These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1313 fasta sequence [AAGAATTAATGACTAAGCGACCGTGTGTTAGGTGTTGCATTTTAGCGTGGTAAGGAAGCTAACATTTCCTATGCGAGGAACGAAACAAAACACACATACAAAATAAGTGGAAGCGAGCGCGCGCACACCATCAACCTACTTAAAATGAGGGGGCGGAAACAAAGTTTTTGAAGGGAAATGATGATTTTTTTGCATTATTGAGACACTTTTTTATCTTTTTCTTTTTCGGTAATGATCTGTTTTGGAAACGACTTTTTCGTATTATCCTTCTTTTTTTATTTCTTTGTTTCTTTTGACAAAAAATTCCATCTTTTTTTTGTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTATACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAATAACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGAGAGAGACCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCATAACAGCATAAAACAATCGATAAACGGAGATGATACACAAAACAAACACACAACGAAAGCTGAACTATACTATTTTGTACACACTATTATGTTTTAAGTACTGTGTCTGATCAATGTTTCCGCGCATCCAGGGGAAAATCAGAATTGCGTCGTGGGAGTGCGGGGTAAAACACGCAATTTCGTAGAGCAGCAGCAGCAGCAGTAGCAGGAACGGTGCATTTATATATTACGTGAAACACAAGATTTCTGCCACCACCACCACCACCACGTTGGTTTTTGTGGGGTGCGTTTATTTTTCCACTAGTTTTTCATTTGTTGTTGATAATGTAAACCGTTAACACACACTGCTTTGTCGCGTCGCTGCTCGGTGCGTGCACGGTGCCCTAGGTTAGTTATGCTTACTACTCTATTATAAGGACCAAGAAATGATTATGAATAAAAGAAAAAAAGATGAATTCCTACACGAATTAACCGACTCTCGTCATCGTCATCATATGTAAAATGGTTTCCCGATAAAGTGTAGTGTTCGCTTGTATAGAAACGCATATTTGTGTACAGTACGCGTCGACCCCCCTACAAATGGTCCAGAAAGAGCCTTCTTTATGCGCACAGGTGCCGATAATAGTAGCGTCTCTCTGTATGCTGTATGTGGTTTCAACTTAGGGAAAGTCGAAGAATACGCTTGCTTGATAATAGCATGTTAGAAAACAATCTTGCGTCGACCGNTTACGCTTTAAATATGTAATCGTGTTTACAGGACGTAATCCCGNTTATATC] [+] EMBL BX625577 [AAGAATTAATGACTAAGCGACCGTGTGTTAGGTGTTGCATTTTAGCGTGGTAAGGAAGCTAACATTTCCTATGCGAGGAACGAAACAAAACACACATACAAAATAAGTGGAAGCGAGCGCGCGCACACCATCAACCTACTTAAAATGAGGGGGCGGAAACAAAGTTTTTGAAGGGAAATGATGATTTTTTTGCATTATTGAGACACTTTTTTATCTTTTTCTTTTTCGGTAATGATCTGTTTTGGAAACGACTTTTTCGTATTATCCTTCTTTTTTTATTTCTTTGTTTCTTTTGACAAAAAATTCCATCTTTTTTTTGTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTATACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAATAACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGAGAGAGACCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCATAACAGCATAAAACAATCGATAAACGGAGATGATACACAAAACAAACACACAACGAAAGCTGAACTATACTATTTTGTACACACTATTATGTTTTAAGTACTGTGTCTGATCAATGTTTCCGCGCATCCAGGGGAAAATCAGAATTGCGTCGTGGGAGTG ] [+] EMBL BX623806 [ AACTATACTATTTTGTACACACTATTATGNTTTAAGTACTGTGTCTGATCAATGTTTCCGCGCATCCAGGGGANAATCANAATTGCGTCGTGGGAGTGCGGGGTAAAACACGCAATTTCGTAGAGCAGCAGCAGCAGCAGTAGCAGGAACGGTGCATTTATATATTACGTGAAACACAAGATTTCTGCCACCACCACCACCACCACGTTGGTTTTTGTGGGGTGCGTTTATTTTTCCACTAGTTTTTCATTTGTTGTTGATAATGTAAACCGTTAACACACACTGCTTTGTCGCGTCGCTGCTCGGTGCGTGCACGGTGCCCTAGGTTAGTTATGCTTACTACTCTATTATAAGGACCAAGAAATGATTATGAATAAAAGAAAAAAAGATGAATTCCTACACGAATTAACCGACTCTCGTCATCGTCATCATATGTAAAATGGTTTCCCGATAAAGTGTAGTGTTCGCTTGTATAGAAACGCATATTTGTGTACAGTACGCGTCGACCCCCCTACAAATGGTCCAGAAAGAGCCTTCTTTATGCGCACAGGTGCCGATAATAGTAGCGTCTCTCTGTATGCTGTATGTGGTTTCAACTTAGGGAAAGTCGAAGAATACGCTTGCTTGATAATAGCATGTTAGAAAACAATCTTGCGTCGACCGNTTACGCTTTAAATATGTAATCGTGTTTACAGGACGTAATCCCGNTTATATC] consensusID : consensus_4224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CCGCGGACGCGTGGGAACAAAGTTTTTGAAGGGAAATGAAGTTTTTTTTTGCATTATTGAGACACTTTTTTTTCTTTTTCTTTTTCGGTAATGATCTGTTTTCGAAACGACTTTTTCGTATTATGCTTCTTTTCTATTTCTTTGTTTCTTTTGACAAAAAATTCCATCTTTTTTTTTGTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTATACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAATAACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGAGAGAGAGACCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCATAACAGCATAAAACAATCGATTAATGGAACTGATCCACAAAACAAACACACAACGAAAGCTGAACTACTATACTATTTTGTACACACTATTAAGTTTTAAGTACTGTGTCTGATCAATGTTTCCGCGCATCCAGGGGAAAGGCAAATCAGAATTGCGTCGTGGGAGTGGGGGGGTAAATCACCCAATTTCGTAGAGCAGCAGCAGCAGCAGCAGCAGGAACGGTGC] [+] EMBL BM594969 [CCGCGGACGCGTGGGAACAAAGTTTTTGAAGGGAAATGAAGTTTTTTTTTGCATTATTGAGACACTTTTTTTTCTTTTTCTTTTTCGGTAATGATCTGTTTTCGAAACGACTTTTTCGTATTATGCTTCTTTTCTATTTCTTTGTTTCTTTTGACAAAAAATTCCATCTTTTTTTTTGTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTATACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAATAACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGAGAGAGAGACCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCATAACAGCATAAAACAATCGATTAATGGAACTGATCCACAAAACAAACACACAACGAAAGCTGAACTACTATACTATTTTGTACACACTATTAAGTTTTAAGTACTGTGTCTGATCAATGTTTCCGCGCATCCAGGGGAAAGGCAAATCAGAATTGCGTCGTGGGAGTGGGGGGGTAAATCACCCAATTTCGTAGAGCAGCAGCAGCAGCAGCAGCAGGAACGGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4224#0 AAGAATTAATGACTAAGCGACCGTGTGTTAGGTGTTGCATTTTAGCGTGGTAAGGAAGCT 60 consensus_4224#1 ------------------------------------------------------------ consensus_4224#0 AACATTTCCTATGCGAGGAACGAAACAAAACACACATACAAAATAAGTGGAAGCGAGCGC 120 consensus_4224#1 ------------------------------------------------------------ consensus_4224#0 GCGCACACCATCAACCTACTTAAAATGAGGGGGCGGAAACAAAGTTTTTGAAGGGAAATG 180 consensus_4224#1 ----------------------CCGCGGACGCGTGGGAACAAAGTTTTTGAAGGGAAATG 38 * * * ** *********************** consensus_4224#0 ATGATTTTTTT-GCATTATTGAGACACTTTTTTATCTTTTTCTTTTTCGGTAATGATCTG 239 consensus_4224#1 AAGTTTTTTTTTGCATTATTGAGACACTTTTTTTTCTTTTTCTTTTTCGGTAATGATCTG 98 * * ******* ********************* ************************** consensus_4224#0 TTTTGGAAACGACTTTTTCGTATTATCCTTCTTTTTTTATTTCTTTGTTTCTTTTGACAA 299 consensus_4224#1 TTTTCGAAACGACTTTTTCGTATTATGCTTCTTTTCT-ATTTCTTTGTTTCTTTTGACAA 157 **** ********************* ******** * ********************** consensus_4224#0 AAAATTCCATCTTTTTTTT-GTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTAT 358 consensus_4224#1 AAAATTCCATCTTTTTTTTTGTTAATCTAGTCTTAAATAAGAGAATTTATATTAATTTAT 217 ******************* **************************************** consensus_4224#0 ACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAAT 418 consensus_4224#1 ACGATCATAACAAAAACGAACACCAAAACCAAATTGTCAGCACACAAACAGCAACGAAAT 277 ************************************************************ consensus_4224#0 AACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGA 478 consensus_4224#1 AACGCGAAAGTAGCAGCCAGCATTTCAACACACAGAGCCTTTAGGAAGAATAGAGTGAGA 337 ************************************************************ consensus_4224#0 GAGAGA--CCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCA 536 consensus_4224#1 GAGAGAGACCCTAAACTATTTATAGTTGTCCAATTTTTAGATATCAACTAGAAGAGAGCA 397 ****** **************************************************** consensus_4224#0 TAACAGCATAAAACAATCGATAAACGGAGATGATACACAAAACAAACACACAACGAAAGC 596 consensus_4224#1 TAACAGCATAAAACAATCGATTAATGGAACTGATCCACAAAACAAACACACAACGAAAGC 457 ********************* ** *** **** ************************* consensus_4224#0 TGAACTA---TACTATTTTGTACACACTATTATGTTTTAAGTACTGTGTCTGATCAATGT 653 consensus_4224#1 TGAACTACTATACTATTTTGTACACACTATTAAGTTTTAAGTACTGTGTCTGATCAATGT 517 ******* ********************** *************************** consensus_4224#0 TTCCGCGCATCCAGGGGAAA-----ATCAGAATTGCGTCGTGGGAGTGCGGGG-TAAAAC 707 consensus_4224#1 TTCCGCGCATCCAGGGGAAAGGCAAATCAGAATTGCGTCGTGGGAGTGGGGGGGTAAATC 577 ******************** *********************** **** **** * consensus_4224#0 ACGCAATTTCGTAGAGCAGCAGCAGCAGCAGTAGCAGGAACGGTGCATTTATATATTACG 767 consensus_4224#1 ACCCAATTTCGTAGAGCAGCAGCAGCAGCAGCAGCAGGAACGGTGC-------------- 623 ** **************************** ************** consensus_4224#0 TGAAACACAAGATTTCTGCCACCACCACCACCACCACGTTGGTTTTTGTGGGGTGCGTTT 827 consensus_4224#1 ------------------------------------------------------------ consensus_4224#0 ATTTTTCCACTAGTTTTTCATTTGTTGTTGATAATGTAAACCGTTAACACACACTGCTTT 887 consensus_4224#1 ------------------------------------------------------------ consensus_4224#0 GTCGCGTCGCTGCTCGGTGCGTGCACGGTGCCCTAGGTTAGTTATGCTTACTACTCTATT 947 consensus_4224#1 ------------------------------------------------------------ consensus_4224#0 ATAAGGACCAAGAAATGATTATGAATAAAAGAAAAAAAGATGAATTCCTACACGAATTAA 1007 consensus_4224#1 ------------------------------------------------------------ consensus_4224#0 CCGACTCTCGTCATCGTCATCATATGTAAAATGGTTTCCCGATAAAGTGTAGTGTTCGCT 1067 consensus_4224#1 ------------------------------------------------------------ consensus_4224#0 TGTATAGAAACGCATATTTGTGTACAGTACGCGTCGACCCCCCTACAAATGGTCCAGAAA 1127 consensus_4224#1 ------------------------------------------------------------ consensus_4224#0 GAGCCTTCTTTATGCGCACAGGTGCCGATAATAGTAGCGTCTCTCTGTATGCTGTATGTG 1187 consensus_4224#1 ------------------------------------------------------------ consensus_4224#0 GTTTCAACTTAGGGAAAGTCGAAGAATACGCTTGCTTGATAATAGCATGTTAGAAAACAA 1247 consensus_4224#1 ------------------------------------------------------------ consensus_4224#0 TCTTGCGTCGACCGNTTACGCTTTAAATATGTAATCGTGTTTACAGGACGTAATCCCGNT 1307 consensus_4224#1 ------------------------------------------------------------ consensus_4224#0 TATATC 1313 consensus_4224#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||