These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence [CCGGTTTGTTTATGTGAAAAGTTTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTGAGTTCGGGACGATAATTTTGTGTTTGATGTGTAAAATATAAATTCTTCATTCTAGTTAAGCTTTACGCACCCGTCCCTGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCCTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGGTGAACAAGTTTCTCGGGCAGCAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAATGAGCAGACAGCGGCAAGGCCAGAATCGTTGCTGGAAGACCTGGAAGCGGTGAGCCCGGACTCGGACAAAAAGTCCGAAGGAAGTCTCACACCATCTCCACCACCACTGCCGCCTCAACCACCACCGCCGGAAGAGCCGGAAGAGCATGGGGTCGA] [+] EMBL BM577381 [CCGGTTTGTTTATGTGAAAAGTTTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTGAGTTCGGGACGATAATTTTGTGTTTGATGTGTAAAATATAAATTCTTCATTCTAGTTAAGCTTTACGCACCCGTCCCTGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCCTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGGTGAACAAGTTTCTCGGGCAGCAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAATGAGCAGACAGCGGCAAGGCCAGAATCGTTGCTGGAAGACCTGGAAGCGGTGAGCCCGGACTCGGACAAAAAGTCCGAAGGAAGTCTC ] [+] EMBL BX605767 [ TAAATTCTTCATTCTAGTTAAGCTTTACGCACCCGTCCCCGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCTTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGGTGAACAAGTTTCTCGGGCAACAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAATGAGCAGACAGCGGCAAGGCCAGAATCGTTGCTGGAAGACCTGGAAGCGGTGAGCCCGGACTCGGACAAAAAGTCCGAAGGAAGTCTCACACCATCTCCACCACCACTGCCGCCTCAACCACCACCGCCGGAAGAGCCGGAAGAGCATGGGGTCGA] consensusID : consensus_4207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [CCGGTGAAAAGTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTAAGATAATATAATGCTACCGTTTGTGGGTTGAAAAGGTATTAACCCCAAAATCAACCCCTCGTTTTTGTTAAGCTTTACGCACCCGTCCCCGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCTTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGGTGAACAAGTTTCTCGGGCAACAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAAT] [+] EMBL BM619160 [CCGGTGAAAAGTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTAAGATAATATAATGCTACCGTTTGTGGGTTGAAAAGGTATTAACCCCAAAATCAACCCCTCGTTTTTGTTAAGCTTTACGCACCCGTCCCCGTGTGTAACAGCCGCCATCATGATCGATGATCCGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCCGGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCTTATCAGAACCTGCGGCAGCGCGTGGAAGGGACGGTGAACAAGTTTCTCGGGCAACAGGAATGGTCCGACAACATCCGGTACAAAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTGGCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAAAGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACGGGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4207#0 CCGGTTTGTTTATGTGAAAAGTTTCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTGAG 60 consensus_4207#1 ----------CCGGTGAAAAG--TCGTATTTTTCTGCAAAAGCTATTTGTTTTGAGTAAG 48 ******** ********************************** ** consensus_4207#0 TT--CGGGACGATAA---TTTTGTGTTTGATGTGTAA-------AATATAAATTCTTCAT 108 consensus_4207#1 ATAATATAATGCTACCGTTTGTGGGTTGAAAAGGTATTAACCCCAAAATCAACCCCTCGT 108 * * * ** ** ** *** * *** ** ** ** * ** * consensus_4207#0 TCTAGTTAAGCTTTACGCACCCGTCCCTGTGTGTAACAGCCGCCATCATGATCGATGATC 168 consensus_4207#1 TTTTGTTAAGCTTTACGCACCCGTCCCCGTGTGTAACAGCCGCCATCATGATCGATGATC 168 * * *********************** ******************************** consensus_4207#0 CGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCC 228 consensus_4207#1 CGCATTTCATCGATGCCATGGTGCATGAGCTCAAGTCTCAAGGTCTTTTCGATCAGTTCC 228 ************************************************************ consensus_4207#0 GGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCCTATCAGAACCTGCGGCAGCGCG 288 consensus_4207#1 GGAAAGAGTGTTTGGCCGACGTGGACACGAAGCCCGCTTATCAGAACCTGCGGCAGCGCG 288 ************************************* ********************** consensus_4207#0 TGGAAGGGACGGTGAACAAGTTTCTCGGGCAGCAGGAATGGTCCGACAACATCCGGTACA 348 consensus_4207#1 TGGAAGGGACGGTGAACAAGTTTCTCGGGCAACAGGAATGGTCCGACAACATCCGGTACA 348 ******************************* **************************** consensus_4207#0 AAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTG 408 consensus_4207#1 AAAACCAGCTCCGAGAGCAGCTGCGTAAAAACATCATCGAATCGGGATTTTTGGACACTG 408 ************************************************************ consensus_4207#0 GCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAA 468 consensus_4207#1 GCGTCGAGCGAATAGTAGACCAGGTAGTGAACCCCAAAATAGCTACCATTTTCCAGCCAA 468 ************************************************************ consensus_4207#0 AGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACG 528 consensus_4207#1 AGGTGGAAGAGATTGTGTACAACTATCTCGGCATCGAGAAGCCCAAATCATCCGTCAACG 528 ************************************************************ consensus_4207#0 GGAATGAGCAGACAGCGGCAAGGCCAGAATCGTTGCTGGAAGACCTGGAAGCGGTGAGCC 588 consensus_4207#1 GGAAT------------------------------------------------------- 533 ***** consensus_4207#0 CGGACTCGGACAAAAAGTCCGAAGGAAGTCTCACACCATCTCCACCACCACTGCCGCCTC 648 consensus_4207#1 ------------------------------------------------------------ consensus_4207#0 AACCACCACCGCCGGAAGAGCCGGAAGAGCATGGGGTCGA 688 consensus_4207#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||