These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence [CCGTTGCAAGATCGGGCGGAAAAAAAAACCACGGTAAGAGACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGGGTTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATCCTTAATCGGGCGGGTTCGATCCTCCCCGTGTGCTGATGGAGCTCGAGAGCTATGGCAGCTGGAGGAGGATCACGATGCAAGGAGAGGTACCCAATAAAATGCAAATTTCACTCAACCACCAAGCCTGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGTCGTAGCAGCAGCAATCGAAACTTGCTCGACGGCTTATTGGATTAGCATAAAAAATCAGCTGTATTTATTAAACGGCCCCGAGAGTCCGAGAGCCGTTTTGCTGTATCTCGTAACGTCGTCGTGTTGGGTTTTTTTCCTTCTTCGTTTGGTGGCTTCGTGTGTCCAGGTGCGAATCAGTTATCCGGTCGATTGAATACGCAAGGACCTAGCCCCCAAACGGGTCGAGTTTTGGTGTGAAATGTTCGGTGCGCAGGAAAAAAAGCAAGCATTGCTATATCTTTATGGTGCAAGCGAGTCTGCGTGTGCAAAAAAAAATGGNCAAAACCG] [+] EMBL BX623983 [CCGTTGCAAGATCGGGCGGAAAAAAAAACCACGGTAAGAGACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGGGTTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATCCTTAATCGGGCGGGTTCGATCCTCCCCGTGTGCTGATGGAGCTCGAGAGCTATGGCAGCTGGAGGAGGATCACGATGCAAGGAGAGGTACCCAATAAAATGCAAATTTCACTCAACCACCAAGCCTGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGTCGTAGCAGCAGCAATCGAAACTTGCTCGACGGCTTATTGGATTAGCATAAAAAATCAGCTGTATTTATTAAACGGCCCCGAGAGTCCGAGAGCCGTTTTGCT ] [+] EMBL BX626320 [ AGATCGGGCGGAAAAAAAAACCACGGTAAGAGACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGGGTTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATCCTTAATCGGGCGGGTTCGATCCTCCCCGTGTGCTGATGGAGCTCGAGAGCTATGGCAGCTGGAGGAGGATCACGATGCAAGGAGAGGTACCCAATAAAATGCAAATTTCACTCAACCACCAAGCCTGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGTCGTAGCAGCAGCAATCGAAACTTGCTCGACGGCTTATTGGATTAGCATAAAAAATCAGCTGTATTTATTAAACGGCCCCGAGAGTCCGAGAGCCGTTTTGCTGTATCTCGTAACGTCGTCGTGTTGGGTTTTTTTCCTTCTTCGTTTGGTGGCTTCGTGTGTCCAGGTGCGAATCAGTTATCCGGTCGATTGAATACGCAAGGACCTAGCCCCCAAACGGGTCGAGTTTTGGTGTGAAATGTTCGGTGCGCAGGAAAAAAAGCAAGCATTGCTATATCTTTATGGTGCAAGCGAGTCTGCGTGTGCAAAAAAAAATGGNCAAAACCG] consensusID : consensus_4214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [CCAAGAATTGCCGTNCATCAACGTTGCAGATCGGGCGGAAAAAAAAACACGGTAAGAGACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGTGGTTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATTCCTTAATCGGGCGGGTTCGATCCTCCCCGTGTGCTGATTGGAGCTCGAGAGCTATGGCAGCTGGAGCGAGGATCACGACTGCAAGGCAGAGGTACCCAATAAACATGCAAAACTTTCACTCAACCACCAAGCCTGGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGCTCGTAGCAGCAGCCAATCGAAACTTGCCTCGACGGCCTTATCGGACTTAGCACTANCCCACTCACGCCTGCTACTCCTCACTTTAANACACCCGTGCCCCGCAGCAGTCCGAGAGCCGGTTCTTTGCCTGCTATCTCGGTAACGGCTCGNTCGCTGTNGGGGTTNTCNCTCTTCCCTT] [+] EMBL AL930491 [CCAAGAATTGCCGTNCATCAACGTTGCAGATCGGGCGGAAAAAAAAACACGGTAAGAGACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACAAACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGTGGTTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATTCCTTAATCGGGCGGGTTCGATCCTCCCCGTGTGCTGATTGGAGCTCGAGAGCTATGGCAGCTGGAGCGAGGATCACGACTGCAAGGCAGAGGTACCCAATAAACATGCAAAACTTTCACTCAACCACCAAGCCTGGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGCTCGTAGCAGCAGCCAATCGAAACTTGCCTCGACGGCCTTATCGGACTTAGCACTANCCCACTCACGCCTGCTACTCCTCACTTTAANACACCCGTGCCCCGCAGCAGTCCGAGAGCCGGTTCTTTGCCTGCTATCTCGGTAACGGCTCGNTCGCTGTNGGGGTTNTCNCTCTTCCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4214#0 --------------------CCGTTGCAAGATCGGGCGGAAAAAAAAACCACGGTAAGAG 40 consensus_4214#1 CCAAGAATTGCCGTNCATCAACGTTGCA-GATCGGGCGGAAAAAAAAAC-ACGGTAAGAG 58 ******* ******************** ********** consensus_4214#0 ACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACA 100 consensus_4214#1 ACAGCGATTAGGTAACACATCGAACCCGAACGAAGCGTTCGCAATTTACATCGGCAGACA 118 ************************************************************ consensus_4214#0 AACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAG-GG 159 consensus_4214#1 AACATACCGGGGCCTTTTCGGAGGACATAAAACTGTCCGAAACCATATCTCCGTCAGTGG 178 ********************************************************* ** consensus_4214#0 TTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCAT-CCTTAATCGGGC 218 consensus_4214#1 TTGCTTCGCAACAACCTCACAAGCAAAACGTTTTATCATCCGTGCATTCCTTAATCGGGC 238 *********************************************** ************ consensus_4214#0 GGGTTCGATCCTCCCCGTGTGCTGAT-GGAGCTCGAGAGCTATGGCAGCTGGAG-GAGGA 276 consensus_4214#1 GGGTTCGATCCTCCCCGTGTGCTGATTGGAGCTCGAGAGCTATGGCAGCTGGAGCGAGGA 298 ************************** *************************** ***** consensus_4214#0 TCACGA-TGCAAGG-AGAGGTACCCAATAAA-ATGCAAA--TTTCACTCAACCACCAAGC 331 consensus_4214#1 TCACGACTGCAAGGCAGAGGTACCCAATAAACATGCAAAACTTTCACTCAACCACCAAGC 358 ****** ******* **************** ******* ******************* consensus_4214#0 CTGG-ACGGGGCAGACGACAGCAGCAACACAGCAGTCG-TCGTAGCAGCAGC-AATCGAA 388 consensus_4214#1 CTGGGACGGGGCAGACGACAGCAGCAACACAGCAGTCGCTCGTAGCAGCAGCCAATCGAA 418 **** ********************************* ************* ******* consensus_4214#0 ACTTGC-TCGACGGC-TTATTGGA-TTAGCATAAAAAATCAGCTGTATTTATTAAACGGC 445 consensus_4214#1 ACTTGCCTCGACGGCCTTATCGGACTTAGCACTANC--CCACTCACGCCTGCTA------ 470 ****** ******** **** *** ****** * ** * ** consensus_4214#0 CCCGAGAGTCCGAGAGCCGTTTTGCTGTATCTCGTAACGTCGTCGTGTTGGGTTTTTTTC 505 consensus_4214#1 CTCCTCACTTTAANACAC------CCGTGCCCCGCAGCAGTCCGAGAGCCGGTTCTTTGC 524 * * * * * * * * ** * ** * * **** *** * consensus_4214#0 CTTCTTCGTTTGGTGGC--TTCGTGTGTCCAGGTGCGAATCAGTTATCCGGTCGATTGAA 563 consensus_4214#1 CTGCTAT-CTCGGTAACGGCTCGNTCGCTGTNGGGGTTNTCNCTCTTCCCTT-------- 575 ** ** * *** * *** * * * ** * *** * consensus_4214#0 TACGCAAGGACCTAGCCCCCAAACGGGTCGAGTTTTGGTGTGAAATGTTCGGTGCGCAGG 623 consensus_4214#1 ------------------------------------------------------------ consensus_4214#0 AAAAAAAGCAAGCATTGCTATATCTTTATGGTGCAAGCGAGTCTGCGTGTGCAAAAAAAA 683 consensus_4214#1 ------------------------------------------------------------ consensus_4214#0 ATGGNCAAAACCG 696 consensus_4214#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||