These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence [CGACCCACGCGTCCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAGAAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTGAACCCGCCGAAGCCGAAGACGCACCGCATGGGCATTGGGCGAATCGGGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGGCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCAACAGT] [+] EMBL BM613169 [CGACCCACGCGTCCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAGAAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTGAACCCGCCGAAGCCGAAGACGCACCGCATGGGCAT ] [+] EMBL BM595719 [ ccgccaagtCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAGAAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTGAACCCGCCGAAGCCGAAGACGCACCGCATGGGCATTGGGCGAATCGGGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGGCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCAACAGT] consensusID : consensus_4219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CCGCCCACGCGTCCGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGTCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCACAGTACGGACGTGTTGGCCAAAATACCCAAACGGTTTTTAAAACCCTCCCAAGTACGTGGCGTCGATACGGAAGCGT] [+] EMBL BM649040 [CCGCCCACGCGTCCGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGTCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCACAGTACGGACGTGTTGGCCAAAATACCCAAACGGTTTTTAAAACCCTCCCAAGTACGTGGCGTCGATACGGAAGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4219#0 CGACCCACGCGTCCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAG 60 consensus_4219#1 ------------------------------------------------------------ consensus_4219#0 AAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTG 120 consensus_4219#1 ------------------------------------------------------------ consensus_4219#0 AACCCGCCGAAGCCGAAGACGCACCGCATGGGCATTGGGCGAATCGGGCGCAGCTCGAGT 180 consensus_4219#1 --------------------------------CCGCCCACGCGTCCG-CGCAGCTCGAGT 27 * ** ** * ************ consensus_4219#0 GAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGC 240 consensus_4219#1 GAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGC 87 ************************************************************ consensus_4219#0 GAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAAT 300 consensus_4219#1 GAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAAT 147 ************************************************************ consensus_4219#0 CCGGCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACC 360 consensus_4219#1 CCGTCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACC 207 *** ******************************************************** consensus_4219#0 CGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGAC 420 consensus_4219#1 CGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGAC 267 ************************************************************ consensus_4219#0 CACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCC 480 consensus_4219#1 CACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCC 327 ************************************************************ consensus_4219#0 CCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGA 540 consensus_4219#1 CCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGA 387 ************************************************************ consensus_4219#0 TGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTC 600 consensus_4219#1 TGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTC 447 ************************************************************ consensus_4219#0 AATCTGGGCTTTGGACCGGCACCGCAACAGT----------------------------- 631 consensus_4219#1 AATCTGGGCTTTGGACCGGCACCGCA-CAGTACGGACGTGTTGGCCAAAATACCCAAACG 506 ************************** **** consensus_4219#0 -------------------------------------------- consensus_4219#1 GTTTTTAAAACCCTCCCAAGTACGTGGCGTCGATACGGAAGCGT 550 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||