cluster # 4207

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Anopheles gambiae
cluster # 4207 cluster # 4207 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4207#0 length = 688 sequences # 2

consensus_4207#1 length = 533 sequences # 1

consensusID : consensus_4207#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 688
fasta sequence

                              [CCGGTTTGTTTATGTGAAAAGTTTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTGAGTTCGGGACGATAATTTTGTGTTTGATGTGTAAAATATAAATTCTTCATTCTAGTTAAGCTTTACGCACCCGTCCCTGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCCTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGGTGAACAAGTTTCTCGGGCAGCAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAATGAGCAGACAGCGGCAAGGCCAGAATCGTTGCTGGAAGACCTGGAAGCGGTGAGCCCGGACTCGGACAAAAAGTCCGAAGGAAGTCTCACACCATCTCCACCACCACTGCCGCCTCAACCACCACCGCCGGAAGAGCCGGAAGAGCATGGGGTCGA]

[+] EMBL BM577381             [CCGGTTTGTTTATGTGAAAAGTTTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTGAGTTCGGGACGATAATTTTGTGTTTGATGTGTAAAATATAAATTCTTCATTCTAGTTAAGCTTTACGCACCCGTCCCTGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCCTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGGTGAACAAGTTTCTCGGGCAGCAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAATGAGCAGACAGCGGCAAGGCCAGAATCGTTGCTGGAAGACCTGGAAGCGGTGAGCCCGGACTCGGACAAAAAGTCCGAAGGAAGTCTC                                                                    ]
[+] EMBL BX605767             [                                                                                                TAAATTCTTCATTCTAGTTAAGCTTTACGCACCCGTCCCCGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCTTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGGTGAACAAGTTTCTCGGGCAACAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAATGAGCAGACAGCGGCAAGGCCAGAATCGTTGCTGGAAGACCTGGAAGCGGTGAGCCCGGACTCGGACAAAAAGTCCGAAGGAAGTCTCACACCATCTCCACCACCACTGCCGCCTCAACCACCACCGCCGGAAGAGCCGGAAGAGCATGGGGTCGA]




>consensus_4207#0
CCGGTTTGTTTATGTGAAAAGTTTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTGAG
TTCGGGACGATAATTTTGTGTTTGATGTGTAAAATATAAATTCTTCATTCTAGTTAAGCT
TTACGCACCCGTCCCTGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCG
ATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTT
TGGCCGACGTGGACACGAAGCCCGCCTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGG
TGAACAAGTTTCTCGGGCAGCAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCC
GAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAA
TAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGA
TTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAATGAGCAGA
CAGCGGCAAGGCCAGAATCGTTGCTGGAAGACCTGGAAGCGGTGAGCCCGGACTCGGACA
AAAAGTCCGAAGGAAGTCTCACACCATCTCCACCACCACTGCCGCCTCAACCACCACCGC
CGGAAGAGCCGGAAGAGCATGGGGTCGA

consensusID : consensus_4207#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [CCGGTGAAAAGTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTAAGATAATATAATGCTACCGTTTGTGGGTTGAAAAGGTATTAACCCCAAAATCAACCCCTCGTTTTTGTTAAGCTTTACGCACCCGTCCCCGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCTTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGGTGAACAAGTTTCTCGGGCAACAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAAT]

[+] EMBL BM619160             [CCGGTGAAAAGTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTAAGATAATATAATGCTACCGTTTGTGGGTTGAAAAGGTATTAACCCCAAAATCAACCCCTCGTTTTTGTTAAGCTTTACGCACCCGTCCCCGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCTTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGGTGAACAAGTTTCTCGGGCAACAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAAT]




>consensus_4207#1
CCGGTGAAAAGTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTAAGATAATATAATGC
TACCGTTTGTGGGTTGAAAAGGTATTAACCCCAAAATCAACCCCTCGTTTTTGTTAAGCT
TTACGCACCCGTCCCCGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCG
ATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTT
TGGCCGACGTGGACACGAAGCCCGCTTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGG
TGAACAAGTTTCTCGGGCAACAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCC
GAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAA
TAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGA
TTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4207#0      CCGGTTTGTTTATGTGAAAAGTTTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTGAG 60
consensus_4207#1      ----------CCGGTGAAAAG--TCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTAAG 48
                                   ********  ********************************** **

consensus_4207#0      TT--CGGGACGATAA---TTTTGTGTTTGATGTGTAA-------AATATAAATTCTTCAT 108
consensus_4207#1      ATAATATAATGCTACCGTTTGTGGGTTGAAAAGGTATTAACCCCAAAATCAACCCCTCGT 108
                       *      * * **    ** ** ***  *   ***        ** ** **  * ** *

consensus_4207#0      TCTAGTTAAGCTTTACGCACCCGTCCCTGTGTGTAACAGCCGCCATCATGATCGATGATC 168
consensus_4207#1      TTTTGTTAAGCTTTACGCACCCGTCCCCGTGTGTAACAGCCGCCATCATGATCGATGATC 168
                      * * *********************** ********************************

consensus_4207#0      CGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCC 228
consensus_4207#1      CGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCC 228
                      ************************************************************

consensus_4207#0      GGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCCTATCAGAACCTGCGGCAGCGCG 288
consensus_4207#1      GGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCTTATCAGAACCTGCGGCAGCGCG 288
                      ************************************* **********************

consensus_4207#0      TGGAAGGGACGGTGAACAAGTTTCTCGGGCAGCAGGAATGGTCCGACAACATCCGGTACA 348
consensus_4207#1      TGGAAGGGACGGTGAACAAGTTTCTCGGGCAACAGGAATGGTCCGACAACATCCGGTACA 348
                      ******************************* ****************************

consensus_4207#0      AAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTG 408
consensus_4207#1      AAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTG 408
                      ************************************************************

consensus_4207#0      GCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAA 468
consensus_4207#1      GCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAA 468
                      ************************************************************

consensus_4207#0      AGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACG 528
consensus_4207#1      AGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACG 528
                      ************************************************************

consensus_4207#0      GGAATGAGCAGACAGCGGCAAGGCCAGAATCGTTGCTGGAAGACCTGGAAGCGGTGAGCC 588
consensus_4207#1      GGAAT------------------------------------------------------- 533
                      *****                                                       

consensus_4207#0      CGGACTCGGACAAAAAGTCCGAAGGAAGTCTCACACCATCTCCACCACCACTGCCGCCTC 648
consensus_4207#1      ------------------------------------------------------------
                                                                                  

consensus_4207#0      AACCACCACCGCCGGAAGAGCCGGAAGAGCATGGGGTCGA 688
consensus_4207#1      ----------------------------------------