cluster # 4228

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Anopheles gambiae
cluster # 4228 cluster # 4228 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4228#0 length = 818 sequences # 1

consensus_4228#1 length = 691 sequences # 2

consensusID : consensus_4228#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 818
fasta sequence

                              [GCAGATCGCCACGANNNTGGCTATTGGACGTGTTTAGTCAATCCAACCTGGGACCTGCATATGGCATCGGTCATATCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGCTGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGGGACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAACATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAATGCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGAGAAAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATCGAGGTCGAGCAGGACGGAGATGGAACGGTTTACCGGCTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAAGTCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCAAATGAAACCGTCCAGTGCTGGAGAAAGTTCAACCGTCGCTATCGACTTCTTACGTACCGGAGGACGAACCGCCGTCAAGCGTGGCCGAGGCCGCCACGGAAGCAGATCAAAGTGGAACCGGACACAATCGGTTATAGACGGGGAATTCCAATCGTCNAAGACACAGACACGCAAAGACACCAAAAGTTTTCACCAAANGGCATTGGGGACCGGAAGGCAACNGANAGCGANCCGTTNCCCCACTTGGCGGAATTTCCGGAACCACNNGGGTTGGGCAAACGAGAT]

[+] EMBL BX467271             [GCAGATCGCCACGANNNTGGCTATTGGACGTGTTTAGTCAATCCAACCTGGGACCTGCATATGGCATCGGTCATATCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGCTGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGGGACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAACATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAATGCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGAGAAAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATCGAGGTCGAGCAGGACGGAGATGGAACGGTTTACCGGCTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAAGTCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCAAATGAAACCGTCCAGTGCTGGAGAAAGTTCAACCGTCGCTATCGACTTCTTACGTACCGGAGGACGAACCGCCGTCAAGCGTGGCCGAGGCCGCCACGGAAGCAGATCAAAGTGGAACCGGACACAATCGGTTATAGACGGGGAATTCCAATCGTCNAAGACACAGACACGCAAAGACACCAAAAGTTTTCACCAAANGGCATTGGGGACCGGAAGGCAACNGANAGCGANCCGTTNCCCCACTTGGCGGAATTTCCGGAACCACNNGGGTTGGGCAAACGAGAT]




>consensus_4228#0
GCAGATCGCCACGANNNTGGCTATTGGACGTGTTTAGTCAATCCAACCTGGGACCTGCAT
ATGGCATCGGTCATATCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCAC
ATTTGTATGGATTGCTGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAA
GCCCTCCACGATCGGGACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATG
GGAGAGCTGAAAAACATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATG
AAACAGATTCCCAATGCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGC
TCGGCACTTGAGAGAAAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATCGAG
GTCGAGCAGGACGGAGATGGAACGGTTTACCGGCTGGATGCATTTGAAAACCACGAACAG
ACGGACCGGCCCGAAGTCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCAAATGAAA
CCGTCCAGTGCTGGAGAAAGTTCAACCGTCGCTATCGACTTCTTACGTACCGGAGGACGA
ACCGCCGTCAAGCGTGGCCGAGGCCGCCACGGAAGCAGATCAAAGTGGAACCGGACACAA
TCGGTTATAGACGGGGAATTCCAATCGTCNAAGACACAGACACGCAAAGACACCAAAAGT
TTTCACCAAANGGCATTGGGGACCGGAAGGCAACNGANAGCGANCCGTTNCCCCACTTGG
CGGAATTTCCGGAACCACNNGGGTTGGGCAAACGAGAT

consensusID : consensus_4228#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 691
fasta sequence

                              [CCGGCAGCCCGAAAATGAGTAGCGAAAGGGATTGCGCCCTTTGCCTAACCAGCGAATCCAAATGGCTATTGGACGTGTTTAGTGAATCCAACCGGGACCTGCATATGGCATCGGTCATATCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGCTGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGGGACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAACATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAATGCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGACAAAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATTGAGGTCGAGCAGGACGGAGATGGAACGGTTTACCGACTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAATCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCCAAATGAAACCGTCCAGTGGCTGGGGAAAGTTCAACCGTCGCTATCGACTTCTTTCGCACCGGAGGACGAACCG-CCCCGTCAAGCGTGGCCGAGGCCGGCCGCGGAAGCAGATCAA]

[+] EMBL BM582928             [CCGGCAGCCCGAAAATGAGTAGCGAAAGGGATTGCGCCCTTTGCCTAACCAGCGAATCCAAATGGCTATTGGACGTGTTTAGTGAATCCAACCGGGACCTGCATATGGCATCGGTCATATCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGCTGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGGGACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAACATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAATGCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGACAAAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATTGAGGTCGAGCAGGACGGAGATGGAACGGTTTACCGACTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAATCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCCAAATGAAACCGTCCAGTGGCTGGGGAAAGTTCAACCGTCGCTATCGACTTCTTTCGCACCGGAGGACGAACCG CCCCGTCAAGCGTGGCCGAGGCCGGCCGCGGAAGCAGA    ]
[+] EMBL BM575585             [       CCGGAAAATGAGTAGCGAAAGGGATTGCGCCCTTTGCCTAACCAGCGAATCCAAATGGCTATTGGACGTGTTTAGTGAATCCAACCGGGACCTACATATGGCATCGGTCATATCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGCTGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGGGACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAACATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAATGCTTCGTACGATGGAAGCGATGAGCAGGAAAGCCCCAGCAGGGGCTCGGCAATTGAGAGAAATAAGAAGTCAAACGATCAGGAGTTTAGCCTTTTCGAAATCGAGGTCGAGCAGGACGGAGATGGAACGGTTTACCGGCTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAATCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCCAAATGAAACCGTCCAGTGGCTGGGGAAAGTTCAACCGTCGCTATCGACTTC TTCGTGCCGGAGGACGAACCGCCCCCGTCAAGCGTGGCCGAGGCCGGCCACGGAAGCAGATCAA]




>consensus_4228#1
CCGGCAGCCCGAAAATGAGTAGCGAAAGGGATTGCGCCCTTTGCCTAACCAGCGAATCCA
AATGGCTATTGGACGTGTTTAGTGAATCCAACCGGGACCTGCATATGGCATCGGTCATAT
CGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGCT
GGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGGG
ACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAACA
TTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAATG
CTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGACAA
AGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATTGAGGTCGAGCAGGACGGAG
ATGGAACGGTTTACCGACTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAAT
CAGAAACCCGCAAACAGCCTGTTATATTGAACGGCCAAATGAAACCGTCCAGTGGCTGGG
GAAAGTTCAACCGTCGCTATCGACTTCTTTCGCACCGGAGGACGAACCGCCCCGTCAAGC
GTGGCCGAGGCCGGCCGCGGAAGCAGATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4228#0      -------------------------------------------GCAGATCGCC--ACGAN 15
consensus_4228#1      CCGGCAGCCCGAAAATGAGTAGCGAAAGGGATTGCGCCCTTTGCCTAACCAGCGAATCCA 60
                                                                  *  * *  *  *    

consensus_4228#0      NNTGGCTATTGGACGTGTTTAGTCAATCCAACCTGGGACCTGCATATGGCATCGGTCATA 75
consensus_4228#1      AATGGCTATTGGACGTGTTTAGTGAATCCAACC-GGGACCTGCATATGGCATCGGTCATA 119
                        ********************* ********* **************************

consensus_4228#0      TCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGC 135
consensus_4228#1      TCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGC 179
                      ************************************************************

consensus_4228#0      TGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGG 195
consensus_4228#1      TGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGG 239
                      ************************************************************

consensus_4228#0      GACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAAC 255
consensus_4228#1      GACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAAC 299
                      ************************************************************

consensus_4228#0      ATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAAT 315
consensus_4228#1      ATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAAT 359
                      ************************************************************

consensus_4228#0      GCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGAGA 375
consensus_4228#1      GCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGACA 419
                      ********************************************************** *

consensus_4228#0      AAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATCGAGGTCGAGCAGGACGGA 435
consensus_4228#1      AAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATTGAGGTCGAGCAGGACGGA 479
                      ***************************************** ******************

consensus_4228#0      GATGGAACGGTTTACCGGCTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAA 495
consensus_4228#1      GATGGAACGGTTTACCGACTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAA 539
                      ***************** ******************************************

consensus_4228#0      GTCAGAAACCCGCAAACAGCCTGTTATATTGAACGGC-AAATGAAACCGTCCAGTG-CTG 553
consensus_4228#1      -TCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCCAAATGAAACCGTCCAGTGGCTG 598
                       ************************************ ****************** ***

consensus_4228#0      GAGAAAGTTCAACCGTCGCTATCGACTTCTTACGTACCGGAGGACGAACCGCC--GTCAA 611
consensus_4228#1      GGGAAAGTTCAACCGTCGCTATCGACTTCTTTCGCACCGGAGGACGAACCGCCCCGTCAA 658
                      * ***************************** ** ******************  *****

consensus_4228#0      GCGTGGCCGAGGCCG-CCACGGAAGCAGATCAAAGTGGAACCGGACACAATCGGTTATAG 670
consensus_4228#1      GCGTGGCCGAGGCCGGCCGCGGAAGCAGATCAA--------------------------- 691
                      *************** ** **************                           

consensus_4228#0      ACGGGGAATTCCAATCGTCNAAGACACAGACACGCAAAGACACCAAAAGTTTTCACCAAA 730
consensus_4228#1      ------------------------------------------------------------
                                                                                  

consensus_4228#0      NGGCATTGGGGACCGGAAGGCAACNGANAGCGANCCGTTNCCCCACTTGGCGGAATTTCC 790
consensus_4228#1      ------------------------------------------------------------
                                                                                  

consensus_4228#0      GGAACCACNNGGGTTGGGCAAACGAGAT 818
consensus_4228#1      ----------------------------