These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence [GCAGATCGCCACGANNNTGGCTATTGGACGTGTTTAGTCAATCCAACCTGGGACCTGCATATGGCATCGGTCATATCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGCTGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGGGACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAACATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAATGCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGAGAAAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATCGAGGTCGAGCAGGACGGAGATGGAACGGTTTACCGGCTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAAGTCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCAAATGAAACCGTCCAGTGCTGGAGAAAGTTCAACCGTCGCTATCGACTTCTTACGTACCGGAGGACGAACCGCCGTCAAGCGTGGCCGAGGCCGCCACGGAAGCAGATCAAAGTGGAACCGGACACAATCGGTTATAGACGGGGAATTCCAATCGTCNAAGACACAGACACGCAAAGACACCAAAAGTTTTCACCAAANGGCATTGGGGACCGGAAGGCAACNGANAGCGANCCGTTNCCCCACTTGGCGGAATTTCCGGAACCACNNGGGTTGGGCAAACGAGAT] [+] EMBL BX467271 [GCAGATCGCCACGANNNTGGCTATTGGACGTGTTTAGTCAATCCAACCTGGGACCTGCATATGGCATCGGTCATATCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGCTGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGGGACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAACATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAATGCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGAGAAAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATCGAGGTCGAGCAGGACGGAGATGGAACGGTTTACCGGCTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAAGTCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCAAATGAAACCGTCCAGTGCTGGAGAAAGTTCAACCGTCGCTATCGACTTCTTACGTACCGGAGGACGAACCGCCGTCAAGCGTGGCCGAGGCCGCCACGGAAGCAGATCAAAGTGGAACCGGACACAATCGGTTATAGACGGGGAATTCCAATCGTCNAAGACACAGACACGCAAAGACACCAAAAGTTTTCACCAAANGGCATTGGGGACCGGAAGGCAACNGANAGCGANCCGTTNCCCCACTTGGCGGAATTTCCGGAACCACNNGGGTTGGGCAAACGAGAT] consensusID : consensus_4228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence [CCGGCAGCCCGAAAATGAGTAGCGAAAGGGATTGCGCCCTTTGCCTAACCAGCGAATCCAAATGGCTATTGGACGTGTTTAGTGAATCCAACCGGGACCTGCATATGGCATCGGTCATATCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGCTGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGGGACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAACATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAATGCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGACAAAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATTGAGGTCGAGCAGGACGGAGATGGAACGGTTTACCGACTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAATCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCCAAATGAAACCGTCCAGTGGCTGGGGAAAGTTCAACCGTCGCTATCGACTTCTTTCGCACCGGAGGACGAACCG-CCCCGTCAAGCGTGGCCGAGGCCGGCCGCGGAAGCAGATCAA] [+] EMBL BM582928 [CCGGCAGCCCGAAAATGAGTAGCGAAAGGGATTGCGCCCTTTGCCTAACCAGCGAATCCAAATGGCTATTGGACGTGTTTAGTGAATCCAACCGGGACCTGCATATGGCATCGGTCATATCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGCTGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGGGACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAACATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAATGCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGACAAAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATTGAGGTCGAGCAGGACGGAGATGGAACGGTTTACCGACTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAATCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCCAAATGAAACCGTCCAGTGGCTGGGGAAAGTTCAACCGTCGCTATCGACTTCTTTCGCACCGGAGGACGAACCG CCCCGTCAAGCGTGGCCGAGGCCGGCCGCGGAAGCAGA ] [+] EMBL BM575585 [ CCGGAAAATGAGTAGCGAAAGGGATTGCGCCCTTTGCCTAACCAGCGAATCCAAATGGCTATTGGACGTGTTTAGTGAATCCAACCGGGACCTACATATGGCATCGGTCATATCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGCTGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGGGACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAACATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAATGCTTCGTACGATGGAAGCGATGAGCAGGAAAGCCCCAGCAGGGGCTCGGCAATTGAGAGAAATAAGAAGTCAAACGATCAGGAGTTTAGCCTTTTCGAAATCGAGGTCGAGCAGGACGGAGATGGAACGGTTTACCGGCTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAATCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCCAAATGAAACCGTCCAGTGGCTGGGGAAAGTTCAACCGTCGCTATCGACTTC TTCGTGCCGGAGGACGAACCGCCCCCGTCAAGCGTGGCCGAGGCCGGCCACGGAAGCAGATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4228#0 -------------------------------------------GCAGATCGCC--ACGAN 15 consensus_4228#1 CCGGCAGCCCGAAAATGAGTAGCGAAAGGGATTGCGCCCTTTGCCTAACCAGCGAATCCA 60 * * * * * consensus_4228#0 NNTGGCTATTGGACGTGTTTAGTCAATCCAACCTGGGACCTGCATATGGCATCGGTCATA 75 consensus_4228#1 AATGGCTATTGGACGTGTTTAGTGAATCCAACC-GGGACCTGCATATGGCATCGGTCATA 119 ********************* ********* ************************** consensus_4228#0 TCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGC 135 consensus_4228#1 TCGAAACACCTGTGGTTTGATCTGAATCCCGCCAGCGAGCCTCACATTTGTATGGATTGC 179 ************************************************************ consensus_4228#0 TGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGG 195 consensus_4228#1 TGGACCACCATACACAACTTCCATCGGTACTACACCAAGCTCGAAGCCCTCCACGATCGG 239 ************************************************************ consensus_4228#0 GACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAAC 255 consensus_4228#1 GACGATGGAATCACAGTCGATGAGTCGACCGCGAACGATGAGATGGGAGAGCTGAAAAAC 299 ************************************************************ consensus_4228#0 ATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAAT 315 consensus_4228#1 ATTGAATTCCTCGAGGAAGATGCCGAGGAGCTCCGGATGCAGATGAAACAGATTCCCAAT 359 ************************************************************ consensus_4228#0 GCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGAGA 375 consensus_4228#1 GCTTCGTACGATGGAAGCGAAGAGCAGGAAAGCCCCAGCAGGGGCTCGGCACTTGAGACA 419 ********************************************************** * consensus_4228#0 AAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATCGAGGTCGAGCAGGACGGA 435 consensus_4228#1 AAGAAGAAGTCAAACGATGAGGAGTTTAGCCTTTTCGAAATTGAGGTCGAGCAGGACGGA 479 ***************************************** ****************** consensus_4228#0 GATGGAACGGTTTACCGGCTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAA 495 consensus_4228#1 GATGGAACGGTTTACCGACTGGATGCATTTGAAAACCACGAACAGACGGACCGGCCCGAA 539 ***************** ****************************************** consensus_4228#0 GTCAGAAACCCGCAAACAGCCTGTTATATTGAACGGC-AAATGAAACCGTCCAGTG-CTG 553 consensus_4228#1 -TCAGAAACCCGCAAACAGCCTGTTATATTGAACGGCCAAATGAAACCGTCCAGTGGCTG 598 ************************************ ****************** *** consensus_4228#0 GAGAAAGTTCAACCGTCGCTATCGACTTCTTACGTACCGGAGGACGAACCGCC--GTCAA 611 consensus_4228#1 GGGAAAGTTCAACCGTCGCTATCGACTTCTTTCGCACCGGAGGACGAACCGCCCCGTCAA 658 * ***************************** ** ****************** ***** consensus_4228#0 GCGTGGCCGAGGCCG-CCACGGAAGCAGATCAAAGTGGAACCGGACACAATCGGTTATAG 670 consensus_4228#1 GCGTGGCCGAGGCCGGCCGCGGAAGCAGATCAA--------------------------- 691 *************** ** ************** consensus_4228#0 ACGGGGAATTCCAATCGTCNAAGACACAGACACGCAAAGACACCAAAAGTTTTCACCAAA 730 consensus_4228#1 ------------------------------------------------------------ consensus_4228#0 NGGCATTGGGGACCGGAAGGCAACNGANAGCGANCCGTTNCCCCACTTGGCGGAATTTCC 790 consensus_4228#1 ------------------------------------------------------------ consensus_4228#0 GGAACCACNNGGGTTGGGCAAACGAGAT 818 consensus_4228#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||