consensus_4203#0      CTGGGT--CGTCAGCTCGTTGANGCCTCCTTAGATGGGTAAAATGATCTTTTGTACAT-- 688
consensus_4203#2      CTGGTT--CGTCAGCTCGTTGAGGCCTCCTTAGATGGTTAAA-TGATCTTTTGTACATGT 439
consensus_4203#1      CTATTTATTGTGGAACAATCCCCCCACCCGCAGGCTACCAGA-CGGACCATTCTGAGCGT 555
                      **   *   **       *     *  **  **      * *  *  *  ** *      

consensus_4203#0      ------------------------------------------------------------
consensus_4203#2      TTCGTAGTTGCTTA--AGTCACTCCCTTTTCCCTTTTTCACTTTTGGCTCATTTACTGCC 497
consensus_4203#1      TTAGCAAGTAGAAACTACTCACCCTGGGGTGCCACATGAGTCCCCTCCAAGTGTGGTGTA 615
                                                                                  

consensus_4203#0      ---------------------------------
consensus_4203#2      CCTATTTTGGAGAGTTCTATGTT---------- 520
consensus_4203#1      CAAATTATTG-GTGGCCTATGAAGATGGACAAA 647