These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [AGGAACAGTAAAATGAAACAGACTGTGTCCGGTGACAAATTCACATACTCTGGTTAAAAAAACATAATCATTTAAAACTGCCATGCTTTCTTCGACAATGATTTCTGTTTAGTTAATTGTATGCCCCTCGAACGAGCGCAGTGAAAACGGGACGGGGCTTTATTTTGTTTTATTTAGTTTTGTATCCAAATTTAATACAACATTAATTCACACACCTAAACGCGCAGTTGTGATTTCCGTCCGCGATAAAAAGGAAAAAAGTGCAGCGCGAAACAAACAAAAAAAAAAAAAAAGACAAAGGAACGTAAAAGTTGGTTGCAATATGCTGCGCAGTGACAAAACGGGGCATTAGAAGTAAGGGCGGATGTAAACAGTTAGGAAAAACAAAATTACCTTCGTACACCCATCCCAGCAGTGATGGCGGTTTGGTTGGGAATATTTTTATGTTGTTAAATTTGCCATTGGCGTTTGATTTTTCTTTTTGGTGAAAACTTTTAAAAAATTACAGAATCTCAGTAATAACGTTTGAAATTAAGTGGAAAGACTGCACGGTAGTATGAAATGAAACATTTGTGAAGAGAGGATACGCGTTAATTCANGGTGAAAAAGAAAAGTTATTCTCT] [+] EMBL BX622088 [AGGAACAGTAAAATGAAACAGACTGTGTCCGGTGACAAATTCACATACTCTGGTTAAAAAAACATAATCATTTAAAACTGCCATGCTTTCTTCGACAATGATTTCTGTTTAGTTAATTGTATGCCCCTCGAACGAGCGCAGTGAAAACGGGACGGGGCTTTATTTTGTTTTATTTAGTTTTGTATCCAAATTTAATACAACATTAATTCACACACCTAAACGCGCAGTTGTGATTTCCGTCCGCGATAAAAAGGAAAAAAGTGCAGCGCGAAACAAACAAAAAAAAAAAAAAAGACAAAGGAACGTAAAAGTTGGTTGCAATATGCTGCGCAGTGACAAAACGGGGCATTAGAAGTAAGGGCGGATGTAAACAGTTAGGAAAAACAAAATTACCTTCGTACACCCATCCCAGCAGTGATGGCGGTTTGGTTGGGAATATTTTTATGTTGTTAAATTTGCCATTGGCGTTTGATTTTTCTTTTTGGTGAAAACTTTTAAAAAATTACAGAATCTCAGTAATAACGTTTGAAATTAAGTGGAAAGACTGCACGGTAGTATGAAATGAAACATTTGTGAAGAGAGGATACGCGTTAATTCANGGTGAAAAAGAAAAGTTATTCTCT] consensusID : consensus_4220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 591 fasta sequence [CCGCCCACGCGTCCGGTGAAGTAAACTGTCCGGTGACAAACCCACATACTCTGGTTGAAAAAAAAAAAACATAATCATTTAAACTGCCATGCTTTCTTCGACAATGATTTCTGTTTAGTTAATTGTATGCCCCTCGAACGAGTGAAAACGGGACGGGGCTTTATTTTGTTTTATTTAGTTTTGTATTCAAATTTAATGCAACATTAATTCACACACCTAAACGCGCAGTTGTGATTTCCGTCCGCGATAAACAGGAAAAAAGTGGAGCGCGAAACAAACAAAAAAAGACAAAGGAACGTAAAAGTTGGTTGCAATATGCTGTGCAGTGACAAAACGGGGCATTAGAAGTAAGGGCGGATGTAAACAGTTAGGAAAAACAAAATTACTTTCGAACACGCATCCCAGCAGTGATGGCGGTTTGGTTGAGAATATTTTTATGTTGTTAAATTTGCCATTGGCGTTTGATTTTTCTTTTTTGGTGAAAACTTTTAAAAAATTACAGAATCTCAGTAATAACGTTTGAAATTAAGTGGAAAGACTGCACGGTAGTATGAAATGAAACATTTGTGAAGAGAGGATACGCGTTAATTC] [+] EMBL BM632771 [CCGCCCACGCGTCCGGTGAAGTAAACTGTCCGGTGACAAACCCACATACTCTGGTTGAAAAAAAAAAAACATAATCATTTAAACTGCCATGCTTTCTTCGACAATGATTTCTGTTTAGTTAATTGTATGCCCCTCGAACGAGTGAAAACGGGACGGGGCTTTATTTTGTTTTATTTAGTTTTGTATTCAAATTTAATGCAACATTAATTCACACACCTAAACGCGCAGTTGTGATTTCCGTCCGCGATAAACAGGAAAAAAGTGGAGCGCGAAACAAACAAAAAAAGACAAAGGAACGTAAAAGTTGGTTGCAATATGCTGTGCAGTGACAAAACGGGGCATTAGAAGTAAGGGCGGATGTAAACAGTTAGGAAAAACAAAATTACTTTCGAACACGCATCCCAGCAGTGATGGCGGTTTGGTTGAGAATATTTTTATGTTGTTAAATTTGCCATTGGCGTTTGATTTTTCTTTTTTGGTGAAAACTTTTAAAAAATTACAGAATCTCAGTAATAACGTTTGAAATTAAGTGGAAAGACTGCACGGTAGTAT ] [+] EMBL BM648126 [ ccgGTAAACTGTCCGGTGACAAACCCACATACTCTGGTTGAAAAAAAAAAAACATAATCATTTAAACTGCCATGCTTTCTTCGACAATGATTTCTGTTTAGTTAATTGTATGCCCCTCGAACGAGTGAAAACGGGACGGGGCTTTATTTTGTTTTATTTAGTTTTGTATTCAAATTTAATGCAACATTAATTCACACACCTAAACGCGCAGTTGTGATTTCCGTCCGCGATAAACAGGAAAAAAGTGGAGCGCGAAACAAACAAAAAAAGACAAAGGAACGTAAAAGTTGGTTGCAATATGCTGTGCAGTGACAAAACGGGGCATTAGAAGTAAGGGCGGATGTAAACAGTTAGGAAAAACAAAATTACTTTCGAACACGCATCCCAGCAGTGATGGCGGTTTGGTTGAGAATATTTTTATGTTGTTAAATTTGCCATTGGCGTTTGATTTTTCTTTTTTGGTGAAAACTTTTAAAAAATTACAGAATCTCAGTAATAACGTTTGAAATTAAGTGGAAAGACTGCACGGTAGTATGAAATGAAACATTTGTGAAGAGAGGATACGCGTTAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4220#0 --AGGAACA-GTAAAATGAAACAGACTGTGTCCGGTGACAAATTCACATACTCTGGTT-- 55 consensus_4220#1 CCGCCCACGCGTCCGGTGAAGTAAACTGT--CCGGTGACAAACCCACATACTCTGGTTGA 58 ** ** **** * ***** *********** ************** consensus_4220#0 ----AAAAAAACATAATCATTTAAAACTGCCATGCTTTCTTCGACAATGATTTCTGTTTA 111 consensus_4220#1 AAAAAAAAAAACATAATCATTTAAA-CTGCCATGCTTTCTTCGACAATGATTTCTGTTTA 117 ********************* ********************************** consensus_4220#0 GTTAATTGTATGCCCCTCGAACGAGCGCAGTGAAAACGGGACGGGGCTTTATTTTGTTTT 171 consensus_4220#1 GTTAATTGTATGCCCCTCGAACGA-----GTGAAAACGGGACGGGGCTTTATTTTGTTTT 172 ************************ ******************************* consensus_4220#0 ATTTAGTTTTGTATCCAAATTTAATACAACATTAATTCACACACCTAAACGCGCAGTTGT 231 consensus_4220#1 ATTTAGTTTTGTATTCAAATTTAATGCAACATTAATTCACACACCTAAACGCGCAGTTGT 232 ************** ********** ********************************** consensus_4220#0 GATTTCCGTCCGCGATAAAAAGGAAAAAAGTGCAGCGCGAAACAAACAAAAAAAAAAAAA 291 consensus_4220#1 GATTTCCGTCCGCGATAAACAGGAAAAAAGTGGAGCGCGAAACAAACAAAAA-------- 284 ******************* ************ ******************* consensus_4220#0 AAGACAAAGGAACGTAAAAGTTGGTTGCAATATGCTGCGCAGTGACAAAACGGGGCATTA 351 consensus_4220#1 AAGACAAAGGAACGTAAAAGTTGGTTGCAATATGCTGTGCAGTGACAAAACGGGGCATTA 344 ************************************* ********************** consensus_4220#0 GAAGTAAGGGCGGATGTAAACAGTTAGGAAAAACAAAATTACCTTCGTACACCCATCCCA 411 consensus_4220#1 GAAGTAAGGGCGGATGTAAACAGTTAGGAAAAACAAAATTACTTTCGAACACGCATCCCA 404 ****************************************** **** **** ******* consensus_4220#0 GCAGTGATGGCGGTTTGGTTGGGAATATTTTTATGTTGTTAAATTTGCCATTGGCGTTTG 471 consensus_4220#1 GCAGTGATGGCGGTTTGGTTGAGAATATTTTTATGTTGTTAAATTTGCCATTGGCGTTTG 464 ********************* ************************************** consensus_4220#0 ATTTTTCTTTTT-GGTGAAAACTTTTAAAAAATTACAGAATCTCAGTAATAACGTTTGAA 530 consensus_4220#1 ATTTTTCTTTTTTGGTGAAAACTTTTAAAAAATTACAGAATCTCAGTAATAACGTTTGAA 524 ************ *********************************************** consensus_4220#0 ATTAAGTGGAAAGACTGCACGGTAGTATGAAATGAAACATTTGTGAAGAGAGGATACGCG 590 consensus_4220#1 ATTAAGTGGAAAGACTGCACGGTAGTATGAAATGAAACATTTGTGAAGAGAGGATACGCG 584 ************************************************************ consensus_4220#0 TTAATTCANGGTGAAAAAGAAAAGTTATTCTCT 623 consensus_4220#1 TTAATTC-------------------------- 591 ******* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||