These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [AGAAAAACAACGAGCGTCGGTAAAACATAGCTGGGCGAGCTTGGTAACGTTTTAGCTAGATAGATAGAGCAAAGAAGAAACGTGTTTATAGCGTTTTAGGAGAGTGATTTTTTTTTGTTTATATCCAGTGTCCGTGTGCCGTGTGTTTGACCCTCGTTGCCGCCCATATATCTAACCCTTTGGTGCCACGTCAAGCAGAAACATTGCGATAGTCTTGCGAAATCTGCTGGCCTAGAATGAGAAGTCGGCCTAGAACGGAATACATGATTGCTTAGTTCTTTCGTCATACATGAAGAGCTTCCCATGGGTGGAAAATTACCACGTGGGCTTTAGAGATAATGTCAAAAATCTACGCTTAGGTGAGATATTTTGAGCTACGTTTTTTGATGTAAAATGGAGTGATGTTTTCTATCGAATTTCACTGGTGCATAGTGCAATAATTCAGTTTTTTATGGG] [+] EMBL BX616663 [AGAAAAACAACGAGCGTCGGTAAAACATAGCTGGGCGAGCTTGGTAACGTTTTAGCTAGATAGATAGAGCAAAGAAGAAACGTGTTTATAGCGTTTTAGGAGAGTGATTTTTTTTTGTTTATATCCAGTGTCCGTGTGCCGTGTGTTTGACCCTCGTTGCCGCCCATATATCTAACCCTTTGGTGCCACGTCAAGCAGAAACATTGCGATAGTCTTGCGAAATCTGCTGGCCTAGAATGAGAAGTCGGCCTAGAACGGAATACATGATTGCTTAGTTCTTTCGTCATACATGAAGAGCTTCCCATGGGTGGAAAATTACCACGTGGGCTTTAGAGATAATGTCAAAAATCTACGCTTAGGTGAGATATTTTGAGCTACGTTTTTTGATGTAAAATGGAGTGATGTTTTCTATCGAATTTCACTGGTGCATAGTGCAATAATTCAGTTTTTTATGGG] consensusID : consensus_4229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 432 fasta sequence [GCTGGGTAACGTTTTAGCTAGATAGATAGAGCAAAGAAGAAACGTGTTTATAGCGATTTAGGAGAGTGATTTTTTTTGTTTGTTTTTGTACAAAACGTTACAGAACCAATGAAGAGAAGAAGGCAGGAAGGGGCCGGCAGCAGCAGCAGCTCCAGTCACACCGAGCGAAGTAATCAAAGCACAAGAAAGCGCACGAAACGCAGCAGAGCAAAGCAAAGCAAAGAGGGAGAGAGAGAGAGCGAGAGAGCTTGTGCGAAGAAAGGGATAGGAGACTGCTAAGGAAAGGGGAAGGAGAAGATAAGAAAGATTAATTAATTCCTAACTGAAATTTAGGTTTACCTACACACACACACATCTTACTAGTAGCAGCAAATATACGAAACTCTAAGTGTGTGTTGCATTTAGGAAACAAAATTTTCCTCCCCATTTCCC] [+] EMBL BX627281 [GCTGGGTAACGTTTTAGCTAGATAGATAGAGCAAAGAAGAAACGTGTTTATAGCGATTTAGGAGAGTGATTTTTTTTGTTTGTTTTTGTACAAAACGTTACAGAACCAATGAAGAGAAGAAGGCAGGAAGGGGCCGGCAGCAGCAGCAGCTCCAGTCACACCGAGCGAAGTAATCAAAGCACAAGAAAGCGCACGAAACGCAGCAGAGCAAAGCAAAGCAAAGAGGGAGAGAGAGAGAGCGAGAGAGCTTGTGCGAAGAAAGGGATAGGAGACTGCTAAGGAAAGGGGAAGGAGAAGATAAGAAAGATTAATTAATTCCTAACTGAAATTTAGGTTTACCTACACACACACACATCTTACTAGTAGCAGCAAATATACGAAACTCTAAGTGTGTGTTGCATTTAGGAAACAAAATT ] [+] EMBL BX625546 [ GGGTAACGTTTTAGCTAGATAGATAGAGCAAAGAAGAAACGTGTTTATAGCGATTTAGGAGAGTGATTTTTTTTGTTTGTTTTTGTACAAAACGTTACAGAACCAATGAAGAGAAGAAGGCAGGAAGGGGCCGGCAGCAGCAGCAGCTCCAGTCACACCGAGCGAAGTAATCAAAGCACAAGAAAGCGCACGAAACGCAGCAGAGCAAAGCAAAGCAAAGAGGGAGAGAGAGAGAGCGAGAGAGCTTGTGCGAAGAAAGGGATAGGAGACTGCTAAGGAAAGGGGAAGGAGAAGATAAGAAAGATTAATTAATTCCTAACTGAAATTTAGGTTTACCTACACACACACACATCTTACTAGTAGCAGCAAATATACGAAACTCTAAGTGTGTGTTGCATTTAGGAAACAAAATTTTCCTCCCCATTTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4229#0 AGAAAAACAACGAGCGTCGGTAAAACATAGCTGGGCGAGCTTGGTAACGTTTTAGCTAGA 60 consensus_4229#1 --------------------------------------GCTGGGTAACGTTTTAGCTAGA 22 *** ****************** consensus_4229#0 TAGATAGAGCAAAGAAGAAACGTGTTTATAGCGTTTTAGGAGAGTGATTTTTTTT----- 115 consensus_4229#1 TAGATAGAGCAAAGAAGAAACGTGTTTATAGCGATTTAGGAGAGTGATTTTTTTTGTTTG 82 ********************************* ********************* consensus_4229#0 TGTTTATATCCAGTGTCCGTGTGCCGT----GTGTTTGACCCTCGTTGCCGCCCATA--- 168 consensus_4229#1 TTTTTGTACAAAACGTTACAGAACCAATGAAGAGAAGAAGGCAGGAAGGGGCCGGCAGCA 142 * *** ** * ** * ** * * * * * * *** * consensus_4229#0 -TATCTAACCCTTTGGTGCCACGTCAAGCAGAAACATTGCGATAGT-CTTGCGAAATCTG 226 consensus_4229#1 GCAGCAGCTCCAGTCACACCGAGCGAAGTAATCAAAGCACAAGAAAGCGCACGAAACGCA 202 * * ** * ** * *** * * * * * * * ***** consensus_4229#0 CTGGCCTAGAATGAGAAGTCGGCCTAGAACGGAATA-CATGATTGCTTAGTTCTTTCGTC 285 consensus_4229#1 GCAGAGCAAAGCAAAGCAAAGAGGGAGAGAGAGAGAGCGAGAGAGCTTG--TGCGAAGAA 260 * * * * * *** * * * * ** **** * * consensus_4229#0 ATACATGAAGAGCTTCCCATGGGTGGAAAATTACCACGTGGGCTTTAGAGATAATGTCAA 345 consensus_4229#1 AGGGATAGGAGACTGCTAAGGAAAGGGGAAGGAGAAGATAAGAAAGATTAATTAATTCCT 320 * ** ** * * * ** ** * * * * * ** * ** consensus_4229#0 AAATCTACGCTTAGGTGAGATATTTTGAGCTACGTTTTTTGATGTAAAATGGAGTGATGT 405 consensus_4229#1 AACTGAAATTTAGGTTTACCTACACACACACACATCTTACTA-GTAGCAGCAAAT-ATAC 378 ** * * * * * * ** * ** * ** * *** * * * ** consensus_4229#0 TTTCTATCGAATTTCACTGGTGCATAGTGCA-ATAATTCAGTTTTTTATGGG-- 456 consensus_4229#1 GAAACTCTAAGTGTGTGTTGCATTTAGGAAACAAAATTTTCCTCCCCATTTCCC 432 * * * * * *** * * **** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||