Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4219 cluster # 4219       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4219#0 length = 631 sequences # 2  
consensus_4219#1 length = 550 sequences # 1  

consensusID : consensus_4219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 631
fasta sequence
                              [CGACCCACGCGTCCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAGAAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTGAACCCGCCGAAGCCGAAGACGCACCGCATGGGCATTGGGCGAATCGGGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGGCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCAACAGT]

[+] EMBL BM613169             [CGACCCACGCGTCCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAGAAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTGAACCCGCCGAAGCCGAAGACGCACCGCATGGGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM595719             [    ccgccaagtCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAGAAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTGAACCCGCCGAAGCCGAAGACGCACCGCATGGGCATTGGGCGAATCGGGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGGCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCAACAGT]


>consensus_4219#0 CGACCCACGCGTCCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAG AAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTG AACCCGCCGAAGCCGAAGACGCACCGCATGGGCATTGGGCGAATCGGGCGCAGCTCGAGT GAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGC GAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAAT CCGGCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACC CGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGAC CACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCC CCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGA TGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTC AATCTGGGCTTTGGACCGGCACCGCAACAGT



consensusID : consensus_4219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence
                              [CCGCCCACGCGTCCGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGTCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCACAGTACGGACGTGTTGGCCAAAATACCCAAACGGTTTTTAAAACCCTCCCAAGTACGTGGCGTCGATACGGAAGCGT]

[+] EMBL BM649040             [CCGCCCACGCGTCCGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAATCCGTCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCACAGTACGGACGTGTTGGCCAAAATACCCAAACGGTTTTTAAAACCCTCCCAAGTACGTGGCGTCGATACGGAAGCGT]


>consensus_4219#1 CCGCCCACGCGTCCGCGCAGCTCGAGTGAAAATCCGCGCGCCACTGCCCGCCGCTACAAT CTGATGGAGATTGGGCGCAGCTTCAGCGAGATGAACGACGACGACGATTCGTTCGCGATC AGCGAGTGCAACAACAGCTGCCCGAATCCGTCCTCGCTCAACACGAGCTCGAGCATTAAC GAGCATGGAAGCGTGAGTAATCTCACCCGCTCCGTGCCAGTCAGCCCGATACCGCGCACG TCGAGCAAGCTCAGCATTCAGCAGGACCACCCGTCGCAACACCAGCTCCACCAGCAGCAG CAACCGCTGCACCAGCAGCAGTCGTCCCCGAGGCGGCGCAGCACGATGTTGGTGAAGGAC AGCTCGCTGCAGTCCGACTCGAGCCGATGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGC AAACCGGACCCGGAGAAGATACTGCTCAATCTGGGCTTTGGACCGGCACCGCACAGTACG GACGTGTTGGCCAAAATACCCAAACGGTTTTTAAAACCCTCCCAAGTACGTGGCGTCGAT ACGGAAGCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4219#0      CGACCCACGCGTCCGGACGAGCTCATCCCGGGCATGATCAGCGAGGAGGACGAGGAGGAG 60
consensus_4219#1      ------------------------------------------------------------
                                                                                  

consensus_4219#0      AAGGAAAACATACTCGACGGTGCGTCCGTCCTGCCGGGCTACGGGTACGATGCGTACCTG 120
consensus_4219#1      ------------------------------------------------------------
                                                                                  

consensus_4219#0      AACCCGCCGAAGCCGAAGACGCACCGCATGGGCATTGGGCGAATCGGGCGCAGCTCGAGT 180
consensus_4219#1      --------------------------------CCGCCCACGCGTCCG-CGCAGCTCGAGT 27
                                                      *      **  ** * ************

consensus_4219#0      GAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGC 240
consensus_4219#1      GAAAATCCGCGCGCCACTGCCCGCCGCTACAATCTGATGGAGATTGGGCGCAGCTTCAGC 87
                      ************************************************************

consensus_4219#0      GAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAAT 300
consensus_4219#1      GAGATGAACGACGACGACGATTCGTTCGCGATCAGCGAGTGCAACAACAGCTGCCCGAAT 147
                      ************************************************************

consensus_4219#0      CCGGCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACC 360
consensus_4219#1      CCGTCCTCGCTCAACACGAGCTCGAGCATTAACGAGCATGGAAGCGTGAGTAATCTCACC 207
                      *** ********************************************************

consensus_4219#0      CGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGAC 420
consensus_4219#1      CGCTCCGTGCCAGTCAGCCCGATACCGCGCACGTCGAGCAAGCTCAGCATTCAGCAGGAC 267
                      ************************************************************

consensus_4219#0      CACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCC 480
consensus_4219#1      CACCCGTCGCAACACCAGCTCCACCAGCAGCAGCAACCGCTGCACCAGCAGCAGTCGTCC 327
                      ************************************************************

consensus_4219#0      CCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGA 540
consensus_4219#1      CCGAGGCGGCGCAGCACGATGTTGGTGAAGGACAGCTCGCTGCAGTCCGACTCGAGCCGA 387
                      ************************************************************

consensus_4219#0      TGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTC 600
consensus_4219#1      TGCTCCAGCGTGGAGAGTTTGCTGAACGCGCGCAAACCGGACCCGGAGAAGATACTGCTC 447
                      ************************************************************

consensus_4219#0      AATCTGGGCTTTGGACCGGCACCGCAACAGT----------------------------- 631
consensus_4219#1      AATCTGGGCTTTGGACCGGCACCGCA-CAGTACGGACGTGTTGGCCAAAATACCCAAACG 506
                      ************************** ****                             

consensus_4219#0      --------------------------------------------
consensus_4219#1      GTTTTTAAAACCCTCCCAAGTACGTGGCGTCGATACGGAAGCGT 550
                                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)