These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 888 fasta sequence [CATGCCTGCTTTTGTTTTATTTTTTTTTTCTTATTAACTCTTCTGTTTATTTCATACACGATTTTCTTTTCTTCTGTTTTTGGTCCACAATTGAGCATCTTCCACAAATTCTTATAACATCAACATCAGTCTTTGGAATTCAATCTTTGCTTAAGAGTAACAAAAGCTTACCCCCTCCTTTCAAAGATGTACAGTTCATAGTTTTAACAGTTAACATTGCATTGTAATTTTCTTGAAGTTTTACTTCTTAAATTCACTTACGAGATCCAGCCCTGAAGTAATTATTGATTTGCCAAGTTTTGTGAAAAAAAAACATAATTCGTTTAATCCAAACTACATCTTATTGACTTAAATTCAATTCAATAAAACAACAAAATGAATGAAATATAAAATCGGTAGAGATAGTCTATAAGGAAGATATTACACGATATCAAATGTCTCATAAGTGTTGGAGACCGCTTTTATACTAATTCTAGCAAAACGCTCAGTTTCGCGGTTTACAGACGGGTAAGAAAAAAAAACAGCGTAATAGAAAAATAGGGGTTTAACAAGATTTNGTCTTGTTTAACCTTTAATTCAGATTCATGAACGTTCCTACCAACGGAAATAAAGAATCTCACTTGTTCTTAAAATTTGTTCGCAAAAGGTGAATAATATAAAAGAAAATAGCATGAAGCTTTGTTCCCCTTTTGCTCTACCGGAGGCTTAAAAGGGAACGTTTTAATGCTTCAACAATGGTGACGACTGACATTGGGGGTGATCTGTTAAGGGCCACTTAGGGTTCCGGTTATGGCATTCTCNCTAATTAGGGGATAACACCCAAAAATNTTCTAACCCCAANGGTCAAANTCTAACGTCCAAGGACNNTTATGNAGTTCCCCGAATTGT] [+] EMBL BX466709 [CATGCCTGCTTTTGTTTTATTTTTTTTTTCTTATTAACTCTTCTGTTTATTTCATACACGATTTTCTTTTCTTCTGTTTTTGGTCCACAATTGAGCATCTTCCACAAATTCTTATAACATCAACATCAGTCTTTGGAATTCAATCTTTGCTTAAGAGTAACAAAAGCTTACCCCCTCCTTTCAAAGATGTACAGTTCATAGTTTTAACAGTTAACATTGCATTGTAATTTTCTTGAAGTTTTACTTCTTAAATTCACTTACGAGATCCAGCCCTGAAGTAATTATTGATTTGCCAAGTTTTGTGAAAAAAAAACATAATTCGTTTAATCCAAACTACATCTTATTGACTTAAATTCAATTCAATAAAACAACAAAATGAATGAAATATAAAATCGGTAGAGATAGTCTATAAGGAAGATATTACACGATATCAAATGTCTCATAAGTGTTGGAGACCGCTTTTATACTAATTCTAGCAAAACGCTCAGTTTCGCGGTTTACAGACGGGTAAGAAAAAAAAACAGCGTAATAGAAAAATAGGGGTTTAACAAGATTTNGTCTTGTTTAACCTTTAATTCAGATTCATGAACGTTCCTACCAACGGAAATAAAGAATCTCACTTGTTCTTAAAATTTGTTCGCAAAAGGTGAATAATATAAAAGAAAATAGCATGAAGCTTTGTTCCCCTTTTGCTCTACCGGAGGCTTAAAAGGGAACGTTTTAATGCTTCAACAATGGTGACGACTGACATTGGGGGTGATCTGTTAAGGGCCACTTAGGGTTCCGGTTATGGCATTCTCNCTAATTAGGGGATAACACCCAAAAATNTTCTAACCCCAANGGTCAAANTCTAACGTCCAAGGACNNTTATGNAGTTCCCCGAATTGT] consensusID : consensus_4205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 735 fasta sequence [TCAGATTCATGAACGTTCCTACCAACGGAAATAAAAATCTCACTTGTTCTTAAAATTTGTTCCCAAAAAGTGAATAATATAAAAAGAAAATAAATGAAGCTTTTCTCTTCTCTACGAGCTAAAGAACGTTTTAATGCTAAAAATGTAAATAAATTGGCGTGTTCTGTTAAGGCACTTGGGTTCGTTATGCATCCCTCTATTGGTATAACCCATAAATTCTCACCCATACCTAATTCTTAGTTCAACGAATGTATAATAAGTTCACGATTGTACAGCTCAACGGAAAGAGGTTAATACATCTGTGTGTTATATCAGTGTGTGTCAGTAACGTGTGCCGAAACGAGATTGAATTCCGTAATGTTAATAGTGAAATATAAAGAAGAGAAATTTGCATGCATGCCCTAAGCTGCATGTGTATCAAGTAGCATATAGAAAAAGAGACAAATTCGGAATGGGAATTCCCTGAGATGAACAACACAATTGTCAAAAGAAAAAAAAAATACTCCCTTTGCCGCTCCAAAGTGTGCGCCTTCTTACAGGTAGAACAGCTTGTCGTTCAACGATTCTGCCGGCATTCGCTTGACCGACTGTCCAACAAGAAACAGCCAACTTGTGTGCGTACTGACA-GCACGCCGGCACACGAATCGTGCCGGTCCAGTTGTAGTACATGTAGCACATCTTGTAGCTCAGCTGTTGCAGAATGTCGGGCGAAAACTTGGAATCGTCCCGCAGCAC] [+] EMBL CNS09O89 [TCAGATTCATGAACGTTCCTACCAACGGAAATAAAAATCTCACTTGTTCTTAAAATTTGTTCCCAAAAAGTGAATAATATAAAAAGAAAATAAATGAAGCTTTTCTCTTCTCTACGAGCTAAAGAACGTTTTAATGCTAAAAATGTAAATAAATTGGCGTGTTCTGTTAAGGCACTTGGGTTCGTTATGCATCCCTCTATTGGTATAACCCATAAATTCTCACCCATACCTAATTCTTAGTTCAACGAATGTATAATAAGTTCACGATTGTACAGCTCAACGGAAAGAGGTTAATACATCTGTGTGTTATATCAGTGTGTGTCAGTAACGTGTGCCGAAACGAGATTGAATTCCGTAATGTTAATAGTGAAATATAAAGAAGAGAAATTTGCATGCATGCCCTAAGCTGCATGTGTATCAAGTAGCATATAGAAAAAGAGACAAATTCGGAATGGGAATTCCCTGAGATGAACAACACAATTGTCAAAAGAAAAAAAAAATACTCCCTTTGCCGCTCCAAAGTGTGCGCCTTCTTACAGGTAGAACAGCTTGTCGTTCAACGATTCTGCCGGCATTCGCTTGACCGACTGTCCAACAAGAAACAGCCAACTTGTGTGCGTACTGACA GCACGCCGGCACACGAATCGTGCCGGTCCAGTTGTAGTACATGTAGCACATCTTGTAGCTCAGCTGTTGCAGAATGTCGGGCGAAAACTTGGAATCGTCCCGCAGCAC] [+] EMBL CNS09DAC [ TTTGTTCCCAAAAAGTGAATAATATAAAAAGAAAATAAATGAAGCTTTTCTCTTCTCTACGAGCTAAAGAACGTTTTAATGCTAAAAATGTAAATAAATTGGCGTGTTCTGTTAAGGCACTTGGGTTCGTTATGCATCCCTCTATTGGTATAACCCATAAATTCTCACCCATACCTAATTCTTAGTTCAACGAATGTATAAAAAGTTCACGATTGTACAGCTCAACGGAAAGAGGTTAATACATCTGTGTGTTATATCAGTGTGTGTCAGTAACGTGTGCCGAAACGAGATTGAATTCCGTAATGTTAATAGTGAAATATAAAGAAGAGAAATTTGCATGCATGCCCTAAGCTGCATGTGTATCAAGTAGCATATAGAAAAAGAGACAAATTCGGAATGGGAATTCCCTGAGATGAACAACACAATTGTCAAAAGAAAAAAAAAATACTCCCTTTGCCGCTCCAAAGTGTGCGCCTTCTTACAGGTAGAACAGCTTGTCGTTCAACGATTCTGCCGGCATTCGCTTGACCGACTGTCCAACAAGATAC GCCAGCCTGTGTGCGTACTGACACGCACGCCGGCACACGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4205#0 CATGCCTGCTTTTGTTTTATTTTTTTTTTCTTATTAACTCTTCTGTTTATTTCATACACG 60 consensus_4205#1 ------------------------------------------------------------ consensus_4205#0 ATTTTCTTTTCTTCTGTTTTTGGTCCACAATTGAGCATCTTCCACAAATTCTTATAACAT 120 consensus_4205#1 ---TCAGATTCATGAACGTT---CCTACCAACGGAAATA----AAAATCTCACTTGTTCT 50 * *** * ** * ** * * ** * ** ** * * consensus_4205#0 CAACATCAGTCTTTGGAATTCAATCTTTGCTTAAGAGTAACAAAAGCTTACCCCCTCCTT 180 consensus_4205#1 TAAAATTTGTTCCCAAAAAGTGAATAATATAAAAAGAAAATAAATGAAGCTTTTCTCTTC 110 ** ** ** ** * * ** ** *** * *** * consensus_4205#0 TCAAAGATGTACAGTTCATAGTTTTAACAGTTAACATTGCATTGTAATTTTCTTGAAGTT 240 consensus_4205#1 TCTACGAGCTAAAGAAC---GTTTTAAT-GCTAAAAATGTAAATAAATTGGCGTG----T 162 ** * ** ** ** * ******* * *** * ** * **** * ** * consensus_4205#0 TTACTTCTTAAATTCACTTACGAGATCCAGCCCTGAAGTAATTATTGATTTGCCAAGTTT 300 consensus_4205#1 TCTGTTAAGGCACTTGGGTTCGTTATGCATCCCTCTATTGGT--ATAACCCATAAATTCT 220 * ** * * * ** ** ** **** * * * * * ** * * consensus_4205#0 TGTGAAAAAAAAACATAATTCGTTTAATCCAAACTACATCTTATTGACTTAAATTCAATT 360 consensus_4205#1 CACCCAT-----ACCTAATTC--TTAGTTCAACGAATGTATAATAAGTTCA----CGATT 269 * ** ****** *** * *** * * * ** * * * *** consensus_4205#0 CAATAAAACAACAAAATGAATGAAATATAAAATCGGTAGAGATAGTCTATAAGGAAGATA 420 consensus_4205#1 GTACAGCTCAACGGAAAGAGGTTAATAC---ATCTGT----GTGTTATATCAG-----TG 317 * * **** ** ** **** *** ** * * *** ** * consensus_4205#0 TTACACGATATCAAATGTCTCATAAGTGTTGGAGACCGCTTTTATACTAATTCTAGCAAA 480 consensus_4205#1 TGTGTCAGTAACGTGTGCCGAAACGAGATTGAATTCCG---TAATGTTAAT---AGTGAA 371 * * ** * ** * * *** * *** * ** **** ** ** consensus_4205#0 ACGCTCAGTTTCGCGGTTTACAGACGGGTAAGAAAAAAAAACAGCGTAATAGAAAAATAG 540 consensus_4205#1 ATATAAAGAAGAGAAATTTGCATGCATGCCCTAAGCTGCATGTGTATCA-AGTAGCATAT 430 * ** * *** ** * * ** * * * * ** * *** consensus_4205#0 GGGTTTAACAAGATTTNGTCTTGTTTAACCTTTAATTCAGATTCATGAACGTTCCTACCA 600 consensus_4205#1 AGA---AAAAGAGACAAATTCGGAATGGGAATTCCCTGAGATGAAC-AACACAATTGTCA 486 * ** * * * * ** * **** * *** * ** consensus_4205#0 ACGGAAATAAAGAAT--CTCACTTGTTCTTAAAATTTGTTCGCAAAAGGTGAATAATATA 658 consensus_4205#1 AAAGAAAAAAAAAATACTCCCTTTGCCGCTCCAAAGTGTGCGCCTTC--TTACAGGTAGA 544 * **** *** *** * *** * ** *** *** * * ** * consensus_4205#0 AAAGAAAATAGCATGAAGCTTTGTTCCCCTTTTGCTCTACCGGAGGCTTAAAAGGGAACG 718 consensus_4205#1 ACAGCTTGTCGTTCAACGATTCTGCCGGCATTCGCTTGACCGACTGTCCAACAAGAAACA 604 * ** * * * * ** * * ** *** **** * ** * * *** consensus_4205#0 TTTTAATGCTTCAACAATGGTGACGACTGACATTGGGG-GTGATCTGTTAAGGGCCACTT 777 consensus_4205#1 GCCAACT--TGTGTGCGTACTGACAGC--ACGCCGGCACACGAATCGTGCCGGTCCAGTT 660 * * * * **** * ** ** ** ** ** *** ** consensus_4205#0 AGGGTTCCGGTTATGGCATTCTCNCTAATTAGGGGATAACACCCAAAAATNTTCTAACCC 837 consensus_4205#1 GTAGTACA---TGTAGCACATCTTGTAGCTCAGCTGTTGCA-----GAATGTCGGG---C 709 ** * * * *** ** * * * ** *** * * consensus_4205#0 CAANGGTCAAANTCTAACGTCCAAGGACNNTTATGNAGTTCCCCGAATTGT 888 consensus_4205#1 GAAAACTTGGAATC----GTCCCGCAGCAC--------------------- 735 ** * * ** **** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||