These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence [CCGAAGCGAACACCAGCCACCTGCCTTGGCCGCTTGGTACGAGTCCCATCCAACCATCCGATTGCAGTTGCTAGAGACGAGTCTCATCATACTTTCCTGTTGATTTGACAGAAACCCAAGGGCAGGCAGTTAGATTAGGGAAGCGGGTTGTAAGCATATACCCGGTTCTATGTACATACATTTACTTCCTGCTACCGTGCAGGCGACGTACCTCGGTAGTGTAGGAAACGGACCCAACCTGTAATTACCAACGTGTGTAACATTTTGTGCAGATGTGGATGTATGCAAATGTTGGAAATAATGTGTAAGAAAATT----CAAACCAACCAACCAACCGCTCTTCAATTTATATCTCTCATGTATCGTTCCCGTGCCGCTGAATGCGGTTGCCCGTTGTGCGATTATTGTACACCCGTTTTCTTAGGAATATAACCGAATTCTAAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCAGGGGGATGAGGTGTAAGAGCCGTTAGTGTGAGATCGAGTAGGAAACCTATATGAACAAACCTAGTAGCAAGAGGCAACAACCTAGAGACTGATCTTTGTACGTTTTAGAACTAGTCCACGAGTACGTTCGGGTGCGATCGAGAGCGATCCGTGGTAATGCGCTCGAACGAACCCGGCATATGTTGTACTTTCCAATCGTTTTCCACCGTCGTATTTCTTTTTCATTG] [+] EMBL BM580598 [CCGAAGCGAACACCAGCCACCTGCCTTGGCCGCTTGGTACGAGTCCCATCCAACCATCCGATTGCAGTTGCTAGAGACGAGTCTCATCATACTTTCCTGTTGATTTGACAGAAACCCAAGGGCAGGCAGTTAGATTAGGGAAGCGGGTTGTAAGCATATACCCGGTTCTATGTACATACATTTACTTCCTGCTACCGTGCAGGCGACGTACCTCGGTAGTGTAGGAAACGGACCCAACCTGTAATTACCAACGTGTGTAACATTTTGTGCAGATGTGGATGTATGCAAATGTTGGAAATAATGTGTAAGAAAATT CAAACCAACCAACCAACCGCTCTTCAATTTATATCTCTCATGTATCGTTCCCGTGCCGCTGAATGCGGTTGCCCGTTGTGCGATTATTGTACACCCGTTTTCTTAGGAATATAACCGAATTCTAAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCAGGGGGATGAGGTGTAAGAGCCGTTAGTGTGAGATCGAGTAGGAAACCTATATGAACAAACCTAGTAGCAAGAGGCAACAACCTAGAGACTGATCTTTGTACGTTTTAGAACTAGTCCACGAGTACGTTCGGGTGCGATCGAGAGCGATCCGTGGTAATGCGCTCGAACGAACCCGGCATATGTTGTACTTTCCAATCGTTTTCCACCGTCGTATTTCTTTTTCATTG] [+] EMBL BX609755 [ CCCATCCAACCAACCGATTGCAGTTTTTAGAGACGACTCTCATCATACTTTCCTGTTGATTTGACAGAAACCCAAGGGCAGGCAGTTAGATTAGGGAAGCGGGTTGTAAGCATATACCCGGTTCTATGTACATACATTTACTTCCTGCTACCGTGCAGGCGACGTACCTCGGTAGTGTAGGAAACGGACCCAACCTGTAATTACCAACGTGTGTAACATTTTGTGCAGATGTGGATGTATGCAAATGTTGGAAATAATGTGTAAGAAAATTCAAACAAACCAACCAACCAACCGCTCTTCAATTTATATCTCTCATGTATCGTTCCCGTGGCGCTGAATGCGGTTGCCCGTTGTGCGAATATTGTACACCCGTTTTCTTACGAATGTAACCGAATTCTAAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCAGGGGGATGAGGTGTAAGAGCCGTTAGTGTGAGATCGAGTAGGAAACCTATATTAACAA ] consensusID : consensus_4204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [CCGCCCACGCGTCCGGTTGTGCGAATATTGTACACCCGTTTTCTTAGGAATGTAACCGAATTCTCAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCAGGTGGATGAGGTGTAAGAGCCGTTAGTGGAGATCGAGTAGGAAACCTATATGAACAAACCTAGTAGCAAGAGGCGACAACCTAGAGACTGATCTTTGTACGTTTTAGAACTAGTCCACGAGTACGTTCGGGTGCGATCGAAAGCGATCCGTGGTAATGCGCTCGAACGAACCCGGCATATGTTGTACTTTCCAATCGTTTTCCGCCGTCGTGTAAGCGTTGCACTACTTTTATTTCTTTTTCATTGATTATCGAACCGCTTCGTTTTCATAAGTCTACAGTTGGAGGAGTGAAATTAAATTTGTCTTTTATTCAATTCAAAACAGGGTAGACTCAAAGCCAAACGCCAACATATACAATGCACCCAAACATACACACTTTTACTGATCTTCTCTACTACAGCACCTATCGTTTCACAAGTTGCACATATAAACTGTTACTTAAATTGTATTGTCACGATATCATCGTCGTCAATCGTGTTTGTGTGTGTGCATGTGTTGGTTGAATGGTTTGGAGAATGGAGCGTGTTTTGTTT] [+] EMBL BM656019 [CCGCCCACGCGTCCGGTTGTGCGAATATTGTACACCCGTTTTCTTAGGAATGTAACCGAATTCTCAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTGCAGGTGGATGAGGTGTAAGAGCCGTTAGTGGAGATCGAGTAGGAAACCTATATGAACAAACCTAGTAGCAAGAGGCGACAACCTAGAGACTGATCTTTGTACGTTTTAGAACTAGTCCACGAGTACGTTCGGGTGCGATCGAAAGCGATCCGTGGTAATGCGCTCGAACGAACCCGGCATATGTTGTACTTTCCAATCGTTTTCCGCCGTCGTGTAAGCGTTGCACTACTTTTATTTCTTTTTCATTGATTATCGAACCGCTTCGTTTTCATAAGTCTACAGTTGGAGGAGTGAAATTAAATTTGTCTTTTATTCAATTCAAAACAGGGTAGACTCAAAGCCAAACGCCAACATATACAATGCACCCAAACATACACACTTTTACTGATCTTCTCTACTACAGCACCTATCGTTTCACAAGTTGCACATATAAACTGTTACTTAAATTGTATTGTCACGATATCATCGTCGTCAATCGTGTTTGTGTGTGTGCATGTGTTGGTTGAATGGTTTGGAGAATGGAGCGTGTTTTGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4204#0 CCGAAGCGAACACCAGCCACCTGCCTTGGCCGCTTGGTACGAGTCCCATCCAACCATCCG 60 consensus_4204#1 ----------------CCGCCCACGC-GTCCGGTTG-TGCGAATATTGTACACCCGTTTT 42 ** ** * * *** *** * *** * * ** ** * consensus_4204#0 ATTGCAGTTGCTAGAGACGAGTCTCATCATACTTTCCTGTTGATTTGACAGAAACCCAAG 120 consensus_4204#1 CTTAGGAATGTAACCGAATTCTCAAGTAATTACGTTCATCCTAGGTAATGCACACCCGAT 102 ** ** * ** ** * ** * * * * * * **** * consensus_4204#0 GGCAGGCAGTTAGATTAGGGAAGCGGGTTGTAAGCATATACCCGGTTCTATGTACATACA 180 consensus_4204#1 TGCAGGTGGATGAGGTGTAAGAGCCGTTAGTGGAGATCGAGTAGGAAACCTATATGAACA 162 ***** * * * *** * * ** ** * ** * ** *** consensus_4204#0 TTTACTTCCTGCTACCGTGCAGGCGACGTACCTCGGTAGTGTAGGAAACGGACCCAACCT 240 consensus_4204#1 A-----ACCTAGTAGCAAG-AGGCGACA-ACCT----------AGAGACTGATCTT-TGT 204 *** ** * * ******* **** ** ** ** * * consensus_4204#0 GTAATTACCAACGTGTGTAACATTTTGTGCAGATGTGGATGTATGCAAATGTTGGAAATA 300 consensus_4204#1 ACGTTTTAGAACTAGTCCACGAGTACGTTCGGGTGCGATCGAAAGCGA---TCCGTGGTA 261 ** *** ** * * * ** * * ** * * * ** * * * ** consensus_4204#0 ATGTGTAAGAAAATTCAAACCAACCAACCAACCGCTCTTCAATTTATATCTCTCATGTAT 360 consensus_4204#1 ATGCGCTCGAACG---AACCCGGCATATGTTGTACTTTCCAATCGTTTTCCGCC--GTCG 316 *** * *** ** ** * * ** * **** * ** * ** consensus_4204#0 CGTTCCCGTGCCGCTGAATGCGGTTGCCCGTTGTGCGATTATTGTACACC--CGTTTTCT 418 consensus_4204#1 TGTAAGCGTTGCACT-ACTTTTATTTCTTTTTCATTGATTATCGAACCGCTTCGTTTTCA 375 ** *** * ** * * ** * ** ****** * ** * ******* consensus_4204#0 TAGGAATATAACCGAATTCTAAAGTAATTACGTTCATCCTAGGTAATGCACACCCGATTG 478 consensus_4204#1 TAAGTCTACAGTTGGAGG--AGTGAAATTAAATTTGTCTTT---------TATTCAATT- 423 ** * ** * * * * * ***** ** ** * * * *** consensus_4204#0 CAGGGGGATGAGGTGTAAGAGCCGTTAGTGTGAGATCGAGTAGGAAACCTATATGAACAA 538 consensus_4204#1 CAAAACAGGGTAGACTCAAAGCCA--AACGCCAACATATACAATGCACCCAAACATACAC 481 ** * * * * **** * * * * *** * * *** consensus_4204#0 ACCTAGTAGCAAGAGGCAACAACCTAGAGACTGATCTTT-GTACGTTTTAGAACTAGTCC 597 consensus_4204#1 ACTTT-TACTGATCTTCTCTACTACAGCACCTATCGTTTCACAAGTTGCACATATAAACT 540 ** * ** * * * ** ** *** * *** * * ** * consensus_4204#0 ACGAGTACGTTCGGGTGCGATCGAGAGCGATCCGTGGTAAT-GCGCTCGAACGAACCCGG 656 consensus_4204#1 GTTACTTAAATTGTATTGTCACGATATC-ATCGTCGTCAATCGTGTTTGTGTGTGT---G 596 * * * * * *** * * *** * *** * * * * * * consensus_4204#0 CATATGTTGTACTTTCCAATCGTTTTCC-ACCGTCGTATTTCTTTTTCATTG 707 consensus_4204#1 CATGTGTTGG----TTGAATGGTTTGGAGAATGGAGCGTGTTTTGTTT---- 640 *** ***** * *** **** * * * * * ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||